Salmonid Farming Research Articles

Salmon lice (Lepeophtheirus salmonis) in the stomach contents of lumpfish (Cyclopterus lumpus) sampled from Norwegian fish farms: Relationship between lice grazing and operational conditions

Cleaner fish are commonly used as a control measure against salmon lice infestations in salmonid farms. Lumpfish (Cyclopterus lumpus) is the most common cleaner fish species used in Norwegian farms. However, little is known about how different operational, including environmental, conditions affect the salmon lice grazing efficacy by lumpfish. In this paper, we analyse salmon lice (Lepeophtheirus salmonis) in the stomach contents of a large sample of more than 20,000 lumpfish from 80 different Norwegian farms. We investigate the proportion of lumpfish with salmon lice and the mean number of salmon lice in the stomach contents of the lumpfish. We further explore how the salmon lice contents vary with different factors like lumpfish weight, weight of salmonids, salmon lice abundance in the cage, cloud cover, and sea temperature. We find that 3.1% of the 24,693 lumpfish contained salmon lice. Most of the lumpfish with salmon lice in their stomach contents contained few (one or two) lice, while there were a few lumpfish which contained many salmon lice. We find more salmon lice in the stomach contents with increasing abundance of salmon lice in the sea cage, lower weight of the salmonids, and in clear weather. Interestingly, for the relationship between lumpfish weight and salmon lice in the stomach contents, we find increased salmon lice grazing from ca. 5 g up to an optimal weight of ca. 40 g, and then a decrease from 40 g. Surprisingly, we find no relationship between sea temperature and salmon lice per lumpfish. We find more salmon lice in the stomach contents of the lumpfish with comparatively high condition. By studying the factors associated with most efficient salmon lice grazing, our paper contributes to understanding how different operational factors affect salmon lice grazing by lumpfish. For controllable factors, the results thus contribute to guiding the best practice for use of lumpfish as a salmon lice control measure.

Phylogenetic analysis and genotyping of Iranian infectious haematopoietic necrosis virus (IHNV) of rainbow trout (Oncorhynchus mykiss) based on the glycoprotein gene.

Infectious haematopoietic necrosis (IHN) is known as one of the most contagious systemic viral diseases in salmonids which can lead to significant mortality rates and negative impacts on the salmonid farming industry. Infectious haematopoietic necrosis virus (IHNV) was first detected in rainbow trout (Oncorhynchus mykiss) farms in Iran in 2003. We conducted the present study to determine the detection of IHN genotypes in rainbow trout (O. mykiss) in farms in the central parts of Iran, using molecular and phylogenetic techniques. Samples were collected from fries exhibiting clinical signs such as darkening of the skin, abdominal swelling, and loss of appetite. Phylogenetic analysis was performed by the neighbour-joining method, using MEGA 5.1 software. For phylogenetic analysis and genotyping of IHNV from central parts of Iran, the sequences of the glycoprotein gene were determined for two Iranian isolates (Jahad-UT1 and Jahad-UT2). Phylogenetic analysis revealed that the detected strains (Jahad-UT1 and Jahad-UT2 isolates) are closely related (97.23%-100%) to European isolates within genogroup 'E'. This finding indicates that Jahad-UT1 and Jahad-UT2 isolates have been widely transferred to Iran from European countries. Moreover, the nucleotide diversity of these Iranian isolates showed a close relationship with the North American and Asian isolates, although the Iranian isolates were collected from a smaller geographical area and within a shorter time period between 2014 and 2015.

Impact of abiotic factors and husbandry on saprolegniosis in salmonid farms

Oomycetes of the genus Saprolegnia are widespread in freshwater environment and are among the main pathogens causing economic losses in salmonid aquaculture.Infections by mycotic agents in fish farming are generally considered to result from chronic stress and poor fish condition associated with water quality problems, adverse environmental conditions, frequent/rough/incorrect handling, concurrent infections, physiological changes associated with reproduction and immunocompromised animals.To identify risk factors for Saprolegnia infections in trout and Atlantic salmon farming, longitudinal studies were carried out in different Italian, Spanish, and Scottish fish farms. Prevalence of saprolegniosis and fish mortality were monitored over time and statistically analysed with respect to husbandry and environmental factors.Overall, statistical results by production cycle (trout vs salmon farming) and by country indicate that the prevalence of Saprolegnia may be influenced by peculiarities of the culture system and farming environment. Nevertheless, a specific set of parameters, including lower water temperature, and handling procedures increased Saprolegnia prevalence in all the considered farms. Particularly, in trout farms Saprolegnia infections represented an important contribution to mortality, and prevalence was influenced by water temperature and pH, and by fish density within the tanks. Similarly, temperature and water quality were the main factors influencing the prevalence of Saprolegnia in Atlantic salmon farms. Moreover, molecular analyses confirmed the role of S. parasitica as the main pathogenic oomycete in trout and salmon farming in the considered countries. The identification of risk factors for introduction and increase of Saprolegnia infection in fish farms will allow the correct design of biosecurity and pathogen control strategies.

A cohort study of gill infections, gill pathology and gill-related mortality in sea-farmed Atlantic salmon (Salmo salar L.): Adescriptive analysis.

Gill disease is an important cause of economic losses, fish mortality and reduced animal welfare in salmonid farming. We performed a prospective cohort study, following groups of Atlantic salmon in Western Norway with repeated sampling and data collection from the hatchery phase and throughout the 1st year at sea. The objective was to determine if variation in pathogen prevalence and load, and zoo‐ and phytoplankton levels had an impact on gill health. Further to describe the temporal development of pathogen prevalence and load, and gill pathology, and how these relate to each other. Neoparamoeba perurans appeared to be the most important cause of gill pathology. No consistent covariation and no or weak associations between the extent of gill pathology and prevalence and load of SGPV, Ca. B. cysticola and D. lepeophtherii were observed. At sea, D. lepeophtherii and Ca. B. cysticola persistently infected all fish groups. Fish groups negative for SGPV at sea transfer were infected at sea and fish groups tested negative before again testing positive. This is suggestive of horizontal transmission of infection at sea and may indicate that previous SGPV infection does not protect against reinfection. Coinfections with three or more putative gill pathogens were found in all fish groups and appear to be the norm in sea‐farmed Atlantic salmon in Western Norway.

Immunological Effects of Recombinant Lactobacillus casei Expressing IHNV G Protein and Rainbow Trout (Oncorhynchus mykiss) Chemokine CK6 as an Oral Vaccine.

IHNV is a virus that infects salmonids and causes serious economic damage to the salmonid farming industry. There is no specific treatment for the disease caused by this pathogen and the main preventive measure is vaccination, but this is only possible for small groups of individuals. Therefore, it is important to investigate new oral vaccines to prevent IHNV. In this study, the CK6 chemokine protein of rainbow trout and the truncated G protein of IHNV were used to construct a secretory expression recombinant L.casei vaccine for rainbow trout. The results showed that the levels of IgM and IgT antibodies in rainbow trout reached the highest level on the 15th day after the secondary immunization, and the antibodies exhibited high inhibitory activity against viral infection. Furthermore, the expression of relevant cytokines in different tissues was detected and found to be significantly higher in the oral vaccine group than in the control group. It was also found that pPG-612-CK6-G/L.casei 393 could stimulate splenic lymphocyte proliferation and improve mucosal immunity with significant differences between the immunized and control groups. When infected with IHNV, the protection rate of pPG-612-CK6-G/L.casei 393 was 66.67% higher than that of the control group. We found that pPG-612-CK6-G/L.casei 393 expressed and secreted the rainbow trout chemokine CK6 protein and IHNV truncated G protein, retaining the original immunogenicity of rainbow trout while enhancing their survival rate. This indicates that recombinant L.casei provides a theoretical basis and rationale for the development of an oral vaccine against IHNV and has important practical implications for the protection of rainbow trout from IHNV infection.

Effect of sea lice chemotherapeutant hydrogen peroxide on the photosynthetic characteristics and bleaching of the coralline alga Lithothamnion soriferum.

The proliferation of sea lice (Lepeophtheirus salmonis) represents a major challenge for the salmonid aquaculture industry in Norway. Hydrogen peroxide (H2O2) is a chemotherapeutant frequently used on Norwegian farms, however, its toxicity to non-target benthic species and habitats remains poorly understood. Maerl beds are constructed by the accumulation of non-geniculate coralline algae and provide important ecological functions. Due to the rapid expansion of aquaculture in Norway and the continued use of H2O2 as an anti-sea lice treatment, it is crucial to understand the impact of H2O2 on the physiology of maerl-forming species. The effects of a 1h exposure to H2O2 on the photophysiology and bleaching of the coralline alga Lithothamnion soriferum were examined here through a controlled time-course experiment. PAM fluorimetry measurements showed that H2O2 concentrations≥200mg l-1 negatively affected photosystem II (PSII) in thalli immediately after exposure, which was observed through a significant decline in maximum photochemical efficiency (Fv/Fm) and relative electron transport rate (rETR). The negative effects on PSII induced by oxidative stress, however, appear to be reversible, and full recovery of photosynthetic characteristics was observed 48h to 28 days after exposure to 200mg H2O2 l-1 and 2000mg H2O2 l-1, respectively. At 28 days after exposure, there was evidence of two- to four-times more bleaching in thalli treated with concentrations ≥ 200mg H2O2 l-1 compared to those in the control. This indicates that despite the recovery of PSII, persistent damages can occur on the structural integrity of thalli, which may considerably increase the vulnerability of coralline algae to further exposure to H2O2 and other chemical effluents from salmonid farms.

Use of antimicrobials in Chilean Salmon farming: Facts, myths and perspectives

AbstractChile is the second largest producer of salmon (only behind Norway), and high amounts of antimicrobials are used during the marine stage, mainly florfenicol. Intensive antimicrobials use is a relevant concern, prompting the urgent need for use reduction and advancements towards more restricted, efficient application. This review describes the historic and current use of antimicrobials in Chilean salmonid farming. Further covered is the experimental evidence reported to date, thus providing a clearer understanding for the pathogenic nature of Piscirickettsia salmonis—the most important bacterial pathogen and the main target of antimicrobials used in the Chilean industry. This review also assesses research exploring the impacts of antimicrobial treatment on the environment, as well as investigations on the antibiotic susceptibility of salmonid pathogens. This review of the scientific literature contributes to a more unbiased appraisal of the current situation in Chile. Unfortunately, various previous reports dealing with/on the antimicrobial use in the Chilean salmon farming industry have been arrived to insufficiently supported conclusions, thus the present review aims to clarify outdated or poorly substantiated information and assumptions in existing literature. The consequences of antimicrobials in fish farming are covered by this review, which is particularly relevant considering potential impacts on aquatic environments. Focus is given to the selection and spread of drug‐resistant bacteria and associated resistance‐encoding genes. Finally, herein are provided several recommendations from a One Health perspective for decreasing amounts of used antimicrobials, effectively controlling primary bacterial fish pathogens, developing proper prevention strategies and reducing the dissemination of antimicrobial resistance.

Research Before Policy: Identifying Gaps in Salmonid Welfare Research That Require Further Study to Inform Evidence-Based Aquaculture Guidelines in Canada.

Aquaculture is a growing industry worldwide and Canadian finfish culture is dominated by marine salmonid farming. In part due to increasing public and stakeholder concerns around fish welfare protection, the first-ever Canadian Code of Practice for the Care and Handling of Farmed Salmonids was recently completed, following the National Farm Animal Care Council's (NFACC) rigorous Code development process. During this process, both the Scientific (responsible for reviewing existing literature and producing a peer-reviewed report that informs the Code) and Code Development (a diverse group of stakeholders including aquaculture producers, fish transporters, aquaculture veterinarians, animal welfare advocates, food retailers, government, and researchers) Committees identified research gaps in tandem, as they worked through the literature on salmonid physiology, health, husbandry, and welfare. When those lists are combined with the results of a public “top-of-mind” survey conducted by NFACC, they reveal several overlapping areas of scientific, stakeholder, and public concern where scientific evidence is currently lacking: (1) biodensity; (2) health monitoring and management, with a focus on sea lice infection prevention and management; (3) feed quality and management, particularly whether feed restriction or deprivation has consequences for welfare; (4) enclosure design, especially focused on environmental enrichment provision and lighting design; and (5) slaughter and euthanasia. For each of these five research areas, we provide a brief overview of current research on the topic and outline the specific research gaps present. The final section of this review identifies future research avenues that will help address these research gaps, including using existing paradigms developed by terrestrial animal welfare researchers, developing novel methods for assessing fish welfare, and the validation of new salmonid welfare indices. We conclude that there is no dearth of relevant research to be done in the realm of farmed salmonid welfare that can support crucial evidence-based fish welfare policy development.

Mussel farming production capacity and food web interactions in a mesotrophic environment

Low trophic aquaculture (LTA), such as bivalve farming, offers promising avenues to supply sustainable seafood and aquafeed. While bivalve farming usually occurs in highly productive coastal areas which already support numerous human activities and suffer from environmental pressures, numerical tools offer a promising avenue to explore and assess biomass production potential and associated ecosystemic impacts for further development of the industry and prospection of new exploitation sites. In this study, we coupled an ecophysiological model, the dynamic energy budget theory (DEB), with an ecosystem model (NORWECOM.E2E) to simulate blue mussel Mytilus spp. farming production and effects based on the food web in the mesotrophic Hardangerfjord in western Norway. We tested several levels of fjord-scale farming intensity and assessed 2 production purposes: aquafeed and human consumption. Results suggested the Hardangerfjord could host large-scale mussel farming for both purposes. However, large exploitation schemes displayed detrimental effects on individual mussel growth (39% less wet mass after 2 yr) and especially on secondary production (decrease of 33% after 1 yr) due to acute trophic competition. Simulations showed short production cycles for aquafeed were more efficient to exploit primary production, since young and small mussels have lower maintenance and reproduction costs. Dissolved nutrient inputs from salmonid farms had marginal effects on primary production (<2%). However, salmonid and mussel farming activities could compete for the sites with the highest production potential.

Modelling salmon lice-induced mortality of wild salmon post-smolts is highly sensitive to calibration data

Salmon lice from fish farms in open net pens pose a threat to the survival of wild salmon post-smolts migrating through areas with high farm and lice densities. Reliable estimation of this mortality is fundamental for the sustainable management of aquaculture in such areas but is challenged by considerable uncertainty about several of the processes that link reported lice numbers in fish farms to post-smolt mortality. Utilising recent access to lice data from post-smolt trawling, we revised a virtual post-smolt model that estimates salmon lice-induced mortality of seaward-migrating wild salmon post-smolts. We also assessed the sensitivity of model results to model assumptions that differ among the virtual post-smolt models currently being used as management support in Norway. The spatiotemporal variation in infestation pressure along the entire Norwegian coast was calculated based on monitoring data for salmon lice, temperature and fish abundance in all Norwegian salmonid farm locations. The revised model integrates lice data from sentinel cage experiments and post-smolt trawling to quantify the spatiotemporal variation in infestation rate of wild post-smolts from the spatiotemporal infestation pressure, while also estimating the effect of calibration data type on infestation rate. Results show 10 times higher infestation rate in trawl-caught post-smolts than in post-smolts from sentinel cage experiments. Mortality estimates calibrated to trawl data are more sensitive to assumptions about possible density dependence in lice infestation rate than to assumptions about migration speed. These findings contribute to explaining why different virtual post-smolt models provide different estimates of salmon lice-induced mortality.

Black soldier fly larval meal with exogenous protease in diets for rainbow trout (Oncorhynchus mykiss) production meeting consumer quality

A protein gap exists within the supply of fish feed ingredients due to intensifying global aquaculture production and demands. This is distinctly acute in salmonid farming where protein requirements are higher to other aquatic farmed species. In pursuit of a viable alternative, an eight-week feeding trial was conducted to evaluate the feasibility of including reared black soldier fly (BSF, Hermetia illucens ) larvae into rainbow trout ( Oncorhynchus mykiss ) diets. Five diets were formulated: a fish meal-based basal diet (CTRL), two diets of BSF incorporation at 15 and 30% (BSF15; BSF30), and two diets at the same incorporation level with the addition of a supplementary protease enzyme (BSF15P; BSF30P) assigned to test potential dietary enhancement. No significant growth performance between the dietary treatments was observed. The fish condition factor in BSF30 was higher than BSF30P ( P =0.025). Fillets showed increased muscle yellowness as dietary BSF increased ( P =0.004). Trout fed BSF displayed significantly lower lipid peroxidation post-harvest ( P < 0.001), with the level of malondialdehyde decreasing with increased dietary BSF, regardless of protease inclusion. BSF meal elevated the saturated fatty acid content of fillets significantly ( P < 0.001) while monounsaturated fatty acids decreased ( P < 0.001). BSF protease treatments elevated the total concentration of protein in the trout body content, reflecting potentially improved protein utilisation efficiency. BSF diet with protease inclusion is a feasible protein and energy concentrate to replace fish meal in rainbow trout diets up to 30%, without negative effects on the growth, proximate composition, fatty acid profile, lipid peroxidation and fillet colour stability of rainbow trout. • Inclusion of black solider fly larvae meal maintains trout growth performance. • Increase in fillet lauric fatty acid content was found in insect meal fed trout. • Use of protease elevated protein content in trout fed with black solider fly meal. • Black soldier fly meal decreased fillet lipid peroxidation. • An increase of fillet yellowness was found in solider fly meal fed trout.

Farm-Level Cost Drivers of Salmonid Fish Health Inspections.

Regulatory costs on aquaculture farms have been shown to be of a magnitude that warrants additional analysis. The drivers of farm-level costs of fish health inspections were identified in this study from national survey data on U.S. salmonid farms. The greatest costs identified were related primarily to state fish health requirements for inspection and testing to certify that fish are free of specific pathogens prior to approval of necessary permits to sell and/or transport animals. Fish health inspection costs included laboratory testing, farm personnel time, veterinary fees, and shipping samples to laboratories, with laboratory testing and the value of farm personnel time being the most expensive components. Principal cost drivers were the number of tests and whether required sampling was farmwide or for each lot as identified by the collector. Farmers who primarily sold into recreational markets had greater fish health costs than farmers who primarily sold food fish because of the greater numbers of species and size-/age-classes of salmonids on their farms. Regulatory requirements to test all species and size-/age-classes on farms increased inspection costs by increasing the total number of tests, the total value of fish sacrificed, and shipping costs. Consequently, for farms with more than one species or more than one size-/age-class, annual farm-level testing was less costly than annual lot-based testing. Increased numbers of tests in a given year, although reported by only a few respondents, can increase costs dramatically and turn profitable farms unprofitable, even food fish farms. Smaller salmonid farms experienced disproportionately greater inspection cost burdens than did larger farms. The fish health inspection scenario of only one annual inspection of only the most susceptible species and size-/age-class showed a cost burden that did not generate economic distress, even on smaller salmonid farms. Other scenarios modeled (based on survey data) that included lot-based surveys of multiple species and size-/age-classes resulted in substantially greater fish health inspection costs that led to unprofitability for various farm sizes and business types. Study results suggest that implementing Comprehensive Aquaculture Health Program Standards might allow for risk- and pathogen-based reductions in the total number of inspections and fish sampled while maintaining equivalent or greater health status compared to current methods. American Fisheries Society-Fish Health Section Blue Book inspection methods are interpreted and applied inconsistently across states and generally yield lot- rather than farm-level health attestations because the history of testing results, risk assessment, and biosecurity practices are not typically taken into account. The cost effects of alternative fish health sampling and testing requirements should be considered in decisions and policy on fish health regulation.

A baseline survey of antimicrobial use and health issues in the freshwater salmonid industry in France

International organizations encourage the monitoring of antimicrobial use and resistance in bacteria to manage and minimize further development of antimicrobial resistance. In France, the public policy plan Ecoantibio has underlined the need to collect data on antimicrobial use in all livestock production chains from direct, on-farm studies. To gain better knowledge on antimicrobial use in the aquaculture industry, we therefore conducted a cross-sectional study in 2014–2015 on a representative sample of 100 French freshwater salmonid farms. The health issues and medicinal products used during the reference year (full year preceding the visit, 2013 or 2014), were recorded by administering an on-farm questionnaire and by consulting documents, feed mills and prescribing veterinarians. Rainbow trout fry syndrome (RTFS), the most frequently reported disease, affected 41% of the fish farms at least once in the previous year. Parasitic diseases were also a cause of major concern, and finally furunculosis affecting 20% of the farms. Two-thirds (65%) of the farmers used antimicrobials at least once during this preceding year. Florfenicol was the most frequently used antimicrobial, mainly to treat outbreaks of RTFS, but it represented less than 20% of the treated fish biomass. Antimicrobials regarded as critical for public health reasons were used only exceptionally.

Farmed Salmon Show No Pathological Alterations When Exposed to Acoustic Treatment for Sea Lice Infestation

The use of bioacoustic methods to address sea lice infestation in salmonid farming is a promising innovative method but implies an exposure to sound that could affect the fish. An assessment of the effects of these techniques related to the salmon’s welfare is presented here. The fish were repeatedly exposed to 350 Hz and 500 Hz tones in three- to four-hour exposure sessions, reaching received sound pressure levels of 140 to 150 dB re 1 µPa2, with the goal of reaching total sound exposure levels above 190 dB re 1 µPa2 s. Gross pathology and histopathological analysis performed on exposed salmons’ organs did not reveal any lesions that could be associated to sound exposure. The analysis of their otoliths through electron microscopy imaging confirmed that the sound dose that was used to impair the lice had no effects on the fish auditory organs.

Realtime case study simulations of transmission of Pancreas Disease (PD) in Norwegian salmonid farming for disease control purposes

Pancreas Disease (PD) is a viral disease caused by Salmonid Alphavirus (SAV). It affects farmed salmonids in the North Atlantic, and leads to reduced feed intake and increased mortality with reduced production and welfare as a consequence. In 2013, the estimated cost of an outbreak on an average salmon farm was about 6.6 mil €. In Norway, PD has been notifiable since 2008, and regulations to mitigate disease spread are in place. However, despite the regulations, 140–170 farms are affected by PD every year. The aquaculture industry is growing continuously, introducing farms in new geographical areas, and fish are moved between hydrographically separated zones for trade and slaughter. All such movements and relocations need to be approved by the competent authorities. Thus, there is a demand for support to farmers and competent authorities when making decisions on disease management and especially on the effect of moving infected fish. We have used a disease-transmission model for outbreak-simulation in real time for assessing the probability of disease transmission from a farm that gets infected with PD. We have also simulated the effects of three different control-regimes: no stamping-out, delayed stamping-out or immediate stamping-out, on the transmission of PD to surrounding farms. Simulations showed that the immediate stamping out of an infected farm led to effective containment of an outbreak. No stamping out led to up to 32.1% of farms within 100 km of the index farm to become effected. We have used real production data for the model building and the scenario simulations, and the results illustrate that a risk assessment of horizontal disease transmission must be undertaken on a case-by-case basis, because the time and place of the outbreak has a large influence on the risk of transmission.

Genetic Characterization of the Tetracycline-Resistance Gene tet(X) Carried by Two Epilithonimonas Strains Isolated from Farmed Diseased Rainbow Trout, Oncorhynchus mykiss in Chile.

The main objective of this study was to characterize the tet(X) genes, which encode a monooxygenase that catalyzes the degradation of tetracycline antibiotics, carried by the resistant strains FP105 and FP233-J200, using whole-genome sequencing analysis. The isolates were recovered from fin lesion and kidney samples of diseased rainbow trout Oncorhynchus mykiss, during two Flavobacteriosis outbreaks occurring in freshwater farms located in Southern Chile. The strains were identified as Epilithonimonas spp. by using biochemical tests and by genome comparison analysis using the PATRIC bioinformatics platform and exhibited a minimum inhibitory concentration (MIC) of oxytetracycline of 128 µg/mL. The tet(X) genes were located on small contigs of the FP105 and FP233-J200 genomes. The sequences obtained for the tet(X) genes and their genetic environment were compared with the genomes available in the GenBank database of strains of the Chryseobacterium clade belonging to the Flavobacterium family, isolated from fish and carrying the tet(X) gene. The Tet(X) proteins synthesized by the Chilean Epilithonimonas strains showed a high amino acid similarity (range from 84% to 100%), with the available sequences found in strains belonging to the genus Chryseobacterium and Flavobacterium isolated from fish. An identical neighborhood of tet(X) genes from both Chilean strains was observed. The genetic environment of tet(X) observed in the two strains of Epilithonimonas studied was characterized by the upstream location of a sequence encoding a hypothetical protein and a downstream located alpha/beta hydrolase-encoding gene, similar to the observed in some of the tet(X) genes carried by Chryseobacterium and Flavobacterium strains isolated from fish, but the produced proteins exhibited a low amino acid identity (25–27%) when compared to these synthesized by the Chilean strains. This study reports for the first time the carriage of the tet(X) gene by the Epilithonimonas genus and their detection in fish pathogenic bacteria isolated from farmed salmonids in Chile, thus limiting the use of therapies based on oxytetracycline, the antimicrobial most widely used in Chilean freshwater salmonid farming. This results suggest that pathogenic strains of the Chryseobacterium clade occurring in Chilean salmonid farms may serve as important reservoirs of tet(X) genes.

Sensitivity assessment to azamethiphos by time-to-response bioassay and biomarkers in the sea louse Caligus rogercresseyi

Delousing drugs have been intensively applied to salmon farming as the main method to control lice infestations. Hence, early detection of changes in the susceptibility status is crucial to control and prevent the spread of drug resistance. This study aimed to assess the sensitivity to azamethiphos in the sea louse based on the time-to-response method coupled with gene biomarkers related to drug response (ET50-PCR). Four populations of the sea lice C. rogercresseyi with contrasting sensitivity to azamethiphos drug were used to validate this assay. For those populations, EC50 and ET50 indexes were tested. Additionally, the transcription expression of 20 candidate genes related to drug response were also evaluated. Lower ET50 indexes were observed for susceptible lice populations compared with resistant ones. Moreover, gene expression analysis evidenced three genes: cytochrome p450, long non-coding RNAs 8967 and 532, as good candidate biomarkers for drug sensitivity testing. The study provides novel knowledge to assess delousing drug sensitivity by ET50-PCR bioassay in Chilean salmonid farms.

Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits

The fish pathogen Flavobacterium psychrophilum is currently one of the main pathogenic bacteria hampering the productivity of salmonid farming worldwide. Although putative virulence determinants have been identified, the genetic basis for variation in virulence of F. psychrophilum is not fully understood. In this study, we analyzed whole-genome sequences of a collection of 25 F. psychrophilum isolates from Baltic Sea countries and compared genomic information with a previous determination of their virulence in juvenile rainbow trout. The results revealed a conserved population of F. psychrophilum that were consistently present across the Baltic Sea countries, with no clear association between genomic repertoire, phylogenomic, or gene distribution and virulence traits. However, analysis of the entire genome of four F. psychrophilum isolates by hybrid assembly provided an unprecedented resolution for discriminating even highly related isolates. The results showed that isolates with different virulence phenotypes harbored genetic variances on a number of consecutive leucine-rich repeat (LRR) proteins, repetitive motifs in gliding motility-associated protein, and the insertion of transposable elements into intergenic and genic regions. Thus, these findings provide novel insights into the genetic variation of these elements and their putative role in the modulation of F. psychrophilum virulence.

Evaluation of Potential Transfer of the Pathogen Saprolegnia parasitica between Farmed Salmonids and Wild Fish.

Saprolegnia infections are among the main parasitic diseases affecting farmed salmonids. The distribution and potential transfer of Saprolegnia spp. between farms and the natural environment has been scarcely investigated. Therefore, this work aimed to study the diversity and abundance of oomycete species in salmonid farms, tributary water, and effluent water systems. Four trout farms in Italy and two Atlantic salmon farms in Scotland were considered. In Italian farms, 532 isolates of oomycetes were obtained from fish and water, at upstream, inside, and downstream the farms. In Scottish farms, 201 oomycetes isolates were obtained from water outside the farm and from fish and water inside the farming units. Isolates were identified to the species level through amplification and sequencing of the ITS rDNA region. In Italy, S. parasitica was significantly more present in farmed than in wild fish, while in water it was more frequently isolated from the wild, particularly in effluent systems, not associated with more frequent isolation of S. parasitica in wild fish downstream the farm. In Scotland, S. parasitica was the most prevalent species isolated from fish, while isolates from water were mostly Pythium spp. with few S. parasitica isolates from upstream and downstream the farms.

Depletion of oxytetracycline plus epi-oxytetracycline residues in rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar) under field conditions in Chile

The objective of this research study was to estimate the withdrawal time (WT) for oxytetracycline (OTC), administered intraperitoneally to two species of salmonids, rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar). This was done in salmonid farms during the fattening phase in seawater, under field conditions. Seven cages from different marine farms were included, each as an experimental unit, treated with an intraperitoneal dose of OTC (in a range from 20 to 35 mg kg−1). From each sea cage, 10 fishes were randomly selected for laboratory analysis at each sampling point after treatment, which were variable according to the harvest of each cage. All selected fish were treated with a single dose of two different commercial OTC formulations; Formulation A (OTC 30%) and Formulation B (OTC 20%), both extra label. Study was performed according to VICH GL 57 guideline. Samples were kept cold until laboratory analysis. Homogenized samples were analyzed using a mass triple quadrupole spectrometer (Waters®, Xevo TQ-S micro). The analytical method was optimized for use in the laboratory and an internal validation procedure was performed following European Commission Decision 2002/657/EC for linearity, recovery and precision. The detection range, including the limit of detection (LOD) and limit of quantification (LOQ), were calculated according to VICH GL49 guidance.According to the degree days obtained from the residue depletion study and those observed in the last sampling, most of the sampled cages had concentrations that allow the veterinary drug to be suitable for a market with a maximum residue limit (MRL) value of 200 μg kg−1, but not for a market with an MRL of 10 μg kg−1, as might be expected, regardless of the dose and commercial veterinary drug used. Depending on the considered MRL, withdrawal times ranged from 5390 to 1676- and 4061–1641-degree days, for rainbow trout and Atlantic salmon, respectively. These estimates, obtained from field samples, can provide references regarding the WTs that must be considered in order to avoid the presence of OTC + 4-epi-OTC residues in Atlantic salmon and rainbow trout fillets, and thus protect the consumer health. Further studies are needed to assess the impact of other factors on WT under field conditions in different salmonid species.