Sediment Denitrification Rates Research Articles

Nitrogen Removal Performance and Microbial Community Structure of IMTA Ponds (Apostistius japonicus-Penaeus japonicus-Ulva)

Denitrification and anaerobic ammonium oxidation (anammox) are key processes for nitrogen removal in aquaculture, reducing the accumulated nitrogen nutrients to nitrogen gas or nitrous oxide gas. Complete removal of nitrogen from aquaculture systems is an important measure to solve environmental pollution. In order to evaluate the nitrogen removal potential of marine aquaculture ponds, this study investigated the denitrification and anammox rates, the flux of nitrous oxide (N2O) at the water–air interface, the sediment microbial community structure, and the gene expression associated with the nitrogen removal process in integrated multi-trophic aquaculture (IMTA) ponds (Apostistius japonicus-Penaeus japonicus-Ulva) with different culture periods. The results showed that the denitrification and anammox rates in sediments increased with the increase of cultivation periods and depth, and there was no significant difference in nitrous oxide gas flux at the water–air interface between different cultivation periods (p > 0.05). At the genus and phylum levels, the abundance of microorganisms related to nitrogen removal reactions in sediments changed significantly with the increase of cultivation period and depth, and was most significantly affected by the concentration of particulate organic nitrogen (PON) in sediments. The expression of denitrification gene (narG, nirS, nosZ) in surface sediments was significantly higher than that in deep sediments (p < 0.05), and was negatively correlated with denitrification rate. All samples had a certain anammox capacity, but no known anammox bacteria were found in the microbial diversity detection, and the expression of gene (hzsB) related to the anammox process was extremely low, which may indicate the existence of an unknown anammox bacterium. The data of this study showed that the IMTA culture pond had a certain potential for nitrogen removal, and whether it could make a contribution to reducing the pollution of culture wastewater still needed additional practice and evaluation, and also provided a theoretical basis for the nitrogen removal research of coastal mariculture ponds.Graphical

Ocean acidification offsets the effect of warming on sediment denitrification and associated nitrous oxide production

AbstractRates of denitrification and associated nitrous oxide (N2O) production are expected to increase with global warming, leading to positive climate feedback. However, previous studies have not considered the combined effect of ocean acidification (OA, pCO2 ~ 900 µatm) and warming on denitrification rates and N2O production. Here we used a series of whole core incubation studies to assess the combined impact of warming and OA on estuarine sediment denitrification rates and N2O production. Strong warming (+5 °C over mean in situ conditions) increased N2O production by ~4.2 µmol-N m−2 d−1 and denitrification by ~43 µmol-N m−2 d−1, fuelled by water column nitrate (Dw), but decreased rates of nitrification-coupled denitrification in the sediment (Dn) by ~82 µmol-N m−2 d−1. While Dn was not affected by OA, Dw decreased significantly by 51 µmol-N m−2 d−1 when OA was coupled with warmer temperatures. We estimate that OA may offset the increase in estuarine sediment denitrification and N2O production expected from warming alone by up to 64% and reduce a potential positive climate feedback loop by inhibiting denitrification pathways.

Direct evidence indicates that revegetation improves organic carbon limitation in sediment denitrification in a eutrophic headwater river

Fluvial sediments are one of the hotspots for river nitrogen removal and denitrification is usually considered the main process of nitrogen removal. The availability of nitrogen in headwater rivers is often a limiting factor for sediment denitrification. However, with the increase of N load caused by human activities, we hypothesized that carbon sources might become a key factor controlling the denitrification of sediments in headwater rivers. Here, we measured the denitrification rate using the acetylene inhibition technique and related environmental factors, including both water and sediment features, throughout a year in a subtropical eutrophic river (1st-3rd order streams). The results of our Pearson correlation and multiple regression analyses supported our hypothesis. We found that C sources had a higher explanatory power than N sources, and sediment total carbon (STC) had the greatest influence on the denitrification rate among the different C sources, and that water carbon sources directly affected the sediment denitrification rates according to a structural equation model (SEM). A degraded river reach was selected for revegetation as part of our study, and we found that revegetation increased water DOC from 19.47 mg l−1 to 24.45 mg l−1, reduced water NO3−-N from 0.61 mg l−1 to 0.35 mg l−1, and significantly increased the sediment denitrification rates by an average of 176%. Our study provides direct evidence that revegetation improves organic carbon limitation in sediment denitrification in a eutrophic headwater river.

Regulation of potential denitrification rates in sediments by microbial-driven elemental coupled metabolisms

Microbial driven coupled processes between denitrification and methane/sulfur metabolism play a very substantial role in accelerating nitrogen removal in river sediments. Until now, little is known about how element coupling processes alter nitrogen metabolism by the microbial functional communities. The primary objective of this research was to clarify the contributory role of microbial-mediated coupled processes in controlling denitrification. Specifically, the study sought to identify the key bioindicators (or metabolic pathway) for preferably regulating and predicting potential denitrification rate (PDR). Here, a total of 40 sediment samples were collected from the inflow rivers of Chaohu Lake under nitrogen stress. The results revealed the ecological importance of methanogens and sulfate reducing bacteria in the microbial interaction network. Correlations between quantitative or predicted genes showed that the methanogenic gene (mcrA) was synergistic with denitrifying genes, further unraveling that the key role of methanogenesis in denitrification process for facilitating nitrogen removal. The PDR of sediments ranged from 0.03 to 133.21 μg N·g−1·h−1. The study uncovered specific environmental factors (NH4+ and OM) and microbial indicators (nosZ, mcrA, Paracoccus, Thauera, Methanobrevibacter and Desulfomicrobium) as potential contributors to the variations in PDR. Structural Equation Model (SEM) analysis revealed a significant direct effect of NH4+ on PDR, evidenced by a standardized coefficient (λ) of 0.77 (P < 0.001). Additionally, the findings also emphasized the salient role of methanogens (Methanobrevibacter) and methanogenic gene (mcrA) in indicating PDR. The research's aforementioned findings shed light on the substantial consequences of methanogenesis on nitrogen metabolism in coupled processes, enabling improved control of nitrogen pollution in river sediments. This study provided fresh perspectives on the effects of multiple functional taxa on denitrification, and reinforces the significance of coupling processes for nitrogen removal.

Long-term effects of Ag NPs on denitrification in sediment: Importance of Ag NPs exposure ways in aquatic ecosystems

The widespread use of silver nanoparticles (Ag NPs) inevitably leads to their increasing release into aquatic systems, with studies indicating that the mode of Ag NPs entry into water significantly affects their toxicity and ecological risks. However, there is a lack of research on the impact of different exposure ways of Ag NPs on functional bacteria in sediment. This study investigates the long-term influence of Ag NPs on denitrification process in sediments by comparing denitrifies responses to single (pulse injection of 10 mg/L) and repetitive (1 mg/L × 10 times) Ag NPs treatments over 60-day incubation. Results showed that a single exposure of 10 mg/L Ag NPs caused an obvious toxicity on activity and abundance of denitrifying bacteria on the first 30 days, reflecting by the decreased NADH amount, ETS activity, NIR and NOS activity, and nirK gene copy number, which resulted in a significant decline of denitrification rate in sediments (from 0.59 to 0.64 to 0.41–0.47 μmol15N L−1 h−1). While inhibition was mitigated with time and denitrification process recovered to the normal at the end of the experiment, the accumulated nitrate generated in the system showed that the recovery of microbial function did not mean the restoration of aquatic ecosystem after pollution. Differently, the repetitive exposure of 1 mg/L Ag NPs exhibited the evident inhibition on metabolism, abundance, and function of denitrifiers on Day 60, due to the accumulated amount of Ag NPs with the increased dosing number, indicating that the accumulated toxicity on functional microorganic community of repetitive exposure in less toxic concentration. Our study highlights the importance of Ag NPs entry pathways into aquatic ecosystem on their ecological risks, which affected dynamic responses of microbial function to Ag NPs.

Stream nitrogen uptake associated with suspended sediments: A microcosm study

Despite significant advances in our understanding of nitrogen (N) removal pathways along river networks, the role of water column processes remains largely understudied. This knowledge gap not only limits our capacity to determine N transport and retention in mid-to-large rivers but also hampers our understanding of N removal processes in smaller streams during stormflow conditions, in which significant increases in suspended sediment concentrations (SSC) typically occur. High SSC in the water column can provide abundant substrate for microbial growth and water column N uptake. However, storms of different size mobilize different quantities of sediment of varying properties and sizes, which can ultimately modulate water column N uptake rates in the stream during stormflows. To assess water column N uptake associated with suspended sediment particles of different sources and sizes, we quantified assimilatory and dissimilatory N uptake rates in a set of microcosms representing a gradient of sediment properties (organic matter, N content, and microbial activity) and surface area (fine vs. coarse size) availability. Water column assimilatory uptake (Used) ranged from 12.7 to 187.8 µg N [g sediment]−1 d−1 across all sediment sources and size fractions, and was higher on average than denitrification rates (DNsed) in agricultural and stream bank sediments but not in streambed sediments (mean DNsed = 240.9 ± 99 µg·N [g sediment]−1·d−1). Sediment-bound C in suspended sediment varied among sediment sources and was directly related to Used rates, but not to DNsed rates, which were less predictable and more variable. Overall, our results showed a positive nonlinear relationship between water column N uptake and SSC, while indicating that water column N uptake may scale differently to SSC depending on sediment source, and to a lesser degree, particle size. Because low, moderate, and large storms can mobilize different quantities of sediment in the watershed of different sources and sizes, it is likely that storm size will ultimately modulate the contribution of water column uptake during storm events to whole-reach N retention.

Alteration of Dissimilatory Nitrate Reduction Pathways in the Intertidal Sediment during Macroalgae Blooms

To elucidate the effect of macroalgae blooms on dissimilatory nitrate reduction pathways (denitrification, anammox, and DNRA) in sediments of the hypereutrophic Yatsu tidal flat, eastern Japan, sediment denitrification, anammox, and DNRA rates were measured using a 15N tracer technique at two sites affected and unaffected by macroalgae (Ulva) blooms and in incubation experiments with and without Ulva. Anammox was insignificant at both sites and in both experiments. The denitrification rate was consistently higher than the DNRA rate, and its contributions to the total dissimilatory nitrate reduction were 82% and 85% at sites affected and unaffected by Ulva, respectively. In a sediment incubation experiment with Ulva, the contribution of DNRA had increased to approximately 30% on day 7, which is when the sulfide concentration was the highest. Sulfide produced by sulfate reduction during macroalgae blooms inhibited denitrification and did not change the DNRA, and consequently increased the DNRA contribution. On day 21, after reaching the peak sulfide concentration during the late macroalgae collapse, the DNRA contribution decreased to 15%. These results indicated that the DNRA contribution was greater during the macroalgae blooms than at the collapse, although denitrification dominated DNRA regardless of the macroalgal status. Therefore, vigorous macroalgae cover and sulfide production under the macroalgae cover had an important impact on the nitrogen dynamics.

NosZI microbial community determined the potential of denitrification and nitrous oxide emission in river sediments of Qinghai-Tibetan Plateau

Denitrification in river sediments is the hotspot of nitrogen removal and nosZI gene is essential for reducing nitrous oxide (N2O) emissions. However, few studies tried to link nosZI communities with variations of denitrification rates in sediments along the high-elevation rivers. Here, we investigated the spatial variation of potential denitrification rates of sediments along a section (hereafter YJ) of the middle reaches of the Yarlung Zangbo River in the Qinghai-Tibetan Plateau. We also used the real-time quantitative PCR (qPCR) and high-throughput sequencing techniques to evaluate the abundance and composition of nosZI-containing microbial groups. The influences of physicochemical factors and denitrifier communities on potential denitrification rates were further revealed through structural equation modeling. The obtained results indicated that potential denitrification rates and N2O/(N2O + N2) ratio in the sediments along YJ section were greatly different. Moreover, the alpha diversity and composition of nosZI-containing microbial community in river sediments differed remarkably, mainly driven by the ammonia nitrogen (NH4+-N), organic matter (OM) and pH in sediments. The relative abundances of Zoogloeaceae, Oxalobacteraceae, Rhodospirillaceae and Bradyrhizobiaceae significantly differed among five groups (P < 0.05). Structural equation modeling further suggested that nitrogen nutrients directly influenced the potential denitrification rates, while total phosphorus (TP) showed indirect effects on potential denitrification rates through modulating denitrifier abundances and nosZI community. The abundance and composition of nosZI community were powerful predictors in regulating denitrification rates and N2O/(N2O + N2) ratio. Our findings highlight that the nosZI-containing microbial groups play a non-negligible role in nitrogen removal and N2O mitigation in high-elevation river sediments.

Effects of macrophytes and environmental factors on sediment denitrification in a subtropical reservoir

Sediment denitrification plays an important role in nitrogen removal in aquatic systems. However, the importance in nitrogen removal in reservoirs, with a focus on seasonal differences of conditions such as macrophyte beds and environmental factors, is less well understood. This study examined sediment denitrification rate (Dn), and their potential controlling factors were determined in both macrophyte beds and deeper waters in the subtropical reservoir. The mean Dn in the reservoir annually was 18.0 ± 6.3 (mean ± S.E.) mmol N m−2 d−1, with significant seasonal variation (p < 0.01), i.e. 43.2 ± 12.8, 6.7 ± 6.3, and 4.0 ± 2.2 mmol N m−2 d−1 in winter, spring and summer respectively. There were no statistical differences in Dn between shallow waters with macrophyte beds and deeper waters without macrophyte beds, although macrophyte beds had higher denitrification rates in summer. The Dn rates were significantly correlated with temperature, conductivity, dissolved oxygen, pH, nitrate-nitrogen concentration (NO3−-N) (p < 0.01) and turbidity (p < 0.05). Linear regression models demonstrated environmental variables explained between 36% and 76% of the variation in Dn. The correlation with NO3−-N concentrations suggests that it may be a limited factor for Dn. Annual nitrogen removal of the reservoir by a combination of sediment and water denitrification was totally estimated to be 370 t N with an annual removal efficiency of approximately 11%. Nitrogen removal was much higher in winter than other seasons, with about 305 t N removed, accounting for 12% of the total nitrogen inputs. Therefore, denitrification appears to play a minor role throughout much of the year, but in winter months when nitrate accumulates, it may play a more major role.

Increases in Benthic Particulate Export and Sedimentary Denitrification in the Northern Chukchi Sea Tied to Under‐Ice Primary Production

AbstractChanging sea ice conditions have led to increases in net primary production (NPP) in the northern Chukchi Sea, driven in part by massive under‐ice phytoplankton blooms. These blooms increase particle export to the sediments and could affect the rate of sedimentary denitrification. We use a 1‐D coupled ecosystem model forced with satellite‐derived sea ice conditions to quantify changes in particle export, nitrification, and denitrification on the northern Chukchi shelf. Between 1988 and 2018, increases in annual NPP drove secular increases in particle export to the benthos (1.8 ± 0.8 mmol m−2 yr−1), water‐column and sedimentary nitrification (1.2 ± 0.4 and 1.1 ± 0.4 mmol m−2 yr−1, respectively), and sedimentary denitrification rates (1.3 ± 0.5 mmol m−2 yr−1). Increased annual export to the benthos and denitrification were driven by higher rates early in the year (from January to June) and are highest in years where under‐ice blooms (UIBs) dominate. Greater denitrification rates in the northern Chukchi Sea would likely reduce NPP in downstream regions such as the Greenland Sea and promote greater N2 fixation in the North Atlantic. Furthermore, sea ice loss and a change in advection of nitrogen (N)‐replete waters through the Bering Strait will likely increase winter N concentrations in the northern Chukchi Sea. Through N sensitivity experiments, we found that 30% of all added N was lost through denitrification, diminishing the N supply available downstream of the Chukchi Sea. Thus, increased particle export associated with UIBs has the potential to markedly alter the N cycle both in the northern Chukchi Sea and in adjacent waters.

Enhanced Sediment Denitrification for Nitrogen Removal by Manipulating Water Level in the Lakeshore Zone

Denitrification of sediments is an important way to remove reactive nitrogen in lakeshore zones. In this work, we analyzed sediment denitrification patterns across the shore zone of Lake Taihu and explored their underlying mechanisms using flooding simulation experiments. The results showed that denitrification mainly occurred in the upper sediment layer (0–10 cm) and the denitrification rate was highest at the land–water interface (6.2 mg N/m2h), where there was a frequent rise and fall in the water level. Denitrification was weaker in the lakebed sediments (4.6 mg N/m2h), which were inundated long-term, and in the sediments of the near-shore zone (2.3 mg N/m2h), which were dried out for extended periods. Flooding simulation experiments further indicated a strong positive relationship between sediment denitrification rate and flooding frequency. When the flooding occurred once every 3, 6, 9, 12, or 15 days, the denitrification rate reached 7.6, 5.7, 2.8, 0.9, and 0.6 mg N/m2h, respectively. Frequent flooding caused alternating anoxic and aerobic conditions in sediments, accelerating nitrogen substrate supply and promoting the growth and activity of denitrifying bacteria. Based on these findings, we propose a possible strategy for enhancing sediment denitrification by manipulating the water level, which can help guide nitrogen removal in lakeshore zones.

Denitrification within the sediments and epiphyton of tropical macrophyte stands

ABSTRACT Excess nitrogen (N) is one of the most widespread and serious pollutants in the environment, but wetlands can reduce N loads, ameliorating its damaging effects downstream. Tropical wetlands are highly productive and experience high temperatures year-round, resulting in potentially high denitrification rates. However, few measurements of denitrification have been reported for tropical wetlands. In this study, we measured denitrification within stands of macrophytes at the edge of a tropical lake (900 m length, 4 m deep) in Australia. We compared denitrification rates among sediments under emergent grass (giant bulrush, Actinoscirpus grossus), sediments under floating waterlilies (Nymphae spp.), and sediments from the deeper sections of the lagoon with no macrophytes. We also measured the denitrification and primary productivity of the epiphyton on macrophytes and compared the rates with those from the sediment. Denitrification in the sediment was higher (Dt = 3.3–52 mg m−2 h−1) than denitrification of the epiphyton (Dt = 1.9–3.6 mg m−2 h−1) and was mostly coupled with nitrification (Dn). Denitrification was highest in sediments rich in organic carbon (32.3%) and N (1.4%), and during times of the year when nitrates (NOx −-N = NO2 −-N + NO3 −-N) concentrations were relatively high (>0.10 mg L−1). Denitrification was lowest in sediments with no macrophytes, which comprised most of the lake area. Denitrification rates of sediments under these macrophyte stands were among the highest values measured for natural wetlands and highlight the potential role of this process in ameliorating N pollution in tropical catchments.

Nitrogen removal through sediment denitrification in the Yangtze Estuary and its adjacent East China Sea: A nitrate limited process during summertime

Nitrogen nutrient surplus is the main cause of a series of environmental problems in the Yangtze Estuary and its adjacent East China Sea (ECS). Denitrification plays an important role in controlling nitrate dynamics and fate in estuarine and coastal environments. We investigated the natural and potential rates of denitrification in the sediments of the Yangtze Estuary and ECS via slurry incubation experiments combined with acetylene inhibition techniques to reveal its contributions to total nitrogen reduction in this hypereutrophic continental shelf area. Key environmental factors, such as the sediment grain size, sediment extractable inorganic nitrogen (NH4+, NO3− and NO2−), sediment organic carbon (SOC), total nitrogen (TN), isotopic compositions (δ13C and δ15N), etc., were also investigated to determine the main factors controlling the denitrification processes. The measured rates of denitrification ranged from 0.39 to 28.49 ng N g−1·h−1. The total nitrogen removed by denitrification in the study area was 3.7 × 1010 g during August. In total, at least 3.3% of the external inorganic nitrogen transported annually into the estuary could be removed by the denitrification processes in the study area. The sediment denitrification rates correlated significantly with the extractable ammonium and δ15N values of surface sediments, indicating that coupled nitrification-denitrification processes may play an important role in nitrogen removal. Almost undetectable levels of nitrate in the sediment further revealed that nitrate supply, regardless of diffusion from the overlying water or production by sediment nitrification processes, is the bottleneck for denitrification.

Low denitrification rates and variable benthic nutrient fluxes characterize Long Island Sound sediments

Organic matter (OM) loading drives benthic metabolism and controls nitrogen (N), phosphorus (P), and carbon (C) cycling in coastal sediments. To better understand the influence of OM on benthic metabolism, we conducted sediment core incubations in Long Island Sound, NY (USA), an estuary heavily influenced by anthropogenic nutrient loading. Cores were collected during the summer and winter at five stations along a west to east transect representing a gradient of high to low nutrient inputs and subsequent OM deposition. Here we provide a comprehensive analysis of environmental drivers of benthic fluxes as well as the first directly measured rates of sediment denitrification and N-fixation, thus providing a missing piece of the N budget for Long Island Sound. Our findings show greatest sediment oxygen demand (SOD) in the western basin during the summer. Sediments were a source of dissolved inorganic N and P. Compared to historic SOD and ammonium fluxes, our measurements were about 50% lower, potentially reflecting larger scale perturbations (e.g., warming temperatures, decrease wind speed) or reduced N loading through improved management of wastewater treatment facilities. Sediments were a source of nitrous oxide (mean (± standard error): 8.63 ± 3.18 nmol m−2 h−1) and methane (23.80 ± 18.05 nmol m−2 h−1). Net sediment denitrification rates were low (10.34 ± 7.61 µmol N2–N m−2 h−1) and did not vary significantly across stations or seasons. These sediments have a N removal efficiency of ~ 30% with the potential to remove approximately 9% of the total land-based N load entering Long Island Sound.

Nitrogen removal processes coupled with nitrification in coastal sediments off the north East China Sea

Denitrification and anaerobic ammonia oxidation (anammox) play key roles in nitrogen (N) loss, and nitrification can supply substrates of NO2– and NO3– for denitrification and anammox. Coupled nitrification-denitrification/anammox processes are thus crucial for N removal in coastal ecosystems. This study aims to examine the spatial-temporal variations of ambient, coupled, and uncoupled N removal rates in the coastal sediments off the north East China Sea, and to clarify the controlling factors and microbial mechanisms of coupled nitrification-denitrification/anammox. The rates of ambient, coupled, and uncoupled denitrification and anammox in coastal sediments off the north East China Sea were quantified using the continuous-flow experiments combined with 15N isotope pairing technique. The quantitative polymerase chain reaction method was used to determine the abundances of nitrifiers, denitrifiers, and anammox bacteria, with the functional genes of amoA and nirS, and 16S rRNA gene, respectively. Ambient denitrification rates varied between 0.43 and 7.39 μmol N m−2 h−1, and ambient anammox rates ranged from 0.05 to 0.62 μmol N m−2 h−1. Coupled nitrification-denitrification was the dominant N removal pathway. The rates and coupling of N removal processes with nitrification varied distinctly between nearshore and offshore sites, which were driven by diverse environmental factors. Redundancy analysis suggested that nitrate and sulfide were important factors controlling the coupled and uncoupled N removal rates, and nitrate was proved to be the key factor influencing the ratio between coupled and uncoupled N removal via an integrated analysis. Abundances of ammonia oxidizing bacteria (AOB) correlated significantly with coupled denitrification rates and abundances of denitrifiers, suggesting the importance of AOB in coupled nitrification-denitrification. This study investigated the ambient, coupled, and uncoupled denitrification and anammox rates in coastal sediments off the north East China Sea. Nitrate was proved to be the critical factor influencing the ratio between coupled and uncoupled N removal, and AOB may play important role in coupled nitrification-denitrification. These results emphasized that nitrification is crucial for N removal with important implications on N loss in coastal ecosystems.

Human activity intensity controls the relative importance of denitrification and anaerobic ammonium oxidation across subtropical estuaries

Human activities are dramatically increasing estuarine nitrogen (N) loads, further altering N processes. However, relative importance of denitrification and anaerobic ammonium oxidation (anammox) in response to human activities intensity gradient remains poorly understood for estuaries. In this study, we used a 15N isotope tracer approach to characterize the variations in sediment denitrification and anammox rates and determined the crucial factors controlling the partitioning of N2 production and regulating N2O production across five subtropical estuaries in southeast China. Denitrification rates increased significantly from 8.82 ± 3.89 nmol N g−1h−1 (low human activity intensity) to 41.2 ± 11.5 nmol N g−1h−1 (high human activity intensity) across the studied estuaries. Anammox rates not varied significantly between low (2.37 ± 0.66 nmol N g−1h−1), moderate (3.96 ± 0.91 nmol N g−1h−1), and high (4.04 ± 1.09 nmol N g−1h−1) human activity intensity estuaries. Relative contribution of anammox to total N2 production (Ra) decreased toward estuary mouth within each estuary. The Ra was also significantly lower in the estuaries characterized by high N loads and low DO. N2O production rates were in a range of 0.192–1.92 nmol N2O g−1h−1 across the estuaries and controlled by water NO2–, salinity and TOC. DO, NH4+, and NO3– were the best predictors of the partitioning of N2 production between denitrification and anammox. The high human activities intensity increased NH4+ and NO3– loads and further enhanced denitrification, leading to the decrease in Ra and increase in N2O production. These findings suggest that low DO and high N loads estuaries can increase denitrification and N2O emissions, whereas not affect anammox substantially under the higher intensity of human activities.

Coupled relationships among anammox, denitrification, and dissimilatory nitrate reduction to ammonium along salinity gradients in a Chinese estuarine wetland

Salinization in estuarine wetlands significantly alters the balance between their nitrogen (N) removal and retention abilities but these processes have not yet been characterized effectively. In the present study, the potential rates of sediment denitrification, anaerobic ammonium oxidation (anammox), and dissimilatory nitrate reduction to ammonium (DNRA) were mapped using N isotope tracing methods along salinity gradients across the Yellow River Delta wetland (YRDW) in China. The contribution of anammox to total dissimilatory N transformations in YRDW was merely 6.8%, whereas denitrification and DNRA contributed 52.3% and 40.9%, respectively. The potential rate of denitrification (5.82 μmol/kg/h) decreased significantly along salinity gradients and markedly exceeded DNRA potential rate (2.7 μmol/kg/h) in fresh wetlands, but was lower than that of DNRA in oligohaline wetlands (3.06 and 3.18 μmol/kg/h, respectively). Moreover, a significantly positive relationship between salinity and DNRA/denitrification was obeserved, indicating that increased salinity may favor DNRA over denitrification. Furthermore, total sulfur (TS) content and ratio of total organic carbon to total nitrogen (C/N) increased with the salinity gradient and showed evident positive relationships with the DNRA/denitrification ratio. In this study, we proved that increased salinization resulted in the dominance of DNRA over denitrification, possible through the addition of S and alteration of the C/N in estuarine wetlands, leading to increased N retention in estuarine wetlands during salinization, which would enhance the eutrophication potential within wetlands and in downstream ecosystems.

Environmental predictors of sediment denitrification rates within restored green-lipped mussel Perna canaliculus beds

Benthic processes in coastal marine environments can enhance the natural removal of bioreactive nitrogen through denitrification (DNF), a valuable ecosystem service as nutrient over-enrichment intensifies globally. Enhancing ecosystem services is an important justification for restoring coastal ecosystems, and while it is known that epifaunal bivalves (oysters or mussels) are capable of influencing nitrogen cycling, empirical measurement of the role of particular species across a range of environmental conditions is missing. Bivalves within shellfish beds are not uniformly distributed and thus clumps and empty patches within restored beds may differentially impact DNF given the importance of local biogeochemistry. This study reports DNF and respiration rates in 4 restored beds that vary in sediment composition, while identifying which ecological and biogeochemical factors best explain the observed variability in measured fluxes. We deployed benthic chambers in sediments with and without mussels at these sites, and measured net N2 fluxes through membrane inlet mass spectroscopy. Sediment organic matter proved to be the most significant predictor of DNF rates in regression tree and random forest models, suggesting that biodeposition by green-lipped mussels enhances nitrogen removal at these sites and that these effects occur across beds despite differences in mussel density. Greatest DNF rates corresponded to lower sediment chlorophyll a concentrations and higher nitrate/nitrite effluxes measured within chambers. Determining the influence of subtidal mussel restoration on significant sediment processes informs future restoration efforts aiming to maximise this nitrogen removal service, while providing insights on underrepresented oligotrophic systems of the southern hemisphere.

Effects of tetracycline on nitrogen and carbon cycling rates and microbial abundance in sediments with and without biochar amendment

Nitrogen (N) and carbon (C) biogeochemical processes, such as denitrification and organic matter decomposition, are critical in determining ecological functions in aquatic environments. The overuse of antibiotics in human and veterinary medicine has resulted in the ubiquitous presence of these contaminants in lakes, rivers and other water bodies worldwide. However, the effects of antibiotic residues on N and C cycling processes and associated microbial communities are not well understood. Here, 44-day incubation experiments were conducted to examine the impact of tetracycline on nitrification, denitrification, and CO2 and CH4 emissions in sediments with and without biochar addition. Our results showed that tetracycline residues in sediments reached a maximum on the 5th day and then decreased gradually. Throughout incubation, there was no significant difference in sediment N and C cycling rates between control and tetracycline alone treatment. However, the tetracycline + biochar treatment significantly enhanced sediment denitrification rate and the emission of CO2 and CH4. The abundance of N- and C-cycling genes and 16s rRNA gene was significantly reduced by tetracycline exposure only on the 5th day. Furthermore, the relative abundance of several antibiotic resistance genes (ARGs) and class 1 integron-integrase gene (intl1) in sediments was significantly increased after tetracycline exposure. Our findings suggest that, although non-therapeutic concentrations of tetracycline seems to have no adverse effect on sediment N and C cycling rates, the residual tetracycline can reduce sediment microbial abundance in short term and may promote the proliferation of ARGs in long term.

Contrasting Effects of Bioturbation Studied in Intact and Reconstructed Estuarine Sediments

Macrofauna can produce contrasting biogeochemical effects in intact and reconstructed sediments. We measured benthic fluxes of oxygen, inorganic carbon, and nitrogen and denitrification rates in intact sediments dominated by a filter and a deposit feeder and in reconstructed sediments added with increasing densities of the same organisms. Measurements in reconstructed sediments were carried out 5 days after macrofauna addition. The degree of stimulation of the measured fluxes in the intact and reconstructed sediments was then compared. Results confirmed that high densities of bioturbating macrofauna produce profound effects on sediment biogeochemistry, enhancing benthic respiration and ammonium recycling by up to a factor of ~3 and ~9, respectively, as compared to control sediments. The deposit feeder also increased total denitrification by a factor of ~2, whereas the filter feeder activity did not stimulate nitrogen removal. Moreover, the effects of deposit feeders on benthic fluxes were significantly higher (e.g., on respiration and ammonium recycling) or different (e.g., on denitrification) when measured in intact and reconstructed sediments. In intact sediments, deposit feeders enhanced the denitrification coupled to nitrification and had no effects on the denitrification of water column nitrate, whereas in reconstructed sediments, the opposite was true. This may reflect active burrowing in reconstructed sediments and the long time needed for slow growing nitrifiers to develop within burrows. Results suggest that, in bioturbation studies, oversimplified experimental approaches and insufficient preincubation time might lead to wrong interpretation of the role of macrofauna in sediment biogeochemistry, far from that occurring in nature.