As modern web applications continue to evolve, secure and scalable APIs have become essential building blocks for dynamic, data-driven platforms. Java Spring Boot, renowned for its developer-friendly approach and extensive ecosystem serves as a common foundation for implementing microservice APIs. Two prominent architectural styles, RESTful and GraphQL, each offer distinct approaches to request handling, data fetching, and schema management in a microservices or distributed environment. This paper presents an extensive study of REST vs. GraphQL for developing secure and scalable APIs in Spring Boot, focusing on performance, data modeling, ease of adoption, and real-world pitfalls. We examine security best practices covering authentication, authorization, and data encryption while highlighting scaling techniques such as load balancing, container orchestration, and caching. Through diagrams, code snippets, and references to real-world scenarios, we provide a practical guide for architects and developers aiming to choose the right approach. In doing so, we also discuss known anti-patterns that undermine security or hamper throughput, and propose best practices to ensure robust, future-proof APIs. Keywords Java Spring Boot, REST, GraphQL, Microservices, Security, Scalability, API Design, Authentication, Authorization, Cloud-Native
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