In this article, a novel synchronization scheme, modified function projective lag synchronization (MFPLS) in two different dimensional chaotic systems with parameter perturbations, is proposed. In the proposed method, the states of two nonidentical chaotic systems with different orders are asymptotically lag synchronized up to a desired scaling function matrix by means of reduced order and increased order, respectively. Furthermore, based on the reality situation, the parameter perturbations are involved, which are assumed to appear in both drive and response systems. With the Lyapunov stability theory, an adaptive controller is designed to achieve MFPLS. Theoretical proof and numerical simulations demonstrate the effectiveness and feasibility of the proposed scheme.