Scaled Quantum Mechanical Force Field Research Articles

Structural and vibrational analyses of 2‐(2‐benzofuranyl)‐2‐imidazoline

AbstractWe have studied 2‐(2‐benzofuranyl)‐2‐imidazoline (BFI) and characterized it by using infrared and Raman spectroscopies. The density functional theory (DFT) method together with Pople's basis set shows that two conformers exist for the title molecule as have been theoretically determined in the gas phase and that, probably, an average of both conformations is present in the solid phase. The harmonic vibrational wavenumbers for the optimized geometry of the latter conformer were calculated at the B3LYP/6‐31G* level in the proximity of the isolated molecule. For a complete assignment of the IR and Raman spectra in the compound in the solid phase, DFT calculations were combined with Pulay's scaled quantum mechanics force field (SQMFF) methodology in order to fit the theoretical wavenumbers to the experimental ones. Copyright © 2010 John Wiley & Sons, Ltd.

Vibrational spectra and natural bond orbital analysis of the herbicidal molecule 2(4-chlorophenoxy)-2-methyl propionic acid

The herbicide 2(4-chlorophenoxy)-2-methyl propionic acid (MCPP) has been subjected to NIR FT–Raman and infrared spectral studies. The optimized molecular structure, vibrational wavenumbers, IR intensities and Raman activities have been calculated by using density functional method (B3LYP) with the standard 6-31G(d) basis set. The calculated molecular geometry has been compared with the XRD data. The detailed assignments of the normal modes have been performed based on the potential energy distribution (PED) following the scaled quantum mechanical force field (SQMFF) methodology. The IR and Raman spectra have been plotted for the calculated wavenumbers. The simulated spectra satisfactorily coincide with the experimental spectra. The strong hyperconjugative interaction and charge delocalization that leads to the stability of the molecule have been investigated with the aid of natural bond orbital (NBO) analysis.

Molecular structure, vibrational spectroscopic (FT-IR, FT-Raman), UV and NBO analysis of 2-chlorobenzonitrile by density functional method

In this work, we will report a combined experimental and theoretical study on molecular structure, vibrational spectra, NBO and UV spectral analysis of 2-chlorobenzonitrile (2-ClBN). The FT-IR solid phase (4000–400 cm −1), and FT-Raman spectra (3500–50 cm −1) of 2-ClBN was recorded. The molecular geometry, harmonic vibrational frequencies and bonding features of 2-ClBN in the ground state have been calculated by using the density functional methods (BLYP, B3LYP) with 6-31G(d,p) as basis set. The assignments of the vibrational spectra have been carried out with the help of normal co-ordinate analysis (NCA) following the Scaled Quantum Mechanical Force Field Methodology (SQMFF). Stability of the molecule arising from hyper conjugative interactions, charge delocalization has been analyzed using natural bond orbital (NBO) analysis. The results show that charge in electron density (ED) in the σ* and π* anti bonding orbitals and E2 energies confirms the occurrence of ICT (Intra molecular Charge Transfer) within the molecule. The UV spectrum was measured in ethanol solution. The energy and oscillator strength calculated by Time-Dependent Density Functional Theory (TD-DFT) results complements with the experimental findings. The calculated HOMO and LUMO energies also confirm that charge transfer occurs within the molecule. Finally calculated results were applied to simulated Infrared and Raman spectra of the title compound which show good agreement with observed spectra.

Quantum mechanical study of the structure and spectroscopic (FT-IR, FT-Raman, 13C, 1H and UV), first order hyperpolarizabilities, NBO and TD-DFT analysis of the 4-methyl-2-cyanobiphenyl

The Fourier transform infrared (FT-IR) and FT-Raman of 4-methyl-2-cyanobiphenyl (4M2CBP) have been recorded and analyzed. The equilibrium geometry, bonding features and harmonic vibrational frequencies have been investigated with the help of density functional theory (DFT) method. The assignments of the vibrational spectra have been carried out with the help of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology (SQMFF). The 1H and 13C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by the Gauge including atomic orbital (GIAO) method. The first order hyperpolarizability ( β 0) of this novel molecular system and related properties ( β, α 0 and Δ α) of 4M2CBP are calculated using HF/6-311G(d,p) method on the finite-field approach. Stability of the molecule arising from hyperconjugative interactions, charge delocalization have been analyzed using natural bond orbital (NBO) analysis. The results show that charge in electron density (ED) in the σ* and π* antibonding orbitals and second order delocalization energies ( E 2) confirms the occurrence of intramolecular charge transfer (ICT) within the molecule. UV–vis spectrum of the compound was recorded and the electronic properties, such as HOMO and LUMO energies, were performed by time-dependent density functional theory (TD-DFT) approach. Finally the calculations results were applied to simulated infrared and Raman spectra of the title compound which show good agreement with observed spectra.

Electronic absorption, vibrational spectra and nonlinear optical properties of N-(2 chlorophenyl)-1-propanamide

FT-Raman, IR and UV–vis spectroscopies have been applied to investigate the potential nonlinear optical (NLO) material N-(2 chlorophenyl)-1-propanamide. A detailed interpretation of the vibrational spectra was carried out with the aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology. Density functional theory is applied to explore the nonlinear optical properties of the molecule. The study suggests the importance of π-conjugated systems for nonlinear optical properties and the possibility of charge transfer interactions. Good consistency is found between the calculated results and experimental data for the electronic absorption, IR and Raman spectra. The solvent effects have been calculated using time-dependent density functional theory in combination with the polarized continuum model, and the results are in good agreement with experimental measurements.

A new vibrational study of Acetazolamide compound based on normal coordinate analysis and DFT calculations

We have studied the 5-acetamido-1,3,4-thiadiazole-2-sulphonamide compound and characterized it by infrared and Raman spectroscopy in the solid phase. The Density Functional Theory (DFT) method together with Pople’s basis set show that two stable molecules for the compound have been theoretically determined in the gas phase, and that only the more stable conformation is present in the solid phase, as was experimentally observed. The harmonic vibrational wavenumbers for the optimized geometry were calculated at B3LYP/6-31G ∗ and B3LYP/6-311++G ∗∗ levels at the proximity of the isolated molecule. For a complete assignment of the vibrational spectra in the compound solid, DFT calculations were combined with Pulay´s Scaled Quantum Mechanics Force Field (SQMFF) methodology in order to fit the theoretical wavenumber values to the experimental ones. In this way, a complete assignment of all of the observed bands in the infrared spectrum for the compound was performed. The natural bond orbital (NBO) study reveals the characteristics of the electronic delocalization of the two structures, while the corresponding topological properties of electronic charge density are analysed by employing Bader’s Atoms in the Molecules theory (AIM).

Electronic and structural effects on the nonlinear optical behavior in π‐conjugated structure bis(4‐nitrophenyl) carbonate: a vibrational spectroscopic approach

AbstractFourier transform (FT)‐Raman and infrared (IR) spectra of the nonlinear optical (NLO) material bis(4‐nitrophenyl) carbonate were recorded and analyzed. The geometry, first hyperpolarizability and harmonic vibrational wavenumbers were calculated with the help of Becke3–Lee–Yang–Parr density functional theory method. The detailed interpretation of the vibrational spectra was carried out with the aid of normal coordinate analysis following the scaled quantum mechanical force field methodology. The second‐order NLO properties of the molecule were studied by the Kurtz and Perry powder reflection technique. Stability of the molecule arising from hyperconjugative interactions leading to its NLO activity and charge delocalization were analyzed using natural bond orbital analysis. Copyright © 2010 John Wiley & Sons, Ltd.

Structural and nonlinear optical properties of cross‐conjugated system benzophenone thiosemicarbazone: a vibrational spectroscopic study

AbstractThe nonlinear optical (NLO) compound of interest benzophenone thiosemicarbazone (BTSC) was grown and the molecular structure generated with the aid of density functional theory (DFT). FT‐Raman and IR spectra were recorded and analyzed. The harmonic wavenumbers and IR and Raman intensities were computed with the B3LYP method. The observed vibrational wavenumbers were compared with the calculated results. The assignments of the experimental spectra were made with the help of normal coordinate analysis (NCA) following the scaled quantum mechanical force field (SQMFF) methodology. The electronic structure of the most important molecular fragments is described in terms of natural bond orbital (NBO) analysis. Copyright © 2010 John Wiley & Sons, Ltd.

DFT and MP2 based quantum mechanical calculations and a theoretical vibrational spectroscopic investigation on roscovitine, a potential drug to treat cancers

AbstractTheoretically possible stable conformers of free roscovitine molecule in its electronic ground state were searched by means of molecular dynamics and energy minimization calculations performed using the MM2 force field. Afterwards, geometry optimization and thermochemistry calculations were carried out at room temperature for each of the found minimum‐energy conformers using the MP2 and DFT based electronic structure methods and different Pople‐style basis sets. The results obtained from these calculations confirmed that the strong intramolecular hydrogen bonding between the purine‐nitrogen and hydroxyl‐hydrogen atoms plays an important role on the rigidity of roscovitine molecule and causes a dramatic reduction in the number of the possible stable conformers of this molecule at room temperature. Furthermore, the same calculation results also revealed that two of the found seven stable conformers are considerably more favorable in energy than the others and thus dominate the experimental room‐temperature spectra of the molecule. In the light of the theoretical vibrational spectral data obtained for these two conformers, a successful assignment of the fundamental bands observed in the experimental IR and Raman spectra recorded at room temperature for solid roscovitine and for its ethanol solution is given, and the effects of the substitution and intramolecular hydrogen bonding on the fundamental bands associated with purine and phenyl group vibrations are discussed in detail. In the fitting of the calculated harmonic wavenumbers to the corresponding experimental wavenumbers, two different scaling procedures, called ‘dual scale factors’ and ‘Scaled Quantum Mechanical Force Field (SQM FF) methodology’, were applied independently. Both procedures yielded results generally in good agreement with the experiment; however, the SQM FF methodology proved its superiority over the other. Copyright © 2010 John Wiley & Sons, Ltd.

ChemInform Abstract: Assignment of the Fundamental Frequencies of p-Benzoquinone: A Scaled Quantum Mechanical Force Field Study.

The recently developed unrestricted Hartree-Fock natural orbital-complete active space (UNO-CAS) method is applied to the determination of the geometry and force field of p-benzoquinone. With an active space consisting of eight electrons distributed in eight π orbitals (8×8) and the 6-31G* basis set, UNO-CAS predicts CC and CO distances in good agreement with gas electron diffraction results. The full quadratic force field is obtained by an empirical scaling of the 8×8 UNo-CAS/4-21G force constants evaluated at the 6-31G* UNO-CAS geometry

Vibrational spectra and first-order molecular hyperpolarizabilities of p-hydroxybenzaldehyde dimer

Single crystals of p-hydroxybenzaldehyde (PHBA) were grown by the slow evaporation technique and vibrational spectral analysis was carried out using near-IR Fourier transform Raman and Fourier transform IR spectroscopy. The density functional theoretical (DFT) computations were also performed at the B3LYP/6-311++G(d,p) level to derive the equilibrium geometry, vibrational wavenumbers and intensities. The detailed interpretation of the vibrational spectra has been carried out with the aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology. The various intramolecular interactions that is responsible for the stabilization of the molecule was revealed by natural bond orbital analysis. Vibrational analysis based on the NIR-FT-Raman, FT-IR and computed spectrum reveals that the CH in-plane bending of the aldehyde group interacts with its stretching mode via Fermi Resonance and evidence for intermolecular interaction can be well identified as two CH bands in IR spectra at 2740 and 2804 cm −1 aldehyde group of the p-hydroxybenzaldehyde dimer. The red shift of the O–H stretching wavenumber is due to the formation of strong O–H⋯O hydrogen bonds by hyperconjugation between the carbonyl oxygen lone electron pairs and the O–H σ * anti-bonding orbitals.

An experimental and theoretical vibrational spectroscopic study on niflumic acid, a non-steroidal anti-inflammatory drug

The theoretically possible stable conformers of niflumic acid (NFA) molecule in electronic ground state were investigated by means of potential energy surface scan and thermochemistry calculations carried out at room temperature using DFT-B3LYP method and different Pople-style basis sets. The data obtained from these calculations confirmed that the two planar conformers in which the carboxyl and fluoromethyl functional groups are located either in “trans” or in “cis” position to each other are the most favorable ones in energy among all the stable conformers of the free molecule. This conclusion was also confirmed by the energy values obtained from the higher-accuracy thermochemistry calculations carried out using G3MP2B3 composite method. For both conformers and also for their most favorable dimer forms in energy, the equilibrium geometry, force field and vibrational spectral data were calculated first at B3LYP/6-31G(d) and then at B3LYP/6-311++G(d,p) levels of theory. On the basis of these theoretical data, the effects of the conformation and dimerization on the corresponding experimental data of NFA molecule were discussed in detail. The overestimations of the calculated harmonic wavenumbers were corrected by the aid of two different empirical scaling procedures referred to as “scaled quantum mechanical force field (SQM FF) methodology” and “dual scale factors”. In the light of the improved theoretical data obtained in these two approaches applied independently from each other, a successful assignment of the fundamental bands observed in the room-temperature IR and Raman spectra of the molecule was given.

Density Functional Theory Calculations of the Molecular Force Field ofl-Ascorbic Acid, Vitamin C

We have studied L-ascorbic acid and characterized it by infrared spectroscopy in solid and aqueous solution phases. The density functional theory (DFT) method together with Pople's basis set show that three stable molecules for the compound have been theoretically determined in the gas phase, and that an average of only two more stable conformations are present in the solid phase, as it was experimentally observed. The harmonic vibrational wavenumbers for the optimized geometries of both structures were calculated at B3LYP/6-31G*and B3LYP/6-311++G** levels at the proximity of the isolated molecule. For a complete assignment of the vibrational spectra in the compound solid and aqueous solution phases, DFT calculations were combined with Pulay's scaled quantum mechanics force field methodology in order to fit the theoretical wavenumber values to the experimental ones. In this way, a complete assignment of all the observed bands in the infrared spectrum for l-ascorbic acid was performed. The natural bond orbital study reveals the characteristics of the electronic delocalization of the three structures while the corresponding topological properties of electronic charge density are analyzed by employing Bader's atoms-in-molecules theory.

Gas-phase structure, rotational barrier and vibrational properties of trimethylsilyl trifluoroacetate CF 3C(O)OSi(CH 3) 3: An experimental and computational study

The molecular structure of trimethylsilyl trifluoroacetate, CF 3C(O)OSi(CH 3) 3, has been determined in the gas phase from electron-diffraction data supplemented by ab initio (MP2) and DFT calculations using 6-31G(d), 6-311G(d,p), 6-311++G(d,p) and 6-311++G(3df,3pd) basis sets. Experimental data indicate that only one conformer, with C s symmetry [dihedral angle ϕ(CCOSi) = 180°, and all groups staggered], is observed in the gas phase. Theoretical data indicate that both this anti conformer and a gauche conformer, created by rotating about the C(O) O bond, are possible, although the preferred conformation is the staggered anti one. The torsional energies for different values of the CCOSi and COSiC dihedral angles have been calculated using the RHF, MP2 and B3LYP methods with the 6-311++G(d,p) basis set. For rotation around the CC OSi bond, a sixfold decomposition of the rotational barrier has been performed in terms of a Fourier-type expansion, enabling us to analyze the nature of the potential function, showing that the coefficients related to electrostatic interactions and steric effects are the dominant terms. The preference for the anti conformation was studied using the total-energy scheme, comparison of dipole moments, and the natural bond orbital partition scheme. The infrared spectra for the liquid and gas phases and the Raman spectrum for the liquid phase have also been recorded and the observed bands assigned to the vibrational normal modes. The experimental vibrational data, along with calculated theoretical force constants, were used to define a scaled quantum mechanical force field for the target system that enabled us to estimate the measured frequencies with a final root-mean-square deviation of 9.7 cm −1.

Vibrational contributions to the second-order nonlinear optical properties of π-conjugated structure acetoacetanilide

FT-Raman and IR spectra of the nonlinear optic (NLO) crystal, acetoacetanilide have been recorded and analyzed. The detailed interpretation of the vibrational spectra has been carried out with the aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology. The various intramolecular interactions that is responsible for the stabilization of the molecule was revealed by natural bond orbital analysis. The Kurtz and Perry powder reflection technique appeared to be very effective in studies of second-order nonlinear optical properties of the molecule.

Electronic absorption and vibrational spectra and nonlinear optical properties of 4-methoxy-2-nitroaniline

FT-Raman, IR and UV-vis spectroscopies have been applied to investigate the potential nonlinear optical (NLO) material 4-methoxy-2-nitroaniline. A detailed interpretation of the vibrational spectra was carried out with the aid of normal coordinate analysis following the scaled quantum mechanical force field methodology. Density functional theory is applied to explore the nonlinear optical properties of the molecule. The study suggests the importance of pi-conjugated systems for nonlinear optical properties and the possibility of charge transfer interactions. Good consistency is found between the calculated results and experimental data for the electronic absorption, IR and Raman spectra. The solvent effects have been calculated using time-dependent density functional theory in combination with the polarized continuum model, and the results are in good agreement with experimental measurements. The calculations reveal that incorporation of substituents (amino, nitro and methoxy) has a strong influence on the structure and spectroscopic properties of the molecule, and the effect of electron charge transfer was examined by natural bond orbital population analysis.

Vibrational spectra and normal coordinate analysis of plant growth regulator 1-naphthalene acetamide

FT Raman and IR spectra of the biologically active molecule, 1-naphthalene acetamide (NA) have been recorded and analyzed. The equilibrium geometry, bonding features and harmonic vibrational wavenumbers of NA have been calculated with the help of B3LYP density functional theory (DFT) method. The assignments of the vibrational spectra have been carried out with the help of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology (SQMFF). The downshifting of NH 2 stretching wavenumber indicates the formation of intermolecular N–H⋯O hydrogen bonding. The NBO analysis confirms the occurrence of strong intermolecular hydrogen bonding in the molecule.

The spectroscopic (FT-IR, FT-IR gas phase, FT-Raman and UV) and NBO analysis of 4-Hydroxypiperidine by density functional method

In this work, we report a combined experimental and theoretical study on molecular structure, vibrational spectra, NBO and UV-spectral analysis of 4-Hydroxypiperidine (4-HP). The FT-IR solid phase (4000–400 cm −1), FT-IR gas phase (5000–400 cm −1) and FT-Raman spectra (3500–50 cm −1) of 4-HP was recorded. The molecular geometry, harmonic vibrational frequencies and bonding features of 4-HP in the ground-state have been calculated by using the density functional methods (BLYP, B3LYP) with 6-311G (d,p) as basis set. The assignments of the vibrational spectra have been carried out with the help of normal co-ordinate analysis (NCA) following the Scaled Quantum Mechanical Force Field Methodology (SQMFF). Stability of the molecule arising from hyperconjugative interactions, charge delocalization has been analyzed using natural bond orbital (NBO) analysis. The results show that charge in electron density (ED) in the σ * antibonding orbitals and E (2) energies confirms the occurrence of ICT (Intra-molecular Charge Transfer) within the molecule. The UV spectrum was measured in ethanol solution. The energy and oscillator strength calculated by Time-Dependent Density Functional Theory (TD-DFT) result complements the experimental findings. The calculated HOMO and LUMO energies show that charge transfer occurs within the molecule. Finally the calculation results were applied to simulated infrared and Raman spectra of the title compound which show good agreement with observed spectra.

Identification of the high-energy conformer of octa-1,3,5,7-tetraene detected in the one-photon excitation fluorescence spectrum

Scaled quantum-mechanical force field (SQM-FF) vibrational analyses at the HF/6-31G//HF/6-31G computational level of the gauche, Trans,trans,Trans,trans-, gauche,Trans,trans,Cis,trans-, trans,Trans,gauche,Trans,trans-, and trans,Cis,trans,Trans,trans-conformers of octa-1,3,5,7-tetraene were used to identify the rotational isomer observed in the one-photon excitation fluorescence spectrum of this conjugated molecule (Ackerman et al. in J Chem Phys 80:39–44, 1984) as the gauche,Trans,trans,Trans,trans (gTtTt)-conformer. The analysis was performed by comparing the RMS deviations of the 14 fundamental wavenumbers assigned to the high-energy conformer of octa-1,3,5,7-tetraene in the fluorescence spectrum with those calculated for these conformers. Some reassignments of the wavenumbers, originally suggested by experimental observations, were required for the current analysis. The non-planar structure of gTtTt-octa-1,3,5,7-tetraene was calculated to have the terminal –CH=CH2 moiety rotated by ~30.5° with respect to the remainder of the nearly planar skeleton using both the HF/6-31G and MP2(FC)/aug-cc-pVDZ computational levels. The barriers to rotation of the –CH=CH2 moiety at the MP2(FC)/aug-cc-pVDZ level were as follows: rotation from the lowest-energy planar all-trans conformer to the non-planar gTtTt-conformer was 31.4 kJ/mol; rotation from the gTtTt-conformer to the planar all-trans conformer was 18.0 kJ/mol; and the barrier between the two equivalent gTtTt-octa-1,3,5,7-tetraene conformers was only 1.4 kJ/mol.

Conformational and Vibrational Analysis of Methyl Methanesulfonate, CH3SO2OCH3

The molecular structure of methyl methanesulfonate, CH(3)SO(2)OCH(3), has been optimized by using methods based on density functional theory, coupled cluster, and Moller-Plesset second order perturbation theory (MP2). With regard to CH(3)SO(2)OCH(3), two populated conformations with symmetries C(s) and C(1) are obtained, the former being more stable than the latter. The theoretical data indicate that although both anti and gauche conformers are possible by rotation about the S-O bond, the preferred conformation is anti. The total energy as a function of the CSOC dihedral angle has been calculated using the MP2 method with the 6-31G(d) and cc-pVDZ basis sets and the hybrid functional B3LYP using 6-31G(d), 6-311G(d,p), and 6-311++G(d,p) basis sets. A natural bond orbital analysis showed that the lone pair --> sigma* hyperconjugative interactions favor the anti conformation. Furthermore, the infrared spectra for the liquid and solid phases, the Raman spectrum for the liquid one, and the inelastic neutron scattering spectrum of the solid phase have been recorded, and the observed bands have been assigned to the vibrational modes. The experimental vibrational data, along with calculated theoretical force constants, were used to define a scaled quantum mechanical force field for the target system that enabled us to fit the measured frequencies with a final root-mean-square deviation of 10 cm(-1).