Abstract Multiple Sclerosis is a neurodegenerative disease with autoimmune components. Diagnosis is invasive and time consuming. The etiology is unclear as are clues for disease progression. The autoimmune components have largely been defined in the EAE mouse model. The problem has been defining a reliable biomarker for pathogenic cells. We described a unique T cell subset, Th40 cells that is highly auto-aggressive. We compared Th40 levels in clinically isolated syndrome (CIS), relapsing/remitting (RRMS), secondary progressive (SPMS) and primary progressive (PPMS) patients to non-autoimmune controls. MS subjects have significantly increased percentages of Th40 cells compared to controls. In CIS and RRMS Th40 cell levels cover a broad range while in SPMS and PPMS the range is centralized. Longitudinal studies show that Th40 cell levels remain elevated. Th40 cells produce IFNg, TNFa and IL-17. HLA haplotypes were diverse with only 50% of patients expressing the DR2 (DR15) haplotype or DR3 and DR4. Th40 cells are significantly elevated in MS regardless of HLA haplotype and responded to CNS antigens creating antigen signatures. The ratio of Th40 to or to Tr1 cells is 7 to 1. Th40 cells have a memory phenotype. The chemokine receptors CCR5 and CXCR3 were detected. Samples from patients on disease-modifying-therapy (DMT) demonstrated lymphopenia, but the Th40 percentage was not altered. Th40 cells provide a unique diagnostic tool for MS with significant improvement over current options.
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