Salmonid Smolts Research Articles

Route use of emigrating steelhead in a heavily modified river delta

Abstract Objective Low survival of emigrating salmonid smolts through the interior regions of California's Sacramento–San Joaquin River Delta (hereafter, “Delta”) and large-scale water extraction from that region have prompted managers to seek to predict and manipulate smolt route use through the tidal Delta. The local flow variables previously used in modeling are not the metrics used in management. Here, I investigate the predictive utility of variables representing both localized flow conditions and remote management metrics to predict routing of juvenile steelhead Oncorhynchus mykiss at two river junctions on the San Joaquin River in the south Delta. Methods Individual-based generalized linear models were used with detections of over 4000 acoustic-tagged juvenile hatchery-reared steelhead to relate routing to the presence of a rock barrier, simulated localized flow conditions from a hydrodynamic model, and daily management metrics, including upstream river discharge and water pumping rates elsewhere in the Delta. Models were developed for the first two diffluences encountered by smolts entering the Delta (head of Old River and Turner Cut). Result Exclusive use of the management metrics in routing models underestimated the subdaily, tidally dominated fluctuations in fish routing compared to localized flow covariates. The daily rate of water extraction 20–30 km away contributed to use of non-main-stem routes, but the effect was small compared to subhourly flow conditions at the river junctions themselves. Conclusion Water resource and fish managers are advised to monitor conditions at the locations of interest rather than depending solely on remote metrics. In the Delta, use of a flow barrier and reduction of water pumping operations when smolts are migrating should be combined with habitat improvement in interior Delta regions to optimize migratory survival through this complex and heavily modified system.

Downstream migration of landlocked Atlantic salmon smolt in a regulated river—Effects of multiple passage at dams with programmed spill

AbstractIn many rivers, downstream‐migrating salmonid smolts must pass multiple dams often with high losses as a result. Fish experience mortality both in dam and reservoir passage, and spilling water might allow fish to avoid turbine passage and hence increase migration survival. In River Klarälven, Sweden landlocked Atlantic salmon smolts migrate along a 180 km long reach passing eight dams. A previous telemetry study estimated an accumulated migration success of 16% under conditions with no or very little spill. Here we repeat this study, under a planned spill regime at a subset of hydropower dams. Overall passage success through the eight dams was 32%, which is greater than the 16% reported from the same river section in a year without spill. Most of this increase, however, was attributable to the situation at one dam, where spill constituted a large proportion of total discharge. In addition, we found that loss rates km−1 were similar over dammed reaches and the lentic habitats, but greater than in the free‐flowing reference reaches. Results for migration speed paralleled this result with the highest speeds observed in the free‐flowing reaches.

Potential Impact of Climate Change on Salmonid Smolt Ecology

The migratory life history of anadromous salmonids requires successful migration between nursery, feeding, and spawning habitats. Smolting is the major transformation anadromous salmonids undergo before migration to feeding areas. It prepares juvenile fish for downstream migration and their entry to seawater. We reviewed the effects of climate change on smolt ecology from the growth of juveniles in fresh water to early post-smolts in the sea to identify the potential effects of climate change on migratory salmonid populations during this period in their life history. The focus was especially on Atlantic salmon. The shift in suitable thermal conditions caused by climate change results in Atlantic salmon expanding their range northward, while at the southern edge of their distribution, populations struggle with high temperatures and occasional droughts. Climatic conditions, particularly warmer temperatures, affect growth during the freshwater river phase. Better growth in northern latitudes leads to earlier smolting. Thermal refuges, the areas of cooler water in the river, are important for salmonids impacted by climate change. Restoring and maintaining connectivity and a suitably diverse mosaic habitat in rivers are important for survival and growth throughout the range. The start of the smolt migration has shifted earlier as a response to rising water temperatures, which has led to concerns about a mismatch with optimal conditions for post-smolts in the sea, decreasing their survival. A wide smolt window allowing all migrating phenotypes from early to late migrants’ safe access to the sea is important in changing environmental conditions. This is also true for regulated rivers, where flow regulation practices cause selection pressures on migrating salmonid phenotypes. The freshwater life history also affects marine survival, and better collaboration across life stages and habitats is necessary among researchers and managers to boost smolt production in rivers. Proactive measures are recommended against population declines, including sustainable land use in the catchment, maintaining a diverse mosaic of habitats for salmonids, restoring flow and connectivity, and conserving key habitats.

Infestation rates of lice Lepeophtheirus salmonis and Caligus elongatus on Atlantic salmon in fixed and towed sentinel cages.

Sea lice are a key limitation to sustainable salmon aquaculture, and effective monitoring strategies are critical for the management of these parasites. Sentinel cages are an established means of assessing infestation pressure at fixed locations, but as smolts move through systems they will be exposed to varying lice densities. As a means of assessing infestation pressure along trajectories, we describe the development and application of towed sentinel cages (TSCs) in a Scottish sea loch containing salmonid aquaculture. Trial deployments took place over 3 yr (2016-2018), and levels of sea lice infestation were compared between methodologies. Oceanographic data was collected alongside TSCs to put the results into the environmental context that smolts and sea lice experienced during the tows. The sea lice infestation rates found from TSCs were comparable to those on contemporaneously deployed fixed sentinel cages. Thus, due to their practicability and consistency with other surveillance methods, TSCs could be used to improve the assessment of exposure risk along wild salmonid smolt migration trajectories, where these are known.

The benefits of merging passive and active tracking approaches: New insights into riverine migration by salmonid smolts

AbstractThe process of smolting is a critical phase in the life cycle of anadromous salmonids, and it has been associated with substantial rates of mortality. Survival during freshwater and marine migration is known to have population‐level effects; thus, an understanding of the patterns of mortality has the potential to yield important insights into population bottlenecks. Despite important advancements in tracking techniques, the specifics of mortality events in anadromous salmonids during their initial migration to sea remain somewhat elusive. Here, we develop a framework combining spatial and temporal detections of smolt riverine migration from two tracking techniques, which enable inferences to be made about mortality locations, causes, and rates. In this study, we demonstrate that during their initial riverine transitional phase, smolts were particularly vulnerable to predators. Specifically, avian predation appeared to be the main cause of mortality (42%), although piscine predation events were not trivial (14%). Our results suggested some direct and indirect tagging‐induced mortality (e.g., through increased predation vulnerability), which highlights the importance of determining tagging mortality in a telemetry study to ensure adequate interpretation of migration success. Overall, by estimating migration loss and its variability, our study framework should help to guide management actions to mitigate the widespread population declines these species are currently facing.

Understanding risks and consequences of pathogen infections on the physiological performance of outmigrating Chinook salmon.

The greatest concentration of at-risk anadromous salmonids is found in California (USA)—the populations that have been negatively impacted by the degradation of freshwater ecosystems. While climate-driven environmental changes threaten salmonids directly, they also change the life cycle dynamics and geographic distribution of pathogens, their resulting host-pathogen interactions and potential for disease progression. Recent studies have established the correlation between pathogen detection and salmonid smolt mortality during their migration to the ocean. The objective of the present study was to screen for up to 47 pathogens in juvenile Chinook salmon (Oncorhynchus tshawytscha) that were held in cages at two key sites of the Sacramento River (CA, USA) and measure potential consequences on fish health. To do so, we used a combination of transcriptomic analysis, enzymatic assays for energy metabolism and hypoxia and thermal tolerance measures. Results revealed that fish were infected by two myxozoan parasites: Ceratonova shasta and Parvicapsula minibicornis within a 2-week deployment. Compared to the control fish maintained in our rearing facility, infected fish displayed reduced body mass, depleted hepatic glycogen stores and differential regulation of genes involved in the immune and general stress responses. This suggests that infected fish would have lower chances of migration success. In contrast, hypoxia and upper thermal tolerances were not affected by infection, suggesting that infection did not impair their capacity to cope with acute abiotic stressors tested in this study. An evaluation of long-term consequences of the observed reduced body mass and hepatic glycogen depletion is needed to establish a causal relationship between salmon parasitic infection and their migration success. This study highlights that to assess the potential sublethal effects of a stressor, or to determine a suitable management action for fish, studies need to consider a combination of endpoints from the molecular to the organismal level.

Salmonid Smolt Caudal Fin and Liver Transcriptome Responses to Low Sulfur Marine Diesel and High Sulfur Fuel Oil Seawater Accommodated Fractions for Assessing and Tracking Oil Spill Effects in Marine Environments

Salmonid Smolt Caudal Fin and Liver Transcriptome Responses to Low Sulfur Marine Diesel and High Sulfur Fuel Oil Seawater Accommodated Fractions for Assessing and Tracking Oil Spill Effects in Marine Environments

Guiding migrating salmonid smolts: Experimentally assessing the performance of angled and inclined screens with varying gap widths

The loss of longitudinal connectivity in regulated rivers, both up- and downstream, has been detrimental for biodiversity worldwide. While progress has been made regarding upstream fish passage solutions, many questions remain unanswered regarding downstream passage alternatives. To address these knowledge gaps, we used Atlantic salmon (S. salar) smolts to experimentally assess the guidance efficiency and passage rates produced by several common screen-and-bypass fish guidance systems. Vertical screens with horizontally oriented bars extending across a turbine intake channel at a shallow angle (angled guidance screens), combined with a single, full-depth bypass entrance at their downstream end, were on average 20% more effective and produced passage rates that were 10 times higher than screens which extended perpendicularly across a turbine intake channel with vertically oriented bars that rose gradually towards the surface (inclined guidance screens) and with a bypass at the surface, on either side of the screen. Among inclined screens, gap width was negatively associated with guidance efficiencies and the smallest gap width (15 mm) exhibited a 41% greater guidance efficiency than the largest (30 mm). Among angled screens, performance was more closely linked to construction material as metal racks produced passage rates over three times faster than flexible Kevlar netting. Overall, passage through the guidance screens, and therefore into a tentative turbine intake area, was positively associated with gap width and was twice as prevalent among the inclined relative to angled guidance screens. Ultimately, an angled guidance screen with a 30 mm gap width produced the highest guidance efficiency and passage rates (a 30% improvement over the next best screen), while an inclined screen with a 30 mm gap width produced the lowest guidance efficiencies and passage rates. These results have implications for the suitability and performance of downstream fish passage solutions at both large- and small-scale hydropower plants where passage solutions are currently lacking or inadequate.

Surface water with more natural temperatures promotes physiological and endocrine changes in landlocked Atlantic salmon smolts

Hatchery salmonid smolts are often reared using groundwater with elevated temperatures to maximize growth. Previous work has shown that rearing hatchery smolts in surface water with a more natural thermal regime resulted in increased return rates of adult landlocked Atlantic salmon (Salmo salar). We evaluated whether landlocked Atlantic salmon reared in surface water with a natural temperature regime have altered physiological smolt characteristics compared with fish reared in groundwater with elevated winter temperatures. Hatchery fish were sampled three consecutive years from January to May. Additional fish were released as smolts, recaptured, and compared with fry-stocked smolts. Surface water smolts had earlier peaks of plasma T4, lower T3 levels, later peak cortisol, and lower gill Na+/K+-ATPase activity as compared with groundwater smolts. After release and recapture, surface water fish had elevated plasma T4 and gill Na+/K+-ATPase activity compared with groundwater fish, but less than stream-reared fish. Elevated plasma T4 in surface water fish in the hatchery and after release may have promoted imprinting and other aspects of smolt development, contributing to the higher adult return rates of a cohort reared in surface water.

Passage and Survival of Juvenile Salmonid Smolts through Dams in the Columbia and Snake Rivers, 2010–2018

AbstractMinimizing the mortality and migration time of juvenile salmon (smolts) that pass through dams is a long‐standing objective in the pursuit of salmon recovery in the Columbia River basin. We compiled and analyzed 40 acoustic tag studies of juvenile salmonid that were performed between 2010 and 2018 at seven of the eight hydroelectric projects in the Federal Columbia River Power System. We found that the use of nonturbine routes decreased monotonically moving downstream from the Snake River to the main‐stem Columbia River dams and associated mortality differed substantially between the dams in the two rivers. Spillways were the predominant passage route at the main‐stem Columbia River dams. In contrast, passage was more common through the surface weirs and juvenile bypass systems at the dams in the Snake River, which generally provided higher survival. The observed stocks exhibited variable passage behaviors and mortalities, and the estimated probability that an individual would pass through all eight dams in the system without using a turbine route was 0.31, 0.47, and 0.60 for subyearling Chinook Salmon Oncorhynchus tshawytscha, yearling Chinook Salmon, and steelhead O. mykiss, respectively. Although subyearling Chinook Salmon were generally more likely to pass through a turbine route, they also experienced less turbine‐associated mortality than did the other stocks, especially steelhead. Notably, the proportion of smolts that passed through the spillway relative to the proportion of water through the spillway was lowest at Bonneville Dam, the largest and lowermost dam in the system. Bonneville Dam also stood out as having the highest proportion of smolts passing through turbines, but it was among the locations with the lowest rates of turbine‐associated mortality.

Population Dynamics and Temporal Trends of Bull Trout in the East Fork Salmon River, Idaho

AbstractBecause of their long‐term listing under the Endangered Species Act, much interest has been placed on estimating population vital rates for Bull Trout Salvelinus confluentus, but the biotic and abiotic factors that influence the interannual variability in those vital rates have rarely been evaluated. We used mark–recapture data to estimate fish growth, survival, and trends in abundance for fluvial adult Bull Trout in the East Fork Salmon River, Idaho. Over an 8‐year period, a total of 1,205 individual Bull Trout were collected at a weir on the East Fork Salmon River (29 km upstream of its confluence with the Salmon River) during June–September, of which 420 were recaptures from prior years. Bull Trout varied in length from 215 to 756 mm and achieved a slightly larger asymptotic length and a slightly lower rate of growth relative to other fluvial and adfluvial Bull Trout populations. Apparent survival averaged 0.42 across all years, which was similar to previous studies estimating apparent survival for Bull Trout. The number of emigrating anadromous salmonid smolts in the upper Salmon River basin positively influenced East Fork Salmon River Bull Trout growth and survival, and survival was higher in years with lower annual discharge. Assessment of population growth via linear regression analysis indicated that the Bull Trout population was increasing during the study period (λ = 1.08; 95% confidence interval = 1.03–1.14). Our findings highlight the ecological link between the abundance of wild and hatchery Chinook Salmon Oncorhynchus tshawytscha, Sockeye Salmon O. nerka, and steelhead O. mykiss smolts and growth and survival of adult Bull Trout in systems where these species occur in sympatry.

Validation of Francis–Kaplan Turbine Blade Strike Models for Adult and Juvenile Atlantic Salmon (Salmo Salar, L.) and Anadromous Brown Trout (Salmo Trutta, L.) Passing High Head Turbines

The negative effects of hydroelectric power (HEP) on salmonid populations has long been recognized and studied. Downstream passage through turbines may potentially constitute a significant source of mortality for both juvenile and adult fish in regulated rivers. Numerical models have been developed to calculate turbine passage mortality based on the probability of collision with the turbine blades, but although widely used in management and conservation, their performance is rarely validated in terms of the accuracy and bias of the mortality estimates. In this study, we evaluated commonly used blade strike models for Kaplan and Francis turbines by comparing model predictions with observed passage mortalities for juvenile 13–27 cm and adult 52–94 cm Atlantic salmon (Salmo salar, L.) and anadromous brown trout (Salmo trutta, L.) acquired by acoustic telemetry. Predictions made for juveniles aligned closer with observed mortality for both Kaplan and Francis turbines (within 1–3% percentage points). However, the model severely underestimated the mortality of adult fish passing through Francis turbines, with up to 50% percentage points difference between predicted and observed mortalities. Furthermore, the model did not capture a clear negative correlation between mortality and discharge observed for salmon between 50–60 cm (grilse). We concluded that blade strike models are a useful tool for quantifying passage mortality for salmonid smolts passing large, high-head turbines, but that the same models should be used with care when trying to estimate the passage mortality of kelts in iteroparous populations. We also concluded that the major cause of passage mortality for juveniles is injury by collision with the turbine blade, but that other factors seem to contribute substantially to the passage mortality of kelts. Our study reports low mortality for smolts up to 27 cm passing through Kaplan and Francis turbines (0–12%), but high mortality for salmon over 50 cm passing though Francis turbines (56–81%).

Disruptive effects of nonylphenol on reproductive hormones, antioxidant enzymes, and histology of liver, kidney and gonads in Caspian trout smolts

The endocrine-disrupting effect of pollutants such as alkylphenols has been considered a major concern during recent years. Although the effects of nonylphenol on the reproductive hormones of fish have been investigated in several studies, the effect of this endocrine disruptor on reproductive hormones of immature fish and salmonid smolts has been less addressed. The present work studied the effects of 1, 10 and 100 μg/l concentrations of nonylphenol on the levels of plasma reproductive hormones and liver antioxidant enzymes as well as on histopathology of reproductive and non-reproductive organs of male and female Caspian brown trout (Salmo trutta caspius) smolts after 21 days of exposure. The results of the present study showed that environmentally relevant concentrations of nonylphenol affected plasma levels of sex steroids; gonadotropins, phosphorus, estradiol to testosterone ratio, and also caused histopathological lesions in liver, kidney and testis tissues of immature Caspian brown trout during smolting. Nonylphenol significantly increased the levels of estradiol in plasma of both male and female smolts exposed to nonylphenol compared with the control groups. Exposure to nonylphenol decreased testosterone and FSH levels in both genders. It has also increased plasma levels of LH in females but did not affect LH levels in male fish. Liver SOD and CAT content was decreased in nonylphenol-exposed smolts. Therefore, the release of this economically valuable and endangered species into the rivers contaminated with nonylphenol should be avoided as it can have significant effects on the development and reproductive function of smolts.

Transcriptome profiles relate to migration fate in hatchery steelhead (Oncorhynchus mykiss) smolts

For anadromous Pacific salmonid (Oncorhynchus spp.) smolts, the physiological state of individuals can influence migration fate. This critical life stage is typically associated with poor survival and influences population productivity, highlighting the need to identify intrinsic factors associated with outmigration fate. To better understand and identify such factors, we combined acoustic telemetry with nonlethal gill biopsies and used high-throughput real-time quantitative polymerase chain reaction to assess how infectious agents and host gene expression profiles influence migration fate for hatchery steelhead smolts (Oncorhynchus mykiss). Redundancy analyses of gene expression, infectious agent loads, and body condition highlighted gene expression profiles indicative of migratory fate. Smolts never detected after release in the river had significantly elevated expression of the immune genes Il-17D and RPL6, and lower expression of the osmoregulatory gene NKA α1b relative to other individuals. Flavobacterium psychrophilum and “Candidatus Branchiomonas cysticola” were detected in gill samples, but neither influenced survival. We demonstrate rare evidence of gene expression profiles relating to migration fate in juvenile salmonids and highlight potential mechanisms influencing fate for hatchery steelhead smolts.

Contrasting genetic metrics and patterns among naturalized rainbow trout (Oncorhynchus mykiss) in two Patagonian lakes differentially impacted by trout aquaculture.

Different pathways of propagation and dispersal of non‐native species into new environments may have contrasting demographic and genetic impacts on established populations. Repeated introductions of rainbow trout (Oncorhynchus mykiss) to Chile in South America, initially through stocking and later through aquaculture escapes, provide a unique setting to contrast these two pathways. Using a panel of single nucleotide polymorphisms, we found contrasting genetic metrics and patterns among naturalized trout in Lake Llanquihue, Chile's largest producer of salmonid smolts for nearly 50 years, and Lake Todos Los Santos (TLS), a reference lake where aquaculture has been prohibited by law. Trout from Lake Llanquihue showed higher genetic diversity, weaker genetic structure, and larger estimates for the effective number of breeders (N b) than trout from Lake TLS. Trout from Lake TLS were divergent from Lake Llanquihue and showed marked genetic structure and a significant isolation‐by‐distance pattern consistent with secondary contact between documented and undocumented stocking events in opposite shores of the lake. Multiple factors, including differences in propagule pressure, origin of donor populations, lake geomorphology, habitat quality or quantity, and life history, may help explain contrasting genetic metrics and patterns for trout between lakes. We contend that high propagule pressure from aquaculture may not only increase genetic diversity and N b via demographic effects and admixture, but also may impact the evolution of genetic structure and increase gene flow, consistent with findings from artificially propagated salmonid populations in their native and naturalized ranges.

Chinook salmon and green sturgeon migrate through San Francisco Estuary despite large distortions in the local magnetic field produced by bridges.

Empirical evidence exists that some marine animals perceive and orient to local distortions in the earth’s main static geomagnetic field. The magnetic fields produced by undersea electric power cables that carry electricity from hydrokinetic energy sources to shore-based power stations may produce similar local distortions in the earth’s main field. Concerns exist that animals migrating along the continental shelves might orient to the magnetic field from the cables, and move either inshore or offshore away from their normal path. We have studied the effect of the Trans Bay Cable (TBC), an 85-km long, high voltage, direct current (DC) transmission line leading underwater from Pittsburg, CA to San Francisco, CA, on fishes migrating through the San Francisco Estuary. These included Chinook salmon smolts (Oncorhynchus tshawytscha) that migrate downstream through the San Francisco Estuary to the Pacific Ocean and adult green sturgeon (Acipenser medirostris), which migrate upstream from the ocean through the estuary to their spawning habitat in the upper Sacramento River and return to the ocean after spawning occurs. Based on a detailed gradiometer survey, we found that the distortions in the earth’s main field produced by bridges across the estuary were much greater than those from the Trans Bay Cable. The former anomalies exceeded the latter by an order of magnitude or more. Significant numbers of tagged Chinook salmon smolts migrated past bridges, which produced strong magnetic anomalies, to the Golden Gate Bridge, where they were recorded by dual arrays of acoustic tag-detecting monitors moored in lines across the mouth of the bay. In addition, adult green sturgeon successfully swam upstream and downstream through the estuary on the way to and from their spawning grounds. Hence, the large anomalies produced by the bridges do not appear to present a strong barrier to the natural seasonal movement patterns of salmonid smolts and adult green sturgeon.

Trophic Feasibility of Reintroducing Anadromous Salmonids in Three Reservoirs on the North Fork Lewis River, Washington: Prey Supply and Consumption Demand of Resident Fishes

AbstractThe reintroduction of anadromous salmonids in reservoirs is being proposed with increasing frequency, requiring baseline studies to evaluate feasibility and estimate the capacity of reservoir food webs to support reintroduced populations. Using three reservoirs on the north fork Lewis River as a case study, we demonstrate a method to determine juvenile salmonid smolt rearing capacities for lakes and reservoirs. To determine if the Lewis River reservoirs can support reintroduced populations of juvenile stream‐type Chinook Salmon Oncorhynchus tshawytscha, we evaluated the monthly production of daphnia Daphnia spp. (the primary zooplankton consumed by resident salmonids in the system) and used bioenergetics to model the consumption demand of resident fishes in each reservoir. To estimate the surplus of Daphnia prey available for reintroduced salmonids, we assumed a maximum sustainable exploitation rate and accounted for the consumption demand of resident fishes. The number of smolts that could have been supported was estimated by dividing any surplus Daphnia production by the simulated consumption demand of an individual Chinook Salmon fry rearing in the reservoir to successful smolt size. In all three reservoirs, densities of Daphnia were highest in the epilimnion, but warm epilimnetic temperatures and the vertical distribution of planktivores suggested that access to abundant epilimnetic prey was limited. By comparing accessible prey supply and demand on a monthly basis, we were able to identify potential prey supply bottlenecks that could limit smolt production and growth. These results demonstrate that a bioenergetics approach can be a valuable method of examining constraints on lake and reservoir rearing capacity, such as thermal structure and temporal food supply. This method enables numerical estimation of rearing capacity, which is a useful metric for managers evaluating the feasibility of reintroducing Pacific salmon Oncorhynchus spp. in lentic systems.Received April 24, 2016; accepted July 28, 2016 Published online October 11, 2016

Identification and expressional analysis of NLRC5 inflammasome gene in smolting Atlantic salmon (Salmo salar)

The NOD-like receptors (NLRs) were recently identified as an intracellular pathogen recognition receptor family in vertebrates. While the immune system participation of NLRs has been characterized and analyzed in various mammalian models, few studies have considered NLRs in teleost species. Therefore, this study analyzed the Atlantic salmon (Salmo salar) NLRC5. Structurally, Atlantic salmon NLRC5 presented leucine-rich repeat subfamily genes. Phylogenetically, NLRC5 was moderately conserved between S. salar and other species. Real-time quantitative PCR revealed NLRC5 expression in almost all analyzed organs, with greatest expressions in the head kidney, spleen, and hindgut. Furthermore, NLRC5 gene expression decreased during smolt stage. These data suggest that NLRC5 participates in the Atlantic salmon immune response and is regulated, at least partly, by the smoltification process, suggesting that there is a depression of immune system from parr at smolt stage. This is the first report on the NLRC5 gene in salmonid smolts.

The influence of sluice gate operation on the migratory behaviour of Atlantic salmon Salmo salar (L.) smolts

ABSTRACTNumerous studies have examined the effects of high-head dams on salmonid smolt migration, but few have examined smolt behaviour at sluices managed to regulate water levels. We quantified passage success and time to passage of wild and hatchery origin juvenile (smolt) Atlantic salmon (Salmo salar L.) migration in relation to sluice operation (for water level and flood risk management) at Bala sluices on the upper River Dee, North Wales, including the occurrence of flow-reversal conditions from the Dee to Llyn Tegid (Lake Bala) immediately upstream. Ninety four smolts (67 wild, 27 hatchery origin) were caught, acoustic tagged, released at the capture site and tracked with a fixed receiver array in April to May 2015. Of the tagged fish, 91.5% successfully reached and passed the sluice gates. Of the tracked smolts that reached the sluices, 6.6% failed to successfully migrate downstream through the sluices and 3.2% took over 4 days to pass. There was no significant difference in travel speed, nor the proportion successfully passing, between wild and hatchery reared fish. Smolts migrated quicker at higher flows. Smolts travelled at lower speeds through the sluices than the preceding section from which they originated, suggesting that migration may have been delayed by the sluice gates. Smolts passed through the sluice reach more quickly with higher discharge. Specifically, smolts moved quicker through the sluice reach when the aperture of the gate nearest the outside bend and thalweg increased, but the heights of the other gates did not significantly affect smolt speed past the structure. Flow reversal episodes occurred only by day, whereas more smolt activity occurred by night (66.5% between dusk and dawn); under these conditions we found little evidence for loss of fish to the lake (three fish [3.2%] visited the lake and did not pass the sluices, but were last detected above the sluices), or contribution to delayed passage, as a result of flow reversal. It is concluded that at sites operating undershot sluices, where smolts migrate, upper water column orientated migration routes should be maximized where the thalweg hits the structure as this is likely to be the main route of transit adopted by smolts.

Status after 5 Years of Survival Compliance Testing in the Federal Columbia River Power System (FCRPS)

AbstractSurvival studies of juvenile Pacific salmon Oncorhynchus spp. implanted with acoustic tags have been conducted at hydroelectric dams within the Federal Columbia River Power System in the Columbia and Snake rivers between 2010 and 2014 to assess compliance with the dam passage survival standards stipulated in the 2008 Biological Opinion. For juvenile yearling Chinook Salmon O. tshawytscha and steelhead O. mykiss that migrate downstream in the spring, dam passage survival (defined as survival from the upstream dam face to the tailrace mixing zone) must be ≥ 96%, and for subyearling Chinook Salmon that migrate downstream in summer, dam passage survival must be ≥ 93%. Precision requirement stipulates a standard error ≤ 1.5% (i.e., a 95% confidence interval of ± 3%). A total of 29 compliance tests have been conducted at six of eight main‐stem dams in the Federal Columbia River Power System, using over 109,000 acoustic‐tagged salmonid smolts. Of these 29 compliance studies, 23 met the survival standards and 26 met the precision requirements. Of the six dams evaluated to date, individual survival estimates range from 0.9597 to 0.9868 for yearling Chinook Salmon, from 0.9534 to 0.9952 for steelhead, and from 0.9076 to 0.9789 for subyearling Chinook Salmon. Averages across the six dams exceed the survival standards for all three migrant populations.Received November 9, 2015; accepted February 16, 2016 Published online June 27, 2016