Sedimentary Organic Matter Research Articles

Method Development and Comprehensive Study of Matrix Effects for the Determination of Trace Organic Contaminants in Lake Sediments

The presence of trace organic contaminants (TrOCs), such as pharmaceuticals, personal care products, additives, and polar pesticides in sediments of rivers and lakes highly impacted by anthropogenic activities makes sediments a secondary source of contamination for aquatic ecosystems. Considering this, a method for analyzing 44 TrOCs of diverse nature (including five transformation products, 13 pharmaceuticals, five personal care products, 14 pesticides, and seven additives) was developed and validated. It is based on extraction by pressurized liquid extraction (PLE), followed by purification and pre-concentration by solid phase extraction (SPE) and quantification by liquid chromatography coupled to a triple quadrupole mass spectrometer (LC-QqQMS). The method was optimized according to dispersant type, temperature, and extraction solvent. The influence of organic matter in sediments on quantitative analysis was also investigated in detail. Matrix effects were highly and significantly correlated (r=-0.9146, p < 0.0001) with retention time. Using internal standards showed the best results for effectively correcting matrix effects without affecting method sensitivity. The method was then validated according to key figures of merit: linearity (R2 > 0.990), extraction recoveries (> 60% for 34 compounds), trueness (bias % < 15%), precision (relative standard deviation < 20%) and matrix effects (between -13.3% and 17.8%). This method can be applied for routine analysis of TrOCs in different sediment matrices. The method was applied to ten lake sediment samples collected in Québec, Canada. Results demonstrated the presence of 17 compounds in at least one lake at concentrations between 0.07 to 1531 ng g-1. The reported concentrations provide a first picture of the occurrence of chemical stressors in sediments of small lake highly anthropized ecosystems in Eastern Canada.

Spatial distribution studies on sedimentary organic matter along the shoreline of Arabian Sea: insights from Kollam, Southwest Coast, India.

The present study was aimed at investigating the source, quality, and quantity of organic matter and labile fraction of biochemical constituents in the surficial sediments of Arabian Sea Shoreline at Kollam, India, which gives an input into the processes associated with the subsurface geochemistry pattern. About 15 surface sediment samples were collected from the five beaches for this study during January 2021. The samples were analyzed for CHN, total organic carbon (TOC), and labile fraction such as carbohydrates (CHO), proteins (PRO), and lipids (LIP). The TOC/TN ratio revealed that the source organic matter (OM) in the samples was primarily of marine origin and autochthonous, except TM3 at Thirumullavaram. Thirumullavaram is a sheltered beach, and it has low hydrodynamic process. The high organic matter content in TM3 (13.9) may be the originated from the terrestrial input. The hierarchical cluster analysis revealed that TM3 indicate that unique character to other stations. Principal component analysis revealed that three components accounted for 78% of the total variance. PC1 variance was associated with carbon-based organic compounds. PC2 was predominantly influenced by CHO and LOM, suggesting that PC2 may encompass variability associated with these nutritional profiles. PC3 was influenced by LIP and LIP/CHO, showing it may be a lipid-related component. The PRO to CHO ratio is < 1, exhibiting old aged organic matter deposited in sediments and the meso-oligotrophic status. The LIP to CHO ratio, recorded as < 1, exhibits the poor quality of energetic (food) OM in sediments. The sediment samples exhibit the following trend CHO > PRO > LIP.

The Role of Benthic TA and DIC Fluxes on Carbon Sequestration in Seagrass Meadows of Dongsha Island

Coastal blue carbon ecosystems sequester carbon, storing it as plant biomass and particulate organic matter in sediments. Recent studies emphasize the importance of incorporating dissolved inorganic and organic forms into carbon assessments. As sediment-stored organic matter decomposes, it releases dissolved inorganic carbon (DIC) and total alkalinity (TA), both of which are critical for regulating the partial pressure of CO2 (pCO2) and thus carbon sequestration. This study investigated the role of benthic DIC and TA fluxes in carbon sequestration within seagrass meadows in Dongsha Island’s inner lagoon (IL) during the winter and summer seasons. Chamber incubation experiments revealed elevated benthic DIC and TA fluxes compared to global averages (107 ± 75.9 to 119 ± 144 vs. 1.3 ± 1.06 mmol m−2 d−1 for DIC, and 69.7 ± 40.7 to 75.8 ± 81.5 vs. 0.52 ± 0.43 mmol m−2 d−1 for TA). Despite DIC fluxes being approximately 1.5 times higher than TA fluxes, water pCO2 levels remained low (149 ± 26 to 156 ± 18 µatm). Mass balance calculations further indicated that benthic DIC was predominantly reabsorbed into plant biomass through photosynthesis (−135 to −128 mmol m−2 d−1). Conversely, TA accumulated in the water and was largely exported (−60.3 to −53.7 mmol m−2 d−1), demonstrating natural ocean alkalinity enhancement (OAE). This study highlights the crucial role of IL seagrass meadows in coastal carbon sequestration through net autotrophy and carbonate dissolution. Future research should explore the global implications of these processes and assess the potential of natural OAE in other coastal blue carbon ecosystems.

Linking Biodiversity and Functional Patterns of Estuarine Free-Living Nematodes with Sedimentary Organic Matter Lability in an Atlantic Coastal Lagoon (Uruguay, South America)

We examined the taxonomical and functional traits of free-living nematodes, focusing on their density by genus, maturity index (MI), and trophic diversity index (ITD) to determine whether these indices are sensitive to changes in the organic content of the sediment. Samples were collected in autumn and spring from 12 subtidal sampling stations in Rocha Lagoon, distributed between the outer (near the mouth) and the inner sector. We identified 26 genera, with higher abundance in the inner sector, likely due to increased organic matter and biopolymers. In spring, both sectors had sediments rich in fresh organic matter, dominated by deposit-feeding nematodes and showing low trophic diversity (high ITD values). In autumn, the inner sector maintained similar characteristics to spring sampling, while the outer one was dominated by older organic matter, predatory nematodes and higher trophic diversity. The MI showed low variation between sectors, suggesting a disturbed environment. Our findings support the use of ITD to assess other aspects of communities such as the response of trophic groups to the freshness of organic matter, while the MI seems less effective for assessing the ecological status of Rocha Lagoon. Understanding nematode biodiversity and functional traits is crucial for effective ecological quality assessments.

Hydrogen isotope fractionation during aromatization to form alkylnaphthalene: Insights from pyrolysis experiments of 1-n-butyldecalin

Alkylnaphthalene homologues are important components of aromatic fraction in sedimentary organic matter and contain significantly geochemical information relative to formation and evolution of the host organic matter. They mainly originate from hydrocarbon aromatization reaction which involves the dehydrogenation of aliphatic rings resulting in the fractionation of stable hydrogen isotopes between aromatic hydrocarbons and their precursors. To examine these processes, this study thermally pyrolysed 1-n-butyldecalin (BD) at different time intervals under 360 °C/50 MPa to study the aromatization and hydrogen isotope fractionation during alkylnaphthalene formation and evolution. The relative content of aromatic products, such as naphthalene (N) and 1-methylnaphthalene (1-MN), increases with increasing aromatization. Sulfur enhanced the degree of aromatization during BD thermal evolution, resulting in greater N and 1-MN formation. For the compounds with the same carbon skeleton, i.e. tran-1-methyldecalin (1-MD), 5-methyltetraline (5-MT) and 1-MN, the 2H enrichment follows the order δ2H1-MD < δ2H5-MT < δ2H1-MN during the low thermal conversion of BD. However, the order was subsequently destroyed with increasing aromatization. The results indicate that hydrocarbon aromatization can enrich aromatic hydrocarbon in 2H, resulting in a higher δ2H value of higher aromatic-ring-number hydrocarbon than that of a lower aromatic-ring-number at low aromatization. However, 2H enrichment will decrease and even result in a reverse order with enhanced aromatization. Our findings are beneficial for understanding genetic mechanism and hydrogen isotope fractionation effect during the formation and evolution of aromatic hydrocarbons.

Discriminative characteristics of hydrochemical components and sedimentary organic matter in Korean coastal aquaculture systems during summer

Understanding the spatial distribution and sources of sedimentary organic matter (OM) in coastal environments is crucial for effective water quality management and the preservation of ecosystem health. Although extensive research has been conducted on OM dynamics, there remains a gap in understanding the ongoing biogeochemical processes in Korean coastal aquaculture zones, particularly during the summer season. To address this gap, we investigated the spatial variation of water chemical properties and isotopic composition of sedimentary OM to trace the composition, source, and reactivity of mixed OM in aquaculture systems along the Korean coast during the summer season. The isotopic approach was applied to surface sediments from five sections: western (W)-1, W-2, southern (S)-1, S-2, and eastern (E)-1. With respect to increased nutrients (mainly nitrate; 1.2 ± 0.6 mg/L) by dam-water discharge near W sections, our isotopic signatures revealed that a substantial fraction of sedimentary OM might dominantly originated from autochthonous OM source (algae; 36.5%) related to the increase of terrestrial nutrients. Simultaneously, the deposition of allochthonous OM (aquacultural feces; 44%) was predominant in the S-2 sections. The 34S-depleted patterns (approximately -7.2‰) in the S-2 section was indicative of active sulfate reduction occurring at the sedimentary boundary. Therefore, together with the precise determination of ongoing OM, our isotopic results provide valuable insights for effectively managing water-sedimentary qualities under the increase of anthropogenic contamination.

Apportioning sources of natural and anthropogenic organic matter in sediment from Lake Shihwa: An integrated approach using molecular ratios and compound-specific stable-isotope analysis

We tested an integrated multi-isotopic analysis framework to quantitatively estimate anthropogenic organic matter (OM) loads in different land-use types of a watershed (Lake Shihwa, South Korea). The isotopic signatures of increased bulk-element abundances in urban areas and industrial complexes may reflect the mixed contributions of natural and anthropogenic sources. Together with the predominant abundance of n-alkanes and polycyclic aromatic hydrocarbons at both boundaries, specific indices derived from their abundance may be indicative of mixed contributions from terrestrial plants, petroleum, and combustion deposited through various pathways (e.g., atmospheric deposition, outfall pipes, and surface runoff). Based on these properties, compound isotopic signatures (δ13CC27+C29+C31, δ13CFl, δ13CPyr, δ13CBaA+Chry, δ13CIcdP, δ13CBghiP,) for both land-use types may provide significant evidence of an increase in anthropogenic derived-OM loads (> 90 %) in Lake Shihwa. This approach suggests that total organic carbon–weighted source apportionments can provide useful quantitative estimates of OM loads within complex river systems.

Utilizing fluorescence indicators to apportion organic sources in estuarine/coastal sediments: A comparison with a stable isotopic model

Coastal sediments accumulate organic matter (OM) from diverse sources, including local anthropogenic pollution. Effective source tracking of sediment OM is crucial for pollution source management. This study compares fluorescence proxies and stable isotopic ratios as tracers for sediment OM in Gangu Port, Korea. An optimized extraction method using distilled water for 0.5 h yielded distinct fluorescence signatures. The humification index (HIX) and protein-like component (C3%) showed ideal mixing behavior with two end-members (fishery market sediment and algae). A Bayesian end-member mixing analysis model revealed that agricultural soil is the prevalent contributor to sediments, aligning with land use patterns. The fluorescence-based model showed higher sensitivity to anthropogenic influences compared to traditional stable isotope ratios. The results strongly agreed with isotope ratio-based predictions, exhibiting a positive correlation (p < 0.05) at 8 out of 14 sites. This study highlights the potential of fluorescence-based tracking to complement or replace conventional stable isotope methods.

Discovery of calcium sulfate at different hydration states on Mars - based on perseverance SHERLOC analysis

Organic matter on planets is often co-deposited with evaporites, and evaporation of lakes in the Jezero region of Mars may have led to the deposition of abundant organic matter and minerals such as sulfates, making sulfates important minerals for preserving the remains of potential life on Mars, especially in different hydration states, will help to invert the variability of the Martian environment and provide guidance for the exploration of life on Mars. Raman spectroscopy can detect the molecular composition of organic matter and acid anion information of the target of interest, thus enabling in situ analysis of life information and its living environment. In order to realize the detection of life remains on Mars, The Perseverance rover is equipped with SHERLOC in situ material detection payload, which adopts a 248.6 nm deep ultraviolet (DUV) laser to simultaneously excite Raman and fluorescence signals of the target. In this paper, five scans in three modes (survey scan, HDR scan and detail scan) from two sites on Mars (Quartier and Bellegarde) were selected for preliminary analysis, and the presence of sulfate minerals at these two sites was confirmed. The detail scans at Quartier were analyzed in depth, and the presence of four calcium sulfate minerals, gypsum (CaSO4∙2 H2O), bassanite (CaSO4∙0.5 H2O), anhydrite (β-CaSO4) and gamma-calcium sulfate (γ-CaSO4)was inferred from the states of ν1 (SO4), ν3 (SO4) and hydrated peaks. The differences in the degree of hydration of calcium sulfate minerals suggest that there may have been active water activity on Mars. By comparing data collected by SHERLOC with spectra from spectral libraries, the composition of small-scale structures on Mars may be assessable. However, due to the complexity of the Martian geology, more accurate water activity will need to be combined with more detailed ions, temperatures, humidity, and other conditions for a more precise analysis.

Sedimentary organic matter signature hints at the phytoplankton-driven biological carbon pump in the central Arabian Sea

Abstract. The central Arabian Sea, a unique tropical basin, is profoundly impacted by monsoon wind reversal affecting its surface circulation and biogeochemistry. Phytoplankton blooms associated with high biological productivity and particle flux occur in the northern part of the central Arabian Sea due to summer-monsoon-induced open-ocean upwelling and winter convection. The core oxygen minimum zone (OMZ) at intermediate water depths is another important feature of the northern central Arabian Sea and fades southward. In this study, we attempt to interlink how these factors collectively impact phytodetrital export to the sediment. Short sediment core-top (1 cm) samples representing the recent particle flux signatures were analysed from five locations (21 to 11° N; 64° E) in the central Arabian Sea. Previously, we used core-top (0–0.5 cm) samples and observed a trend between diatom frustule abundance and diversity with bulk sedimentary parameters indicating a spatial variability in phytodetrital export to the sediment. To verify this observation further, lipid biomarkers of key phytoplankton groups and a sea surface temperature (SST) proxy have been analysed in addition to diatom frustules. The C37 alkenone-based SST proxy indicated cooler SST (27.6 ± 0.25 °C) in the north (21–15° N) mostly due to upwelling (summer) and convective mixing (winter). Warmer SSTs (+0.4 °C) are measured in the south, which usually remains nutrient-poor. This trend was consistent with satellite-derived average SST values (2017–2020). Lipid biomarker analysis suggests that dinoflagellates were likely to be the highest contributor, as indicated by dinosterol and its degradative product dinostanol, followed by brassicasterol and C37 alkenone, likely representing diatoms and coccolithophores, respectively. The north, which largely experiences periodic phytoplankton blooms and is influenced by the thick OMZ, revealed the highest contents of organic matter, diatom frustules (diversity and abundance), dominated by large, thickly silicified cells (e.g. Coscinodiscus and Rhizosolenia) and phytoplankton lipid biomarkers, as well as lower contents of zooplankton biomarkers (cholesterol and cholestanol). In contrast, relatively smaller chain-forming centric (e.g. Thalassiosira) and pennate (e.g. Pseudo-nitzschia, Nitzschia, Thalassionema) diatom frustules along with lower phytoplankton lipid biomarker contents were found in the south, where zooplankton biomarkers and silicious radiolarians were more abundant. The possible impacts of the OMZ on particle flux related to the phytoplankton community, including zooplankton grazing and other factors, have been discussed.

System efficiency of methylmercury production, an important indicator for evaluating the long-term risk of mercury: From a case study in the Jiaozhou Bay to global coastal seas

With the implementation of the Minamata Convention, total Hg (THg) in coastal seas are expected to be reduced. However, methylmercury (MeHg) levels in aquatic environments depend not only on THg, but also the system efficiency of MeHg production (represented by MeHg/THg ratio in seawater) whose variations with time remain unclear. By choosing the Jiaozhou Bay (JZB) as a typical coastal system, combined with the published data from the global coastal systems, system efficiency of MeHg production in coastal seas were investigated. The mass budget of MeHg showed that the in situ production and degradation are the major source and sink of MeHg in the JZB. The relationships of MeHg in the seawater and fish with MeHg/THg in seawater indicate that system efficiency of MeHg production may control the risk of MeHg in coastal systems. The sulfate and nitrate in seawater, organic matter in sediment, biotic methylation, and transport of inorganic Hg from the seawater to sediment were identified to be critical parameters and processes for the MeHg/THg in global coastal seas. The findings of this study highlight the importance of monitoring the system efficiency of MeHg production and its controlling processes and parameters for evaluating the long-term risk of Hg.

Spatiotemporal distribution of sedimentary chloropigments and organic carbon in a shelf sea ecosystem, with a focus on the cold water mass

The Yellow Sea is one of the most thoroughly studied shelf seas in the northwestern Pacific. However, many aspects of the northern Yellow Sea sediments remain poorly understood. Sedimentary chloropigments and total organic carbon (TOC) are crucial components that indicate benthic primary productivity and ecosystem functioning in the marginal sea system. The present study investigated the temporal and spatial variations of sediment chloroplastic pigments (Chl-a and Pha-a) and TOC contents in relation to seasons and the northern Yellow Sea Cold Water Mass (NYSCWM). Decadal trends were also examined using linear regression on time-series data from 12 cruises conducted over a nine-year period (2006–2014). The correlations between sedimentary Chorophy-a (Chl-a), Pheophorbide-a (Pha-a), TOC, and their ratios with other abiotic and biotic factors were analyzed to detect any effects of the NYSCWM on the spatiotemporal distribution of sediment Chl-a, Pha-a, TOC contents, as well as the ecological relevance of their ratios as indicators of food quality (freshness) in the benthic system. The NYSCWM substantially influences the spatial and seasonal distribution of sedimentary Chl-a, Pha-a, and TOC contents. High values of Pha-a, TOC, and the ratios of Pha-a/(Chl-a + Pha-a) and TOC/Chl-a were often observed in the central region of the NYSCWM, where Chl-a showed clear seasonal fluctuations while Pha-a and TOC remained relatively constant. While sedimentary TOC appears to negatively mirror the spatial pattern of primary productivity in the water column, the spatial pattern of sedimentary Chl-a in relation to NYSCWM is less evident. However, the contents of Pha-a and TOC in the central NYSCWM sediments were higher than those at surrounding NYSCWM stations. Surface sediment Pha-a/(Chl-a + Pha-a) ratio was negatively correlated with meiofauna abundance and biomass and positively correlated with nematode/copepod ratio. This finding indicates that the quality of sediment organic matter is important to meiofauna. Conversely, the lower organic degradation rate at the lower bottom temperature of the NYSCWM may explain the observed higher Pha-a and TOC contents in its central area. Time-series data collected over nine years at the NYSCWM stations showed a decreasing trend for Chl-a, while TOC and the ratio of Pha-a/(Chl-a + Pha-a) exhibited increasing tendencies. This trend may imply a reduced quality of food supply to the benthic food web in the shelf sea system, along with degraded ecosystem functioning and service under the impacts of global change and anthropogenic disturbances.

Sargassum beaching on mangrove sediments shifts microbial and crab metabolisms and enhances blue carbon storage

AbstractBenthic metabolism and net carbon accumulation in mangroves sediments strongly depend on the quantity and quality of organic matter (OM) supplied, including material brought by coastal waters such as the macroalgae Sargassum spp. Mesocosms were used to assess the effect of eutrophication by Sargassum on mangrove sediments. The concentration of fatty acids (FAs), organic carbon and its carbon isotopic signature, and the sediments–air CO2 fluxes were used to follow the evolution of sedimentary OM in surface and subsurface sediments for 60 d. Sargassum beaching shifted microbial and crab metabolism, leading to a preferential degradation of the labile fraction of OM from both Sargassum (δ13C = −17.7‰ and high concentration of essential FAs) and mangrove leaves (δ13C: −28.9‰ and high concentrations of 18:2ω6 and 18:3ω3). Fatty acids composition of crabs hepatopancreas revealed they preferentially fed on Sargassum and these invertebrates also increased the particulate OM tidal export. In addition, microbial activity at the sediment surface was enhanced, as revealed by strong production of branched FAs and higher CO2 fluxes in mesocosms containing Sargassum. However, Sargassum beaching also increased the transfer and preservation of more refractory OM from mangrove leaves found in higher quantity in subsurface sediments (6–8 cm) after 60 d. Inputs of macroalgae induced a negative priming effect and enhanced the preservation of blue carbon in the sediments. This negative priming effect was enhanced by crab activities. These biotic interactions that include microbial communities apparently make mangrove efficient in storing carbon in a context of growing eutrophication of the tropical ocean.

Organic petrographic and geochemical insights into organic matter derived from land plants and marine algae in the Lark Formation, Danish North Sea

Climatic fluctuations from the Eocene to the Miocene highlight the importance of investigating the paleoenvironment of the latest Eocene to the Middle Miocene Lark Formation in the Danish North Sea. This study investigates immature sedimentary organic matter in the Lark Formation using 54 cuttings samples and one core sample collected from seven wells in the eastern North Sea Basin. Organic petrography and molecular geochemistry analyses were performed to determine the variations in the quantity and origin of allochthonous and autochthonous organic matter. Additionally, the study assesses the impact of climate fluctuations on marine productivity in the eastern North Sea Basin and land plant vegetation at the basin margins during the latest Eocene to the Middle Miocene.The organic matter in the Lark Formation originated from mixed sources, primarily land plants, with a secondary contribution from marine algae. This is indicated by the maceral composition and the types and abundance of aliphatic and aromatic hydrocarbon biomarker compounds. Moreover, the presence of diterpenoids (gymnosperm biomarkers) and non-hopanoid triterpenoids (angiosperm biomarkers) reveals that the allochthonous organic matter originated from conifers and angiosperms.Climatic impacts on land plants and marine algae during the latest Eocene to the Middle Miocene are revealed by several parameters: the Averaged Chain Length (ACL) of land plant waxes, the proportion of coniferous contribution (C/(C + A)), and the whole rock volume percentages of huminite, inertinite (H + I, vol%) and liptinite (L, vol%). The shifts to cooler and drier climates highlighted the cold adaptation of onshore conifers and resulted in the input of higher molecular weight waxy components into the sediments. However, under these conditions, reduced precipitation and runoff resulted in lower amounts of terrigenous organic matter supplied to the basin. Additionally, the drop in water temperature and the warm-affinity of local algae assemblage led to reduced marine productivity. Together, these factors contributed to an overall decrease in organic richness. In contrast, during shifts to warmer and more humid climates, the trend reversed. The contribution of conifers to the floral assemblage diminished, but higher amounts of terrigenous organic matter were transported to the basin due to increased precipitation and runoff. This was accompanied by warmer water temperatures, boosting the productivity of organic-walled microplankton in the marine environment and contributing to greater organic richness.

Constraints on vertical variability of geogenic ammonium in multi-layered aquifer systems

The elevated levels of geogenic (natural) ammonium in groundwater have been frequently documented in recent years. Although improving insights have been achieved in understanding the genesis of ammonium in the subsurface environment, the vertical variability of the geogenic ammonium in groundwater remains poorly understood. Here, we selected typical multi-layered aquifer systems in the central Yangtze River plain and characterized the vertical heterogeneity of geogenic ammonium through the hydrogeochemical analysis. Subsequently, the controlling factors were identified by examining the molecular composition of dissolved organic matter (DOM) and aquifer sediment features. The results indicated that the ammonium concentration in groundwater increased from the deep to shallow aquifers (2.13 to 9.88 mg/L as N), accompanied by a transition in organic matter (OM) degradation towards the methanogenic stage (δ13C-DIC: −23.07 to −0.34‰). Compared to the deeper aquifers, the DOM in the shallow aquifer was characterized by a higher abundance of the N-containing OM (15.1% > 13.13% > 12.76%) with a lower molecular lability index, corresponding to more thorough degradation extent. The characteristics of the soluble OM in depth-matched sediments were similar to those of the DOM in groundwater, suggesting the persistent water-rock interactions. Besides, the pumping tests revealed that the hydraulic conductivity decreased from deep to shallow aquifers (2.28 to 0.62 m/d), which further facilitated the more retention of geogenic ammonium in the shallow aquifer. That is, the combined effects of the abundant N-containing OM in sediments, strong degradation of the bioactive DOM, and long retention governed by hydrodynamics contributed to the increased ammonium enrichment in the shallow aquifer, thereby generating the vertical variability. The findings underscore the significance of the complex coupled factors in controlling the vertical distribution of geogenic ammonium in multi-layered aquifer systems, which was crucial for understanding the spatial heterogeneity of geogenic contaminated groundwater.

Drying out fish ponds, for an entire growth season, as an agroecological practice: maintaining primary producers for fish production and biodiversity conservation.

Agroecology largely focusses on terrestrial agroecosystems, but it can also be applied to fish farming. Indeed, ponds are typically used for fish production in Europe, but are also important reservoirs of biodiversity. Numerous studies demonstrate that both fish production and biodiversity are strongly determined by human management. One key practice in extensive fish farming, although more rare in Europe, is to dry out ponds. They are left dry for a complete year after several years of fish production. However, the extent to which this practice affects the functioning of the ecosystem, its biodiversity and fish production remain unclear. We investigated data from 85 fish ponds in the Dombes region, France, sampled between 2007 and 2014. We related variation in key abiotic characteristics to the time since last dry out. The dataset included organic matter content in pond sediments and concentrations of inorganic nitrogen and phosphorus in the water column, and biotic components such as macrophytes cover and richness, phytoplankton concentration and richness, macroinvertebrates density, and fish yield. Our results show that drying out facilitates the mineralization of organic matter in sediments and results in higher concentrations of inorganic nitrogen in the water column. Macrophytes cover is highest during the first year after drying out, and gradually declines after at the expense of increasing phytoplankton concentration. The diversity of both is highest in the first year after drying out and declines rapidly, especially for macrophytes. Fish yield is at its maximum in the second year. Drying out fish ponds appears to be an important agroecological practice in extensive fish farming with an application every three to four years. By nutrient recycling, this practice has a positive impact on the balance between primary producers and indirectly on the whole food web during two years. It optimizes fish production and allows biodiversity conservation.

Impacts of anthropogenic resuspension on sediment organic matter: An experimental approach

Globally coastal sediments are frequently disturbed by a wide range of physical anthropogenic processes (e.g. bottom trawling) which causes resuspension of sediment organic matter (OM) into the overlaying water column. In this study we present experimental results showing that anthropogenic sediment resuspension decreases the organic carbon (14x) and nitrogen (3x) content in the sediment material resuspended to the water column, while no measurable response was found for organic phosphorus. Our findings furthermore show that the OM bioavailability decreased and the Carbon:Nitrogen:Phosphorus stoichiometry was changed suggesting that anthropogenic resuspension changes the chemical composition, and/or production and degradation pathways of the OM pool. The detected changes in OM biogeochemistry could affect nutrient release, fuel oxygen consumption and at the same time increase CO2 production in coastal waters.

Microplastics impair extracellular enzymatic activities and organic matter cycling in oligotrophic sandy marine sediments

Microplastics (MPs) are ubiquitous and constantly accumulating in the marine environment, especially sediments. Yet, it is not well clarified if and how their carbon backbone could interact with surrounding sediments, eventually impairing key benthic processes. We assessed the effects of a ‘pulse’ contamination event of MPs on sedimentary organic matter (OM) quantity, quality and extracellular enzymatic activities (EEAs), which are well established descriptors of benthic ecosystem functioning. Marine sediments were exposed for 30 days to environmentally relevant concentrations (∼0.2 % in weight) of naturally weathered particles (size range 70–210 μm) of polyurethane, polyethylene, and a mixture of the most common polymers that are documented to accumulate in marine sediments. Despite the low concentration, contaminated sediments showed significantly different composition of OM, showing a decrease in lipid content and increase in protein. Moreover, we document a significant decrease (over 25 %) in quantity of biopolymeric C already after 15 days of exposure, compared to controls. Contaminated sediments showed lower C degradation rates (up to −40 %) and altered EEAs, with alkaline phosphatase being ∼50 % enhanced and aminopeptidase being reduced over 35 % compared to control treatments. Overall, the effects generated by the mixture of polymers were smaller than those exerted by the same amount of a single polymer. Our results provide insights on how that MPs can significantly alter marine sedimentary biogeochemistry through altered benthic processes, that could cumulatively impair whole benthic trophic webs by enhancing the accumulation and possible longer-term storage of recalcitrant organic C in the seabed.

Organic matter in geothermal springs and its association with the microbial community

Organic matter (OM) plays an important role in the biogeochemical cycles of carbon, nitrogen, and other elements, shaping the structure of the microbiome and vice versa. However, the molecular composition of OM and its impact on the microbial community in terrestrial geothermal environments remain unclear. In this study, we characterized the OM in water and sediment from a typical geothermal field using ultra-high-resolution Fourier transform ion cyclotron resonance mass spectrometry. By combining high-throughput amplicon sequencing and multivariate analyses, we deciphered the association between OM components and microbial community. A surprisingly high chemodiversity of OM was observed in the waters (11,088 compounds) and sediments (7772 compounds) in geothermal springs. Sulfur-containing organic compounds, a characteristic molecular signature of geothermal springs, accounted for 21 % ± 5 % in waters and 33 % ± 4 % in sediments. Multivariate analyses revealed that both labile and recalcitrant fractions of OM (e.g., carbohydrates intensity and tannins chemodiversity) influenced the structure and function of the microbial community. Co-occurrence networks showed that Proteobacteria and Crenarchaeota accounted for most of the connections with OM in waters (33 % and 15 %, respectively) and sediments (15 % and 12 %, respectively), highlighting their key roles in carbon cycling. This study expands our understanding of the molecular compositions of OM in geothermal springs and highlights its potentially important role in global climate change through microbial carbon cycling.

Spatial and historical patterns of sedimentary organic matter sources and environmental changes in the Ross Sea, Antarctic: implication from bulk and n-alkane proxies

Organic carbon (OC) burial in the Antarctic marginal seas is essential for regulating global climate, particularly due to its association with ice shelf retreat. Here, we analyzed total OC (TOC), total nitrogen (TN), radiocarbon isotope, n-alkanes and relative indicators in surface and core sediments from the Ross Sea, West Antarctica. Our aim was to investigate spatial and historical changes in OC sources, and to explore the influencing factors and implications for ice shelf retreat since the last glacial maximum (LGM). Our results revealed distinct spatial patterns of OC sources as indicated by n-alkane indicators in surface sediments. In the Western Ross Sea, n-alkanes predominantly originated from phytoplankton and bacteria, as evidenced by their unimodal distribution, low carbon preference index (CPI) of short-chain n-alkanes (CPIL = 1.41 ± 0.30), and low terrestrial/aquatic ratio (TAR = 0.22 ± 0.14). In the Southwest Ross Sea, n-alkanes were derived from marine algae and terrestrial bryophytes, indicated by bimodal distribution, low ratio of low/high molecular-weight n-alkanes (L/H = 0.62 ± 0.21), low CPI of long-chain n-alkanes (CPIH = 1.18 ± 0.16), and high TAR (1.26 ± 0.66). In contrast, the Eastern Ross Sea exhibited n-alkanes that were a combination of phytoplankton and dust from Antarctic soils and/or leaf waxes from mid-latitude higher plant, as suggested by both unimodal and bimodal distributions, high L/H (1.60 ± 0.58) and CPIH (2.04 ± 0.28), and medium TAR (0.61 ± 0.30). Geologically, during the LGM (27.3 – 21.0 ka before present (BP)), there was an increased supply of terrestrial OC (TOC/TN = 13.63 ± 1.29, bimodal distribution of n-alkanes with main carbon peaks at nC17/nC19 and nC27). From 21.0 to 8.2 ka BP, as glaciers retreated and temperatures rose, the proportion of marine n-alkanes significantly increased (TOC/TN = 9.09 ± 1.82, bimodal distribution of n-alkanes with main carbon peaks at nC18/nC19 and nC25). From 8.2 ka BP to the present, as the ice shelf continued to retreat to its current position, the marine contribution became dominant (TOC/TN = 8.18 ± 0.51, unimodal distribution of n-alkanes with main carbon peak at nC17/nC18/nC19, and low TAR (0.41 ± 0.32)). This research has significant implications for understanding the variations in Antarctic OC sources and their climatic impacts in the context of accelerated glacier melting.