Ecological Science Research Articles

Increasing Trust in New Data Sources: Crowdsourcing Image Classification for Ecology

SummaryCrowdsourcing methods facilitate the production of scientific information by non‐experts. This form of citizen science (CS) is becoming a key source of complementary data in many fields to inform data‐driven decisions and study challenging problems. However, concerns about the validity of these data often constrain their utility. In this paper, we focus on the use of citizen science data in addressing complex challenges in environmental conservation. We consider this issue from three perspectives. First, we present a literature scan of papers that have employed Bayesian models with citizen science in ecology. Second, we compare several popular majority vote algorithms and introduce a Bayesian item response model that estimates and accounts for participants' abilities after adjusting for the difficulty of the images they have classified. The model also enables participants to be clustered into groups based on ability. Third, we apply the model in a case study involving the classification of corals from underwater images from the Great Barrier Reef, Australia. We show that the model achieved superior results in general and, for difficult tasks, a weighted consensus method that uses only groups of experts and experienced participants produced better performance measures. Moreover, we found that participants learn as they have more classification opportunities, which substantially increases their abilities over time. Overall, the paper demonstrates the feasibility of CS for answering complex and challenging ecological questions when these data are appropriately analysed. This serves as motivation for future work to increase the efficacy and trustworthiness of this emerging source of data.

Daoist Eco-Humanism and the Authenticity of Natural Life beyond Deontological Ethics

Recently, much work has been put into the scholarly understanding and interpretation of the complexities of the Daoist tradition. This includes a critical exploration of its contribution to contemporary environmental issues. In this paper, the author reflects on the intersection of Daoist humanism and ecology and highlights the theoretical and historical implications associated with the Daoist approach to the environment. These starting points can tell us much about how Daoist philosophical thought can be successfully connected to humanism and the sciences of ecology and the environment. The article points to the possibility of an alternative worldview that can help us, in our limited time and space, nonetheless find the possibility of living some kind of sustainable yet here-and-now moment. In doing so, the author starts from some key questions found in classical texts. Through her analyzes, she examines the potential applicability of classical Daoist thought and practice in China and in the West, both in relation to the modern ecological crisis and to the role and place of human beings within nature and society.

The role of community science in orthopteran research

Orthopterans are commonly encountered in rural, suburban, and urban landscapes and have charismatic songs that attract the public’s attention. These are ideal organisms for connecting the public with science and critical concepts in ecology and evolution, such as habitat conservation and climate change. In this review, we provide an overview of community science and review community science in orthopterans. Best practices for orthopteran community science are provided, with a focus on audio recordings and highlighting new ways in which scientists who study orthopterans can engage in community science. Before the modern era, scientific discovery was commonly made by people who were not scientists by profession (Brenna 2011, Miller-Rushing et al. 2012). This began to change in the middle of the nineteenth century when science became highly academic, with greater “gatekeeping” of knowledge, and data collection became increasingly expensive. As a result, much of the knowledge gained during that time has been effectively withheld from non-scientists in difficult-to-obtain scientific journals, and there were few opportunities for the public to directly engage with scientific research. In recent years, there has been a concerted effort from the scientific community to change the way we engage with the public. These “citizen” or “community” science projects are filling gaps in the modern approach to scientific inquiry (Jordan et al. 2012, Toomey and Domroese 2013, Johnson et al. 2014). Here, we provide an overview of community science and highlight the exciting and unique role that community science can play in orthopteran research. We focus on how acoustic surveys can be used to study orthopteran biodiversity, provide best practices for orthopteran community science, and suggest future avenues for research.

On diversity of human-nature relationships in environmental sciences and its implications for the management of ecological crisis

Decision makers addressing the ecological crisis face the challenge of considering complex ecosystems in their socioeconomic decisions. Complementary to ecological sciences, other scientific frameworks, grouped under the umbrella term environmental sciences, offer decision makers the opportunity to pursue sustainable paths. Because the environmental sciences are drawn from different branches of science, environmental ethics must go beyond the legacy of ecology and the life sciences to describe the contribution of scientific knowledge to addressing the ecological crisis. In this regard, I analyze and compare three environmental sciences based on their seminal articles: Conservation Biology, Sustainability Science, and Sustainability Economics. My analysis shows that conservation biology and sustainability economics share strong similarities despite their different disciplinary backgrounds (life versus social sciences). Both seek to contrast a biocentric and an anthropocentric perspective. The goal of sustainability is therefore understood as a balance that must be found between these two perspectives. If the issue of balancing human and non-human interests is still relevant to sustainable science, it is more likely to take place in an ecocentric perspective based on alternative ontological and normative prescriptions. Based on this analysis, I distinguish between'proscriptive value-based' scientific work that cannot be used for policy advice but is flexible to different value systems, and'prescriptive value-based' scientific work that can be used for policy advice but is fixed within a given value system. Conflicting recommendations from environmental scientists therefore result from the coexistence of multiple 'prescriptive value-based' scientific approaches based on different conceptions of the relationship between humans and nature.

What's in a name? The paradox of citizen science and community science

Citizen science has expanded ecological and environmental sciences by actualizing studies across greater spatial and temporal scales while incorporating local expertise and interests that might otherwise be overlooked. Broadly, citizen science involves the public in the process of science. However, it continues to struggle to engage diverse participants. Citizen science project coordinators are increasingly trying to promote inclusivity by rebranding as community science to avoid the term citizen. Although well intentioned, rebranding efforts are uninformed by research because an evidence‐based understanding of these terms is lacking. On the basis of results from a survey distributed to participants in citizen and community science, we found differences in how well known and accepted the terms are, who is perceived as initiating and benefiting from the projects, and associated levels of inclusivity. Our findings have important implications for those involved in citizen and community science seeking to better describe projects in the future.

Ecological kin‐making in the multispecies muddle: An analytical framework for understanding embodied environmental citizen science experiences

AbstractDespite the current proliferation of citizen science projects, the affordances of ecological citizen science to generate transformational thinking amongst project participants are seldom considered. This study investigated citizen science as an experiential ecopedagogic praxis that may provide a context for developing relational perspectives and sensorial engagements between human and non‐human participants. A new humanist, phenomenological standpoint and narrative analysis framework were adopted. The narratives of five river monitoring citizen science participants are presented herein to illustrate an emergent Ecological kin‐making through citizen science framework. Participants’ narratives demonstrate how individuals engaged in caring practices through six embodied stages of ecological kin‐making through citizen science: encountering the river (1); recognising the non‐human world (2); river‐bank identification (3); developing a sense of response‐ability (4); enacting responsibility (5); and enhanced ecological kinship (6). As characterised by the infinity‐loop framework, citizen science emerges from this study as an attuned, ongoing, and caring praxis of ecological kin‐making. New co‐species kinship relationships are formed, maintained, and strengthened through participation. The study highlights that where citizen science projects are designed with a participant community focus, they can create the conditions for self‐directed and lifelong ecopedagogy that could be transformational for humans and non‐humans in times of ecological and climate crisis. The study implies the catalytic validity of citizen science to provide a space‐time context for participants to enact a ‘response‐ability’ toward local environments and human and non‐human dwellers, vital to enabling participants to experience a sense of agency and to take local action on environmental issues.

Assessing opportunities and inequities in undergraduate ecological forecasting education.

Conducting ecological research in a way that addresses complex, real-world problems requires a diverse, interdisciplinary and quantitatively trained ecology and environmental science workforce. This begins with equitably training students in ecology, interdisciplinary science, and quantitative skills at the undergraduate level. Understanding the current undergraduate curriculum landscape in ecology and environmental sciences allows for targeted interventions to improve equitable educational opportunities. Ecological forecasting is a sub-discipline of ecology with roots in interdisciplinary and quantitative science. We use ecological forecasting to show how ecology and environmental science undergraduate curriculum could be evaluated and ultimately restructured to address the needs of the 21st century workforce. To characterize the current state of ecological forecasting education, we compiled existing resources for teaching and learning ecological forecasting at three curriculum levels: online resources; US university courses on ecological forecasting; and US university courses on topics related to ecological forecasting. We found persistent patterns (1) in what topics are taught to US undergraduate students at each of the curriculum levels; and (2) in the accessibility of resources, in terms of course availability at higher education institutions in the United States. We developed and implemented programs to increase the accessibility and comprehensiveness of ecological forecasting undergraduate education, including initiatives to engage specifically with Native American undergraduates and online resources for learning quantitative concepts at the undergraduate level. Such steps enhance the capacity of ecological forecasting to be more inclusive to undergraduate students from diverse backgrounds and expose more students to quantitative training.

Centering Transgender And Gender Non-conforming Experience, Access, & Safety in Ecological Fieldwork.

Efforts to make ecological sciences more diverse, equitable, and inclusive require us to identify who is being left out and take action to rectify harmful situations. Recruitment of trainees from underrepresented groups alone is insufficient without ensuring a safe and supportive environment where we can flourish. Fieldwork is a critical component and often a requirement for career advancement in ecological sciences, but for transgender and gender non-conforming (TGnC) individuals, it can be disproportionately harmful. TGnC individuals face barriers and gendered violence before, during, and after fieldwork, and our experiences are often lost in current discussions of underrepresented groups in the field. In this article, I discuss the importance of an intersectional framework that focuses on planning, open communication, and trust, to address both the barriers TGnC trainees' experience with travel, accommodations, and access to medical care, along with their experiences of perceived and actual violence by colleagues and strangers. Additionally, I propose direct actions that those in power, such as Principal Investigators, field station managers, and mentors, can take to ensure a safe and welcoming fieldwork environment that supports TGnC trainees' physical, emotional, and professional well-being.

What constitutes a community? A co-occurrence exploration of the Costa Rican avifauna

ABSTRACT The concept of a “community” as a form of organization for natural biological systems is both widespread and widely accepted within the ecological and biological sciences. Communities have been defined as groups of organisms that interact in ways that denote interdependence between individuals and taxa (e.g. as defined by “food webs”) but they have also been defined as groups of co-occurring organisms that are assumed to interact by virtue of their shared spatiotemporal existence. The latter definition has been debated and challenged in the literature, with mounting evidence for co-occurrence being more indicative of coincident ecological niches in space and time rather than being evidence of ecological interaction or dependency. Using a dataset of 460 Costa Rican bird species divided into breeding and non-breeding season datasets, we empirically demonstrate the ways in which co-occurrence can create illusory communities based on similar occupied ecological niches and similar patterns of co-occurrence at different times of year. We discuss the importance of discerning coincidental co-occurrence from true ecological interactions that would manifest a true community, and further address the importance of differentiating communities of co-occurrence from communities of demonstrable ecological interaction. While co-occurrence is a necessary aspect of interspecific interactions, we discuss and demonstrate here that such co-occurrence does not make a community, nor should explicit patterns of co-occurrence be seen as evidence for evolutionarily important ecological interactions.

Improving ecological data science with workflow management software

AbstractPressing environmental research questions demand the integration of increasingly diverse and large‐scale ecological datasets as well as complex analytical methods, which require specialized tools and resources.Computational training for ecological and evolutionary sciences has become more abundant and accessible over the past decade, but tool development has outpaced the availability of specialized training. Most training for scripted analyses focuses on individual analysis steps in one script rather than creating a scripted pipeline, where modular functions comprise an ecosystem of interdependent steps. Although current computational training creates an excellent starting place, linear styles of scripting can risk becoming labor‐ and time‐intensive and less reproducible by often requiring manual execution. Pipelines, however, can be easily automated or tracked by software to increase efficiency and reduce potential errors. Ecology and evolution would benefit from techniques that reduce these risks by managing analytical pipelines in a modular, readily parallelizable format with clear documentation of dependencies.Workflow management software (WMS) can aid in the reproducibility, intelligibility and computational efficiency of complex pipelines. To date, WMS adoption in ecology and evolutionary research has been slow. We discuss the benefits and challenges of implementing WMS and illustrate its use through a case study with thetargets rpackage to further highlight WMS benefits through workflow automation, dependency tracking and improved clarity for reviewers.Although WMS requires familiarity with function‐oriented programming and careful planning for more advanced applications and pipeline sharing, investment in training will enable access to the benefits of WMS and impart transferable computing skills that can facilitate ecological and evolutionary data science at large scales.

Leaf angle as a leaf and canopy trait: Rejuvenating its role in ecology with new technology.

Life on Earth depends on the conversion of solar energy to chemical energy by plants through photosynthesis. A fundamental challenge in optimizing photosynthesis is to adjust leaf angles to efficiently use the intercepted sunlight under the constraints of heat stress, water loss and competition. Despite the importance of leaf angle, until recently, we have lacked data and frameworks to describe and predict leaf angle dynamics and their impacts on leaves to the globe. We review the role of leaf angle in studies of ecophysiology, ecosystem ecology and earth system science, and highlight the essential yet understudied role of leaf angle as an ecological strategy to regulate plant carbon-water-energy nexus and to bridge leaf, canopy and earth system processes. Using two models, we show that leaf angle variations have significant impacts on not only canopy-scale photosynthesis, energy balance and water use efficiency but also light competition within the forest canopy. New techniques to measure leaf angles are emerging, opening opportunities to understand the rarely-measured intraspecific, interspecific, seasonal and interannual variations of leaf angles and their implications to plant biology and earth system science. We conclude by proposing three directions for future research.

A strontium isoscape of northern Australia

Abstract. Strontium isotopes (87Sr/86Sr) are useful to trace processes in the Earth sciences as well as in forensic, archaeological, palaeontological, and ecological sciences. As very few large-scale Sr isoscapes exist in Australia, we have identified an opportunity to determine 87Sr/86Sr ratios on archived fluvial sediment samples from the low-density National Geochemical Survey of Australia. The present study targeted the northern parts of Western Australia, the Northern Territory, and Queensland, north of 21.5∘ S. The samples were taken mostly from a depth of ∼60–80 cm in floodplain deposits at or near the outlet of large catchments (drainage basins). A coarse (<2 mm) grain-size fraction was air-dried, sieved, milled, and digested (hydrofluoric acid + nitric acid followed by aqua regia) to release total Sr. The Sr was then separated by chromatography, and the 87Sr/86Sr ratio was determined by multicollector inductively coupled plasma mass spectrometry. The results demonstrate a wide range of Sr isotopic values (0.7048 to 1.0330) over the survey area, reflecting a large diversity of source rock lithologies, geological processes, and bedrock ages. The spatial distribution of 87Sr/86Sr shows coherent (multi-point anomalies and smooth gradients), large-scale (>100 km) patterns that appear to be broadly consistent with surface geology, regolith/soil type, and/or nearby outcropping bedrock. For instance, the extensive black clay soils of the Barkly Tableland define a >500 km long northwest–southeast-trending unradiogenic anomaly (87Sr/86Sr <0.7182). Where sedimentary carbonate or mafic/ultramafic igneous rocks dominate, low to moderate 87Sr/86Sr values are generally recorded (medians of 0.7387 and 0.7422, respectively). Conversely, In proximity to the outcropping Proterozoic metamorphic basement of the Tennant, McArthur, Murphy, and Mount Isa geological regions, radiogenic 87Sr/86Sr values (>0.7655) are observed. A potential correlation between mineralization and elevated 87Sr/86Sr values in these regions needs to be investigated in greater detail. Our results to date indicate that incorporating soil/regolith Sr isotopes in regional, exploratory geoscience investigations can help identify basement rock types under (shallow) cover, constrain surface processes (e.g. weathering and dispersion), and, potentially, recognize components of mineral systems. Furthermore, the resulting Sr isoscape and future models derived therefrom can also be utilized in forensic, archaeological, palaeontological, and ecological studies that aim to investigate, for example, past and modern animal (including humans) dietary habits and migrations. The new spatial Sr isotope dataset for the northern Australia region is publicly available (de Caritat et al., 2022a; https://doi.org/10.26186/147473).

The value of question‐first citizen science in urban ecology and conservation

AbstractCitizen‐science projects focused on ecology and conservation have been growing in popularity in recent years, offering many opportunities for researchers and volunteers alike. Two principal approaches to citizen‐science projects in ecology can be characterized as the data‐first approach and the question‐first approach. Here, we highlight the value of question‐first citizen‐science projects for providing insights into the ecology and management of urban wildlife, using case studies on (1) beneficial insects (pollinators, predators and parasitoids) and (2) possums and gliders in Australian cities and towns. The question‐first approach has many benefits, offering a platform to engage volunteers with the scientific process and the broader context of an ecological or conservation problem, while also connecting them with their local environment. Identifying the questions to be addressed in a citizen‐science project ahead of data collection allows for co‐design and stronger collaboration with volunteers, community groups, local experts, and landscape managers. Question‐first citizen science can also provide valuable ecological data that extend substantially beyond presence‐only records, including presence‐absence data collected via timed surveys and information on animal behavior and interspecific interactions. However, establishing and maintaining question‐first citizen‐science projects can be challenging, requiring the building and maintenance of many relationships and a multidisciplinary approach that goes well beyond the usual activities of an academic researcher. Well‐designed, question‐first citizen science has the capacity to achieve both scientific rigor and meaningful engagement with volunteer participants.

Ecospirituality in French-Speaking Europe: Linking Ecological Thought with Alternative Spirituality

Contemporary ecospirituality is built on a double articulation between ecology (science) and spirituality (religion) and can be intertwined with practices and beliefs stemming from neopaganism and, more broadly, an animist vision. The study presented here is anchored in social anthropology, which adds an important empirical dimension that is often underrepresented within the contemporary debates of ecospirituality and the philosophical approaches to science and religion. I therefore propose to begin by describing the methodology I am using. Then, I will outline the sociological (and historical) roots of ecospirituality. Thirdly, I will present the main different currents that make up ecospirituality. Finally, I will end this article by exposing the different types of knowledge produced by ecospiritual actors, reconciling intuitive knowledge and rational knowledge.

Filling global gaps in monitoring data with local knowledge

Filling global gaps in monitoring data with local knowledge

Integrating the resilience concept into ecosystem restoration

Restoring resilient ecosystems is critical to preparing for the uncertain effects of climatic change on ecosystem functioning and socially relevant services. The UN Decade on Ecosystem Restoration attempts to inspire the global ecological restoration movement, reverse degradation, and mitigate climate change impacts. We present ways in which resilience might be further integrated into the science of restoration ecology and the practice of ecological restoration to address the uncertainty associated with the current impacts of adverse climatic change. We describe how incorporating meaningful community engagement, expanding monitoring indicators, and upscaling across spatial–temporal scales will improve the current state of ecosystem restoration. We present case studies of restoration approaches across Southeast Asia that utilize approaches that confer resilience (resistance, recovery, reorganization) in their restoration projects and their broader social‐ecological systems. The panarchy framework encapsulates the importance of strengthening relationships between all stakeholders and restoration projects to build resilience across larger spatial–temporal scales.

Marxian Ecology, East and West: Joseph Needham and a Non-Eurocentric View of the Origins of China’s Ecological Civilization

ABSTRACT What is referred to here as the Needham thesis, after Joseph Needham, author of Science and Civilization in China , points to the strong affinity in China for dialectical materialism, and through it to modern ecological science, arising from the parallel roots in organic materialism associated with ancient Epicureanism in the West (which influenced classical Marxism) and ancient Daoist and Confucian philosophies in China. This parallel development of organic materialism in Europe (where it was largely submerged in the dominant capitalist culture) and in China embodied in each case deep ecological conceptions. Hence, dialectical materialism, once it arrived in China, served to mediate between these organic traditions within the framework of modern materialist science. It was in this general context that the notion of ecological civilization, arising initially in the last years of the USSR, was carried forward to China, where it took on added meaning. China’s own peasant-based revolution has induced further ecological developments. As a result of this general convergence, and due to China’s reemergence on the world stage, ecological Marxism is now rapidly coevolving in both East and West.

How to Get a Job Offer from a Smaller Joint Teaching‐Research Mission University and What to Do Once You Have It

How to Get a Job Offer from a Smaller Joint Teaching‐Research Mission University and What to Do Once You Have It

The importance of open data describing prey item species lists for endangered species

Abstract Open data and code can be transformative tools in supporting evidence‐informed solutions for stakeholders. Data can take many forms of evidence in the discipline of applied ecology including tables, lists, maps and visualizations to name a few. Endangered and listed species are often a catalyst for research, conservation and planning. Here, a novel, open data set summarizing all the reported diet and prey items for all endangered, terrestrial dryland species listed in central California is provided as a case study. These data highlight the critical need for sharing data rapidly and transparently to support ecological solution science. Systematic review practices were used, data were compiled and the resulting data set was published in an open access, federated data repository using ecological metadata language and FAIR principles. The goal is to show that these data can now be used and analysed by applied ecologists and stakeholders to identify not only the habitat and spatial needs for the endangered species but to widen the conservation protection net to include prey species. Conserving viable habitat with higher likelihoods of prey presence will better support conservation of endangered species, and data describing reported species are a crucial first step. Interactive tables, local species lists and maps are simple tools that can now be developed regionally with open data such as these.

Teaching Systems Thinking and System Dynamics in Engineering, Ecology and Environmental Sciences: A Concise Course Based on the Water Management and Population Dynamics Models

Teaching Systems Thinking and System Dynamics in Engineering, Ecology and Environmental Sciences: A Concise Course Based on the Water Management and Population Dynamics Models