Salmon Fry Research Articles

The Effects of Rearing Environment on Organization of the Olfactory System and Brain of Juvenile Sockeye Salmon, Oncorhynchus nerka.

Pacific salmon (Oncorhynchus spp.) hatch and feed in freshwater habitats, migrate to sea to mature, and return to spawn at natal sites. The final, riverine stages of the return migrations are mediated by chemical properties of the natal stream that they learned as juveniles. Like some other fish, salmon growth is asymptotic; they grow continuously throughout life toward a maximum size. The continued growth of the nervous system may be plastic in response to environmental variables. Due to the ecological, cultural, and economic importance of Pacific salmon, individuals are often reared in hatcheries and released into the wild as juveniles to supplement natural populations. However, hatchery-reared individuals display lower survivorship and may also stray (i.e., spawn in a non-natal stream) at higher rates than their wild counterparts. Hatchery environments may lack stimuli needed to promote normal development of the nervous system, thus leading to behavioral deficits and a higher incidence of straying. This study compared the peripheral olfactory system and brain organization of hatchery-reared and wild-origin sockeye salmon fry (Oncorhynchus nerka). Surface area of the olfactory rosette, diameter of the olfactory nerve, total brain size, and size of major brain regions were measured from histological sections and compared between wild and hatchery-origin individuals. Hatchery-origin fish had significantly larger optic tecta, and marginally insignificant, yet noteworthy trends, existed in the valvula cerebelli (hatchery>wild) and olfactory bulbs (hatchery<wild). We also found a putative difference in olfactory nerve diameter (dmin) (hatchery>wild), but the validity of this finding needs further analyses with higher resolution methods. Overall, these results provide insight into the potential effects of hatchery rearing on nervous system development in salmonids, and may explain behavioral deficits displayed by hatchery-origin individuals post-release.

Using parentage-based tagging to estimate survival of Chinook salmon fry in a large storage reservoir

Using parentage-based tagging to estimate survival of Chinook salmon fry in a large storage reservoir

Effects of 2D hydrodynamic model resolution on habitat estimates for rearing Coho Salmon in contrasting channel forms

AbstractEstimating the impacts of water allocation decisions on fish populations and habitat availability is an important part of environmental flow assessments, especially in locations where water resources are limited. Two‐dimensional hydrodynamic models (2DHMs) are commonly coupled with biological models to estimate fish habitat quality, area, and capacity across a range of proposed streamflows. Increasingly, resource managers are relying on landscape‐scale model domains with coarse model resolutions to maintain feasible computational loads, but this may affect habitat estimates if the mesh element size of the model exceeds the spatial scale relevant to the organism. We investigated how coarsening the resolution of a 2DHM influences the area and spatial distribution of estimated Coho Salmon (Oncorhynchus kisutch) fry habitats. We used an interpolation scheme that upscaled mesh elements from a high‐resolution (0.25 m2) 2DHM to quantify and visualize the effects of 2DHM resolution on estimates of Coho Salmon fry habitat for two contrasting channel morphologies and across a broad range of streamflows. Estimates of Coho Salmon fry habitat at increasingly coarser resolutions led to 20%–50% reductions in weighted usable habitat area (WUA) across several streamflow scenarios for a complex channel type, but did not impact estimates in a confined, flume‐like channel. Additionally, flow‐to‐habitat area relationships were not congruent at a given streamflow when resolution coarsened. Along with almost 500% more high‐quality habitat area estimated in the complex channel type over the confined, discrepancies in habitat area increased with higher flows in areas defined as optimal for rearing Coho Salmon fry. Considering that complex channel types contain critical habitat for Coho Salmon fry, this study suggests coarse 2DHM resolutions may exclude important wetted edge and off‐channel habitats from environmental flow assessments.

Flavobacterium facile sp. nov., isolated from water system of Atlantic salmon (Salmo salar) fry cultured in Chile.

Strain T-12T, an orange, Gram-stain-negative, non-motile, rod-shaped strain, was isolated in November 2013 from water samples collected from an Atlantic salmon (Salmo salar) fry culturing system at a fish farm in Chile. Phylogenetic analysis based on 16S rRNA sequences (1394 bp) revealed that strain T-12T belonged to the genus Flavobacterium, showing close relationships to Flavobacterium bernardetii F-372T (99.48 %) and Flavobacterium terrigena DS-20T (98.50 %). The genome size of strain T-12T was 3.28 Mb, with a G+C content of 31.1 mol%. Genome comparisons aligned strain T-12T with Flavobacterium bernardetii F-372T (GCA_011305415) and Flavobacterium terrigena DSM 17934T (GCA_900108955). The highest digital DNA-DNA hybridization (dDDH) values were 42.6 % with F. bernardetii F-372T (GCA_011305415) and 33.9 % with F. terrigena DSM 17934T (GCA_900108955). Pairwise average nucleotide identity (ANI) calculations were below the species cutoff, with the best results with F. bernardetii F-372T being: ANIb, 90.33 %; ANIm, 91.85 %; and TETRA, 0.997 %. These dDDH and ANI results confirm that strain T-12T represents a new species. The major fatty acids were iso-C15 : 0 and C15 : 1ω6с. Detected polar lipids included phospholipids (n=2), aminophospholipid (n=1), aminolipid (n=1) and unidentified lipids (n=2). The predominant respiratory quinone was menaquinone MK7 (80 %) followed by MK-6 (20 %). Phenotypic, chemotaxonomic, and genomic data support the classification of strain T-12T (=CECT 30410T=RGM 3222T) as representing a novel species of Flavobacterium, for which the name Flavobacterium facile sp. nov. is proposed.

Pink salmon productivity is driven by catchment hydrogeomorphology and can decline under a changing climate

Abstract Increased flood magnitude and frequency due to climate change can reduce the population productivity of organisms such as amphibian and fish species in river and stream systems; therefore, conserving habitats that maintain high productivity under such conditions is crucial. Here, we examined the relationship between the freshwater productivity of anadromous salmonids (measured as fry migrating to the ocean per spawner) and catchment hydrogeomorphology and identified the characteristics of rivers and streams that are prone to flood disturbance. We surveyed the spawner abundance and number of fry of pink salmon (Oncorhynchus gorbuscha) and measured environmental factors, including the average catchment slope and stream power, as characteristics of hydrogeomorphology, in 10 streams in the Shiretoko Peninsula, northern Japan. We then used generalised linear mixed models to predict the freshwater productivity of pink salmon populations in each catchment across the study region under current and future climatic conditions. The productivity of pink salmon in the study region differed among the sampled catchments and was negatively affected by the average catchment slope, stream power, and maximum daily precipitation averaged over the catchment. Namely, flood disturbance reduced the freshwater productivity of pink salmon, and salmon productivity in individual catchments was explained by catchment hydrogeomorphology. The predicted future productivity with increased precipitation was also lower than the current productivity. Our approach can be applied to other salmonids that have similar spawning behaviour to pink salmon. Highly productive catchments under the future climatic conditions predicted by the present study should be prioritised for conservation to ensure a sustainable salmonid population.

Massive stocking of chum salmon (Oncorhynchus keta) fry fattens non-native brown trout (Salmo trutta) in Hokkaido, Japan.

In Japan, stocked chum salmon (Oncorhynchus keta) fry may have become the perfect prey for non-native brown trout (Salmo trutta), which are popular targets of anglers. If this is the case, fry stocking which is intended to boost commercial fishing may be helping to sustain the populations of an invasive predator. We used dietary and biochemical analyses to examine whether brown trout quickly restore their nutritional status following wintertime declines by preying upon chum salmon fry that are stocked in spring. We targeted six rivers in Hokkaido, Japan, three with fry stocking and three without. Changes in brown trout condition factor, triglyceride contents in muscle and serum, serum insulin-like growth factor-1 (IGF-1; an indicator of short-term growth), and docosahexaenoic acid (DHA; an essential fatty acid abundant in fish) content in muscle were examined between before stocking and during the stocking period in the six rivers. Dietary analysis showed that brown trout preyed on fry during the stocking period in all stocked rivers. Their nutritional status tended to be higher during the stocking period than before stocking in stocked rivers, but not in unstocked rivers. These results suggest that the massive stocking of chum salmon fry provides brown trout with the perfect prey to quickly restore their nutritional status and fuel increased growth; this may therefore be a controversial issue among stakeholders.

Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection

Excessive usage of antibiotics threatens the bacterial diversity in the microbiota of animals. An alternative to antibiotics that has been suggested to not disturb the microbiota is (bacterio)phage therapy. In this study, we challenged germ-free and microbially colonized yolk sac fry of Atlantic salmon with Flavobacterium columnare and observed that the mere presence of a microbiota protected the fish against lethal infection. We then investigated the effect of phage- or oxytetracycline treatment on fish survival and rearing water bacterial community characteristics using 16S rRNA gene amplicon sequencing. Phage treatment led to an increased survival of F. columnare-challenged fish and reduced the relative amounts of the pathogen in the water microbiota. In the absence of F. columnare, phage treatment did not affect the composition or the α-diversity of the rearing water microbiota. In the presence of the phage’s host, phage treatment induced minor changes to the bacterial community composition, without affecting the α-diversity. Surprisingly, oxytetracycline treatment had no observable effect on the water microbiota and did not reduce the relative abundance of F. columnare in the water. In conclusion, we showed that phage treatment prevents mortality while not negatively affecting the rearing water microbiota, thus suggesting that phage treatment may be a suitable alternative to antibiotics. We also demonstrated a protective effect of the microbiota in Atlantic salmon yolk sac fry.

DHA and EPA levels in a piscivorous fish changed by preying upon stocked salmon fry

Increases in prey population size can affect the physiology and ecology of upper-trophic level organisms. This phenomenon is known as a bottom-up effect. For example, the increased abundance of prey resources can trigger physiological (internal) changes in predators, such as improvements in nutritional status. However, these physiological aspects of bottom-up effects have not been considered. In this study, we tested the hypothesis that white-spotted charr Salvelinus leucomaenis, a salmonid fish, increases body stores of omega-3 fatty acids, especially docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA), by preying upon stocked hatchery-reared masu salmon Oncorhynchus masou fry in streams. The dynamics of fatty acid contents in charr inhabiting salmon-stocked and unstocked streams clearly support this hypothesis: fatty acid contents (DHA, EPA, and total fatty acid) increased after stocking in stocked streams, but not in unstocked streams. In addition, DHA increased with increasing body size of white-spotted charr and vice versa for EPA. The impacts of human activities, such as fish stocking, on freshwater ecosystems are a matter of serious concern for conservation. Future attempts to gain a comprehensive understanding of the impacts of fish stocking should consider not only community ecology but also physiology.

Long-term persistence of piscine orthoreovirus-1 (PRV-1) infection during the pre-smolt stages of Atlantic salmon in freshwater

Piscine orthoreovirus (PRV) causes heart and skeletal muscle inflammation (HSMI) in farmed Atlantic salmon. During salmon production cycles, HSMI has predominantly been observed after seawater transfer. More recently, better surveillance and longitudinal studies have detected occurrences of PRV-1 in freshwater broodstock farms and hatcheries. However, very little is known about the viral kinetics of PRV-1 or disease development of HSMI during these pre-smolt stages. In this study, we conducted a long-term PRV-1 challenge experiment to examine the profile of viral load, infectiousness and/or clearance in Atlantic salmon during their development from fry to parr stage. Atlantic salmon fry (mean weight: 1.1 ± 0.19 g) were infected with PRV-1 (high virulent variant) via intraperitoneal (IP) injection. The viral load reached a peak at 2–4 weeks post-challenge (wpc) in heart and muscle tissues. The virus was detected at relatively high levels in whole blood, spleen, and head kidney tissues until 65 wpc. Heart and muscle lesions typical of HSMI were clearly observed at 6 and 8 wpc but then subsided afterwards resolving inflammation. Innate and adaptive immune responses were elicited during the early/acute phase but returned to basal levels during the persistent phase of infection. Despite achieving high viremia, PRV-1 infection failed to cause any mortality during the 65-week virus challenge period. Cohabitation of PRV-1 infected fish (10 and 31 wpc) with naïve Atlantic salmon fry resulted in very low or no infection. Moreover, repeated chasing stress exposures did not affect the viral load or shedding of PRV-1 at 26 and 44 wpc. The present findings provide knowledge about PRV-1 infection in juvenile salmon and highlight the importance of continued monitoring and management to prevent and mitigate the PRV-1 infection in freshwater facilities.

Acute Toxicity of Copper to Three Species of Pacific Salmon Fry in Water with Low Hardness and Low Dissolved Organic Carbon.

Proposed development of a mine within Alaska's Bristol Bay watershed (USA) has raised concerns about the potential impact of copper (Cu) on Pacific salmon (Oncorhynchus spp.). We conducted 96-h flow-through bioassays using low-hardness and low dissolved organic carbon water to determine the acute lethal toxicity of Cu to sockeye (Oncorhynchus nerka), Chinook (Oncorhynchus tshawytscha), and coho salmon (Oncorhynchus kisutch) fry. We aimed to determine Cu toxicity under field-relevant water quality conditions and to assess three methods of calculating ambient Cu criteria: the biotic ligand model (BLM), a multiple linear regression model endorsed by the US Environmental Protection Agency, and the hardness-based model currently used by the State of Alaska. The criteria generated by all models were below 20% lethal Cu concentrations by factors ranging from 2.2 to 54.3, indicating that all criteria would be protective against mortality. The multiple linear regression-based criteria were the most conservative and were comparable to BLM-based criteria. The median lethal concentrations (LC50s) for sockeye, Chinook, and coho were 35.2, 23.9, and 6.3 µg Cu/L, respectively. We also used the BLM to predict LC50s for each species. Model predictions differed from empirical LC50s by factors of 0.7 for sockeye and Chinook salmon, and 1.1 for coho salmon. These differences fell within the acceptable range of ±2, indicating the model's accuracy. We calculated critical lethal Cu accumulation values for each species to account for differing water chemistry in each bioassay; the present study revealed that coho salmon were most sensitive to Cu, followed by sockeye and Chinook salmon. Our findings underscore the importance of considering site- and species-specific factors when modeling Cu toxicity. The empirical data we present may enhance Cu risk assessments for Pacific salmon. Environ Toxicol Chem 2023;42:2440-2452. © 2023 SETAC.

The stability and composition of the gut and skin microbiota of Atlantic salmon throughout the yolk sac stage.

The bacterial colonization of newly hatched fish is important for the larval development and health. Still, little is known about the ontogeny of the early microbiota of fish. Here, we conducted two independent experiments with yolk sac fry of Atlantic salmon that were (1) either reared conventionally, with the eggs as the only source for bacteria (egg-derived microbiota; EDM) or (2) hatched germ-free and re-colonized using lake water (lake-derived microbiota; LDM). First, we characterized the gut and skin microbiota at 6, 9, and 13 weeks post hatching based on extracted RNA. In the second experiment, we exposed fry to high doses of either a fish pathogen or a commensal bacterial isolate and sampled the microbiota based on extracted DNA. The fish microbiota differed strongly between EDM and LDM treatments. The phyla Proteobacteria, Bacteroidetes, and Actinobacteria dominated the fry microbiota, which was found temporarily dynamic. Interestingly, the microbiota of EDM fry was more stable, both between replicate rearing flasks, and over time. Although similar, the skin and gut microbiota started to differentiate during the yolk sac stage, several weeks before the yolk was consumed. Addition of high doses of bacterial isolates to fish flasks had only minor effects on the microbiota.

A correlation between seasonally changing photoperiod, whole body lipid, and condition factor in juvenile spring Chinook salmon (Oncorhynchus tshawytscha).

The regulation of lipid stores is a central process for the physiology and ecology of fishes. Seasonal variation in lipid stores has been directly linked to survival of fishes across periods of food deprivation. We assessed whether a seasonally changing photoperiod was correlated to seasonal changes in energetic status to help better understand these important processes. Groups of first feeding Chinook salmon fry were introduced to a seasonal photoperiod cycle, but the point of entrance into the seasonal cycle varied from near the winter solstice (December), to either side of the spring equinox (February & May). Temperature and feeding rate were similar for all treatments. Subsequently, condition factor and whole body lipid content were assessed through a seasonal progression. Throughout most of the experiment, length and weight did not differ between the different photoperiod treatments, however whole body lipid and Fulton's condition factor did. Furthermore, changes in both whole body lipid and Fulton's condition factor in all treatment groups followed a similar seasonal pattern that was inversely related to day length (highest K and lipid levels found during days with the least light). These results suggest that regardless of age or size, there is a correlation between seasonal changes in photoperiod and changes in body composition in juvenile Chinook salmonids.

Experimental transmission of piscine orthoreovirus-1 (PRV-1) in different life stages of Atlantic salmon (Salmo salar) and brown trout (Salmo trutta)

Piscine orthoreovirus -1 (PRV-1) causes the disease heart and skeletal muscle inflammation (HSMI) in farmed Atlantic salmon, and the virus has been detected in wild anadromous Atlantic salmon and brown trout. However, the infection prevalence, viral kinetics, and disease severity in different life stages of Atlantic salmon and brown trout are unknown. The current study aimed to evaluate and compare susceptibility to PRV-1 infection and development of HSMI in different life stages of anadromous Atlantic salmon (Salmo salar) and brown trout (Salmo trutta). We challenged Atlantic salmon and brown trout fry, parr, and post-smolts with PRV-1 by bath, cohabitation, or IP injection. The kinetics of viral infection and disease development were evaluated by RT-qPCR, in situ hybridization, and histology. Our results indicated that PRV-1 infection prevalence and viral kinetics depend on the developmental stage and challenge method in both Atlantic salmon and brown trout. All developmental stages of Atlantic salmon and brown trout can be infected with PRV-1. However, brown trout showed a lower infection prevalence, with positive cases exhibiting only mild infections without any pathological changes in the target organs, while all life stages of Atlantic salmon developed heart lesions characteristic of HSMI. These results strongly suggest that brown trout are less susceptible to PRV-1 infection than Atlantic salmon and further confirm the species-specific susceptibility and disease development for PRV-1 infection.

Black Soldier Fly Full-Fat Meal in Atlantic Salmon Nutrition – Part A: Effects on Growth Performance, Feed Utilization, Selected Nutriphysiological Traits and Production Sustainability in Fries

Abstract Black soldier fly larva meal (BSFM) application as an innovative feed material has been developed in aquaculture nutrition. However, recent scientific literature is still lacking in the case of insect meal effects on different stages of salmonid fish, and the vast majority of research is focused on farmed Atlantic salmon. Therefore, the holistic approach was undertaken in the cycle of two studies carried out: on fries and pre-smolts. This study aimed to evaluate the effect of fish meal (FM) replacement by full-fat BSFM in Atlantic salmon fry diets on the growth performance, feed utilization, crude protein and crude fat digestibility, somatic indices, histomorphology of intestines, and environmental sustainability. Additionally, pellet quality was assessed. Two experiments were performed on 360 Atlantic salmon fries – each of which lasted 60 days. For the first experiment, 240 individuals were distributed to four experimental groups: six replicates (tanks) per group and 10 fish per tank. For the second experiment, 120 individuals were distributed to four experimental groups: three replicates (tanks) per group and 10 fish per tank were used. The following groups were applied: CON – without the addition of full-fat BSFM and with 39% FM; BSFM5 – with 5% addition of full-fat BSFM and 36.1% FM; BSFM10 – with 10% full-fat BSFM and 33.3% FM; BSFM15 – with 15% addition of full-fat BSFM and 30.3% FM. The present study showed satisfactory results of BSFM inclusion at the levels of 5% and 10% as a replacement for fish meal in feeds for Atlantic salmon fries. No negative effects on growth performance, feed utilization, protein and fat digestibility, or intestinal structure were recorded. Simultaneously, insect meal inclusion in Atlantic salmon diets significantly improved the environmental sustainability of the feed. In the case of BSFM15, decreases in body weight gain, protein lipid efficiency ratio, and lipid efficiency ratio, as well as increases in feed conversion ratio, were observed. Therefore, the use of shares higher than 10% of BSFM in Atlantic salmon fries may not be recommended.

Comparative studies of effect of compound feeds on fish-breeding and biochemical properties of juvenile chum salmon

Effectiveness of starter fodders is examined for the low-temperature rearing pools in the salmon fish hatchery Savushkina (Severo-Kurilsk). In May 2022, the experimental compound feed developed in TINRO was compared with the control fodder Aller Aqua (made in Denmark) when feeding of chum salmon fry. Both fodders complied with the veterinary and sanitary requirements of the Euro-Asian Economic Union in terms of quality and safety. The following fish breeding indices were determined for the experimental/control fodders after 47 days of testing: feeding ratio 0.670/0.467; mean daily gain 1.255/1.547 %; mean final weight 0.630/0.735 g; absolute weight growth 0.287/0.392 g; mortality (survival) 0.50 (99.50)/0.48 (99.52) %. Increasing of the water and minerals content and noticeable decreasing of the protein and fat content were detected in tissues of the control samples of fry by comparative biochemical analysis before and after the testing, whereas the content of protein and minerals had increased in tissues of the experimental samples. Thus, suitability and effectiveness of the experimental starter fodder for rearing of juvenile chum salmon in the low-temperature environment is proven by combination of several indices. To intensify the weight gain of juveniles, the experiments will be continued to adjust the composition of mixed feed for juvenile chum salmon in the cold-water conditions, with a principal restriction of the growth intensifiers (hormones) use. The starter compound feed developed in TINRO is recommended for using in rearing of chum salmon fry.

Long-term microbial community structures and dynamics in a commercial RAS during seven production batches of Atlantic salmon fry (Salmo salar)

The microbiota of recirculating aquaculture systems (RAS) is of major importance for optimal fish health. However, the microbial communities in commercial RAS are highly complex and more knowledge is needed to potentially control and maintain beneficial microbial communities for good fish production. In this study we monitored microbial communities in a commercial RAS producing Atlantic salmon fry (Salmo salar) during seven consecutive production batches. The water of rearing tanks and the water sump downstream of the biofilter/upstream of the UV, as well as biofilm of the wall of the rearing tanks and the fixed bed biofilter were analysed using 16S rRNA gene amplicon sequencing to elucidate the spatial-temporal microbial dynamics. The results showed that the microbiota composition of water and biofilm varied within and between the production batches, and that the fallowing periods had a substantial effect on the microbial communities. The correlation of the water and biofilm microbiota to fish presence in the system was confirmed by supervised machine learning. Shifts in the composition of the microbiota were identified in conjunction with variations in organic matter loading both during production and fallowing. In addition, variables like oxygen saturation, biomass, and feed type, showed good correlation with variations in the water microbiota composition. Although microbiota changed at fallowing, the microbiota returned to similar compositions during the production phases and was especially evident for the water microbiota. This indicates that the development of microbiota composition is strongly dictated by the similar selection pressure in the system. Nitrifying communities were dominated by Nitrospira, and the third most abundant Nitrospira OTUs were related to the comammox Nitrospira nitrificans. The microbial communities in the biofilter biofilm and water were significantly different but shared abundant taxa and followed the same temporal microbial dynamics and indicates an interaction between the biofilter biofilm and the suspended bacteria. CFU analysis showed that the fraction of rapid-growing bacteria was significantly higher in the rearing water than in the water sump upstream the UV disinfection, indicating that disinfection upstream the rearing tanks allowed for growth of opportunistic bacteria. A community with considerable potential for opportunistic regrowth can have consequences for the microbial water quality and the resistance against pathogen invasion The absence of an in-line disinfection step or placing the disinfection unit upstream the biofilter might provide better microbial water quality and a more resilient system against pathogen proliferation.

Morphological differentiation of Amur fall Chum salmon juveniles Oncorhynchus keta (Salmonidae) of natural and hatchery origin

The results of a comparative analysis of the number of myotomes and fin rays in the dorsal and anal fins of Amur fall chum salmon fry of artificial and natural origin are presented. Juveniles of natural origin were distinguished by large values of the analyzed morphological features. The results can be used for the determination of juvenile chum salmon of natural and artificial origin at the intra-basin level for large tributaries of the Amur River.

Growth and mortality of sympatric Atlantic salmon and brown trout fry in fluctuating and stable flows

AbstractSub‐daily fluctuations in streamflow may have adverse effects on the biota downstream of dams in hydropeaking‐regulated rivers. Although the stranding of salmonid fry is one documented effect of hydropeaking, little is known about the species‐specific behavioural and subsequent growth effects of sub‐daily flow fluctuations. We investigated the effects of sub‐daily flow fluctuation on growth, mortality and behaviour of sympatric Atlantic salmon (Salmo salar) and brown trout (S. trutta) fry (29–34 mm) in a laboratory experiment. The fluctuating flow treatment negatively affected growth and increased mortality for trout but not for salmon. The level of aggressive behaviour was similar in the fluctuating‐ and stable‐flow treatments. Within the fluctuating flow treatment, there was a trend that more fishes were visibly active above the substrate during low than high flow. These findings suggest that hydropeaking‐induced flow fluctuations may affect fry of different salmonid species in different ways and that brown trout fry may be more vulnerable to hydropeaking effects than Atlantic salmon fry. It can therefore be important to consider the possibility of divergent reactions by different fish species under hydropeaking situations and to incorporate species‐specific strategies to conserve culturally and economically relevant riverine fish species.

Evolution of tributary junctions and their capacity for rearing juvenile Chinook salmon (Oncorhynchus tshawytscha) on a regulated river

AbstractThe Trinity River in northern California was adjusting to unregulated flood and mining impacts when it was dammed and flow regulation began in 1960. We examine the subsequent evolution of the river's alluvial channel through 60 years of increases in regulated mainstem flow regimes in an unconfined and confined valley where Rush and Indian creeks respectively join the river 6.9 and 26.7 river kilometres from Lewiston Dam. The resulting capacity of the tributary junctions for rearing Chinook salmon fry in the current flow regime is evaluated with an empirical model developed for the Trinity River. Results indicate that morphologic changes at Indian Creek were relatively minor after damming because mainstem flows were restricted to a narrow channel in comparison to the channel at Rush Creek. Conversely, active channel and bar areas significantly declined at Rush Creek because the mainstem sediment supply was more severely reduced by flow regulation that enabled riparian vegetation to colonize the expansive alluvial surfaces that were present. These changes reduced instream habitat, suggesting salmon populations in large valleys may be at higher risk below dams than in smaller valleys where the reduced flow is confined to an already narrow channel. However, the relatively wide and unconfined valley responded more positively to increases in flow and sediment through the regulatory periods to yield significantly higher capacities for rearing Chinook fry. Therefore, while unconfined reaches may be particularly susceptible to change when a river is dammed, they may also provide the greatest opportunity for restoration of salmon populations.

Pulsed supplies of small fish facilitate time-limited intraguild predation in salmon-stocked streams.

Pulsed supplies of prey generally increase predator food intake. However, it is unclear whether this holds true when predators and pulsed prey are in the same guild (i.e. intraguild (IG) predators and prey). IG prey may increase IG-predator food intake through predation, but they may decrease food intake through competition. To test these hypotheses, we compared the food intake of white-spotted charr (Salvelinus leucomaenis) (IG predator) in streams that were stocked or unstocked with masu salmon (Oncorhynchus masou) fry (IG prey) in streams in Hokkaido, Japan. One day after stocking, mean stomach content weight of charr was six times higher than in unstocked streams due to fry consumption. In particular, large charr showed intense piscivory. However, predation on fry was rare after about three weeks. Some factors that could explain this time-limited IG predation include the growth and decreasing abundance of fry over time and the acquisition of predator-avoidance behaviour. In days other than the first-day post-stocking, food intake by charr did not differ between stocked and unstocked streams. No effects of interspecific competition on charr food intake were observed.