Nine Marine Autonomous Recording Units (MARU’s) were deployed in a rectangular array at a site coinciding with the United States (U.S.) Navy’s planned Undersea Warfare Training Range (USWTR) approximately 60–150 km offshore Jacksonville, FL (13 September to 8 October and 3 December to 8 January, 2009–2010) at shallow, mid-depth, and deep sites (45, 183, 305 m). Data were reviewed in detail using Triton (Wiggins, 2007). Event logs were created for each day at every site. Custom-written MATLAB scripts were used to calculate the probability of minke whale vocalization events occurring in the presence and in the absence of mid-frequency sonar. Minke whale vocalization events were completely absent in the fall deployment period, but occurred almost continuously during the winter deployment, indicating a strong seasonal pattern of occurrence. Minke whale vocalizations were detected most frequently at deep-water sites, and only at low levels (<0.03% of time) at shallow-water sites. Results of the probability analysis indicated a strong negative correlation to sonar. Minke whale vocalization events were greatly reduced, or completely ceased, during most days with nearly continuous sonar events during an approximate 3-day period. To our knowledge, such changes in acoustic behaviors of minke whales in relation to sonar have not been reported before.