Root Responses Research Articles

Shoot and root responses to low phosphorus and their genotypic variability in selected cultivars of Japanese core collections of maize and soybean

ABSTRACT Low phosphorus (P) stress in agricultural soils is a global problem in crop production. A greater understanding of the genotype-specific responses under low P stress is imperative for producing P-efficient genotypes. This study first evaluated Japanese core collections of maize (86 landraces) and soybean (94 landraces) to low P under hydroponic conditions. Ten cultivars of each species were further evaluated in a pot experiment with two P supply rates: low P (10 mg P kg−1) and high P (50 mg P kg−1). Root morphology, acid phosphatase (ACP) activity, and rhizosphere soil pH were characterized 30 days after planting. A sufficient genotypic variation was found in both species under both P conditions. A significant decrease in biomass, except in maize cultivar JMC 76 and soybean cultivar GmJMC033, and increased phosphorus use efficiency (PUE) under low P conditions were observed. The maize cultivars: JMC 76, JMC 57, JMC 58, and JMC 8 and soybean cultivars: GmJMC033, GmJMC040, and GmJMC085 showed distinctive root modifications characterized by the high root-to-shoot ratio (RRS), total root length (TRL) and specific root length (SRL) under low P stress indicating their low P tolerance. Maize had more significant ACP activity compared to soybean under low P stress. The maize cultivars, which showed low P tolerance, were highly dependent on root morphological traits rather than physiological traits (ACP activity, rhizosphere acidification, and PUE), whereas soybean cultivars were dependent on both traits. In conclusion, the plasticity of the root system is crucial in both maize and soybean to tolerate P deficiency. These genotype-specific adaptations could be combined with agronomic strategies to enhance the overall P-use efficiency in cropping systems.

Exploring cadmium stress responses in sisal roots: Insights from biochemical and transcriptome analysis.

Sisal is a leaf fiber crop with a high integrated value and a wide range of uses in the application of soil remediation of heavy metal contamination. This study provides a preliminary understanding of how sisal responds to Cd stress and presents a theoretical basis for exploring the potential of sisal in the remediation of Cd-contaminated soils. In this work, the activities of the antioxidant enzymes (SOD, POD, and CAT) of sisal were measured by hydroponics with the addition of CdCl2·2.5H2O and different concentrations of Cd stress. Whole transcriptome sequencing (RNA-Seq) analysis was performed with lllumina sequencing technology, and qRT-PCR was conducted to verify the differential genes. The results obtained were as follows: (1) Short-term low concentration of Cd stress (20 mg/kg) had a transient promotion effect on the growth of sisal roots, but Cd showed a significant inhibitory effect on the growth of sisal roots over time. (2) Under different concentrations of Cd stress, the Cd content in sisal root was greater than that in sisal leaf, and Cd accumulated mainly in sisal roots. (3) With the increase of Cd stress concentration, the antioxidant enzyme catalase activity increased, peroxidase activity showed a decreasing trend, and superoxide dismutase showed a trend of increasing and then decreasing. (4) Transcriptome sequencing analysis detected 123 differentially expressed genes (DEGs), among which 85 genes were up-regulated and 38 genes were down-regulated. The DEGs were mainly concentrated in flavonoid biosynthesis and glutathione metabolism, and both processes had some regulatory effects on the Cd tolerance characteristics of sisal. This study elucidated the physiological, biochemical and transcriptomic responses of sisal under cadmium stress, and provided a theoretical basis for the ecological restoration function of sisal.

An efficient direct organogenesis protocol for in vitro clonal propagation of Rubia cordifolia L.

This comprehensive study delves into the intricate process of in vitro clonal propagation of R. cordifolia, with a particular focus on optimizing a method of direct organogenesis. The choice of direct organogenesis over indirect organogenesis is driven by the propensity for somaclonal variations associated with the latter. The presented research explores the critical factors influencing direct organogenesis, including the selection of appropriate explants and the optimum use of plant growth regulators. Notably, nodal explants have demonstrated great potential for regeneration, and the choice of cytokinins such as kinetin (KIN) and 2-isopentenyladenine (2-iP) for shoot induction has proven highly effective, with 1.0 mg/L KIN supplementation to MS media emerging as the most favourable choice resulting in 12.14 ± 1.58 shoots and 29.78 ± 1.93 axillary buds. Subsequent adventitious rooting using indole-3 butyric acid (IBA) and indole-3-acetic acid (IAA) resulted in a 100% rooting response. Among the concentrations tested, 1.0 mg/L IBA was found most effective, yielding the best rooting response (22.9 ± 1.06 roots/ micro-shoot). Acclimatization of in vitro cultures was achieved by gradually exposing them to natural conditions, maintaining high humidity and minimizing photorespiration. The morphological transformations observed, including robust leaf development contributed to the high acclimatization success (100% survival). Additionally, the genetic stability was confirmed using DNA-based ISSR markers, with complete monomorphism indicating no variations among the regenerants. The efficient direct organogenesis protocol developed in this study may prove a valuable contribution towards the mass clonal propagation and conservation of R. cordifolia, an industrially and medicinally important plant.

Nonbinary fungal signals and calcium-mediated transduction in plant immunity and symbiosis.

Chitin oligomers (COs) are among the most common and active fungal elicitors of plant responses. Short-chain COs from symbiotic arbuscular mycorrhizal fungi activate accommodation responses in the host root, while long-chain COs from pathogenic fungi are acknowledged to trigger defence responses. The modulation of intracellular calcium concentration - a common second messenger in a wide variety of plant signal transduction processes - plays a central role in both signalling pathways with distinct signature features. Nevertheless, mounting evidence suggests that plant immunity and symbiosis signalling partially overlap at multiple levels. Here, we elaborate on recent findings on this topic, highlighting the nonbinary nature of chitin-based fungal signals, their perception and their interpretation through Ca2+ -mediated intracellular signals. Based on this, we propose that plant perception of symbiotic and pathogenic fungi is less clear-cut than previously described and involves a more complex scenario in which partially overlapping and blurred signalling mechanisms act upstream of the unambiguous regulation of gene expression driving accommodation or defence responses.

Unpacking the current internal displacement crisis in Ethiopia: root cause, governance and response

ABSTRACT Forced internal displacement has become one of the prominent issues in the world today. Ethiopia is not an exception to this problem. The country has been witnessing the internal displacement of millions of people particularly since Prime Minister Abiy assumed power in 2018. However, the topic has not received adequate scholarly attention and this paper aims to fill in this gap and provide a contextualized and distinctive perspective by examining the root causes of the current internal displacement crisis, the governance mechanisms, and the responses taken by the government. As the finding reveals, the ideological antecedent of ethnic federalism has been the underlying drive behind ever-increasing conflict-induced internal displacements across different parts of the country. The government has been reluctant to recognize IDPs existence (particularly conflict-induced displacements) up until now and tried to address the IDPs issue in a fragmented manner. Yet, these governance and response undertakings were not without their setbacks. In conclusion, conflict-induced displacements are likely to continue unabated and remain a challenge for the country for the foreseeable future unless the ethnic-based political structure is somehow addressed.

Transcriptome Analyses Reveal Distinct Defense Strategies in Chili Plants under Soilborne Disease Intervention

Chili (Capsicum annuum L.) is highly susceptible to soilborne diseases, thereby presenting a significant threat that results in considerable yield losses in chili production. The exploration of genes conferring resistance and the underlying defense mechanisms presents a promising strategy for bolstering plant disease control. In this study, we selected two distinct cultivars, the disease-sensitive ‘Hailan 99’ and the disease-tolerant ‘Sanxiaqing’, to elucidate the molecular basis of their responses to soilborne disease intervention. We conducted a comprehensive analysis of root morphological characteristics and transcriptome profiles under stress conditions. Our findings revealed that, when subjected to soilborne disease intervention, these two cultivars exhibited contrasting root system characteristics and responses, reflecting diverse defense strategies. The disease-resistant cultivar demonstrated superior adaptability, possibly owing to its capacity for swift recognition of pathogen effectors, activation of defense responses, and effective containment of infection at localized sites, thus impeding disease progression. Noteworthy genes such as T459_04053, implicated in effector recognition; MSTRG.26158, MSTRG.30886, and T459_22510, associated with secondary metabolite biosynthesis; and T459_05615, partaking in the autophagy pathway, along with other differentially expressed genes linked to effector recognition, immune activation, and modulation of cell death processes, offer valuable insights into enhancing soilborne disease resistance in chili. Furthermore, these findings contribute to an enhanced understanding of the molecular mechanisms underlying soilborne disease resistance in diverse plant crops.

Investigation of the response of Platycodongrandiflorus (Jacq.) A. DC to salt stress using combined transcriptomics and metabolomics

BackgroundPlatycodon grandiflorus (Jacq.) A. DC is a famous traditional Chinese medicine in China and an authentic medicine in Inner Mongolia. It has been traditionally used as an expectorant in cough and also has anti-inflammatory and other pharmacological effects. As a homologous plant of medicine and food, P. grandiflorus is widely planted in Northeast China. Soil salinity isa limiting factor for its cultivation. In this study, we comprehensively described the physiological characteristics of P. grandiflorus and combined transcriptomics and metabolomics to study the response of roots of P. grandiflorus to salt stress.ResultsOverall, 8,988 differentially expressed genes were activated and significantly altered the metabolic processes. In total, 428 differentially abundant metabolites were affected by salt stress. After moderate and severe salt stress, most of the differentially abundant metabolites were enriched in the L-phenylalanine metabolic pathway. Through the comprehensive analysis of the interaction between key genes and metabolites, the main pathways such as lignin compound biosynthesis and triterpene saponin biosynthesis were completed. The relative content of compounds related to lignin biosynthesis, such as caffeic acid, coniferin, and syringing, increased under salt stress, and the related genes such as PAL, C4H, and the key enzyme gene UGT72E2 were activated to adapt to the salt stress. Platycodon saponin is one of the major triterpene saponins in P. grandiflorus, and Platycodin D is its most abundant major bioactive component. Under severe salt stress, Platycodin D level increased by nearly 1.77-fold compared with the control group. Most of the genes involved insynthetic pathway of Platycodin D, such as HMGCR, GGPS, SE, and LUP, were upregulated under salt stress.ConclusionSalt stress led to a decrease in the biomass and affected the activities of antioxidant enzymes and contents of osmotic regulators in the plant. These results provided not only novel insights into the underlying mechanisms of response of P. grandiflorus to salt stress but also a foundation for future studies on the function of genes related to salt tolerance in the triterpenoid saponin biosynthesis pathway.

Boron deficiency responses in maize (Zea mays L.) roots

AbstractBackgroundBoron (B) is an essential micronutrient for plants. Dicot plants respond to insufficient B supply by altering root architecture and root hair growth. How root systems of rather low‐B demanding monocot species such as maize (Zea mays L.) respond to B deficiency in terra has not been experimentally resolved, yet.AimsThe study aims to investigate root responses and their physiological consequences under B deficiency during the vegetative growth of maize.MethodsB73 wild‐type (WT) maize and its root hairless rth3 mutant were grown under varying B supply conditions in soil columns and in an automated root phenotyping facility. Biomass data, root system architecture traits, the mineral elemental composition and molecular B‐deficiency responses were quantified.ResultsThough having very low leaf B concentrations, no major growth deficit, apart from chlorotic stripes on leaves, was recorded on maize root and shoot development, with or without root hairs, on B‐deficient conditions. Although leaf B concentration of the rth3 mutant is significantly lower under B‐deficient and under B‐surplus conditions compared to the WT, the rth3 mutant neither developed a larger total root length, more fine roots nor displayed a higher expression of B uptake transporters as compensatory adaptations.ConclusionsStrikingly, maize plants did neither react with an inhibited root growth nor by a compensatory root foraging behaviour to severe B‐deficient in terra growth conditions. This is rather atypical for plants. The performance and altered leaf B concentrations of rth3 mutants may be biased by secondary effects, such as an overall reduced root growth.

Integrative physiological, critical plant endogenous hormones, and transcriptomic analyses reveal the difenoconazole stress response mechanism in wheat (Triticum aestivum L.)

Difenoconazole (DFN) is widely utilized as a fungicide in wheat production. However, its accumulation in plant tissues has a profound impact on the physiological functions of wheat plants, thus severely threatening wheat growth and even jeopardizing human health. This study aims to comprehensively analyze the dynamic dissipation patterns of DFN, along with an investigation into the physiological, hormonal, and transcriptomic responses of wheat seedlings exposed to DFN. The results demonstrated that exposure of wheat roots to DFN (10 mg/kg in soil) led to a significant accumulation of DFN in wheat plants, with the DFN content in roots being notably higher than that in leaves. Accumulating DFN triggered an increase in reactive oxygen species content, malonaldehyde content, and antioxidant enzyme activities, while concurrently inhibiting photosynthesis. Transcriptome analysis further revealed that the number of differentially expressed genes was greater in roots compared with leaves under DFN stress. Key genes in roots and leaves that exhibited a positive response to DFN-induced stress were identified through weighted gene co-expression network analysis. Metabolic pathway analysis indicated that these key genes mainly encode proteins involved in glutathione metabolism, plant hormone signaling, amino acid metabolism, and detoxification/defense pathways. Further results indicated that abscisic acid and salicylic acid play vital roles in the detoxification of leaf and root DFN, respectively. In brief, the abovementioned findings contribute to a deeper understanding of the detrimental effects of DFN on wheat seedlings, while shedding light on the molecular mechanisms underlying the responses of wheat root and leaves to DFN exposure.

Metabolomics analysis reveals the effect of removing cotyledons on salt tolerance in castor plant roots during early seedling establishment

Castor is an important oil crop with moderate salt tolerance that is grown worldwide. The early seedling stage is the most vulnerable phase during a plant’s lifecycle in a saline environment. Cotyledons play an important role in seedling establishment as the storage and first photosynthetic organ, and in the resistance of the seedling to salt stress. However, how cotyledons affect the metabolic response of castor roots in saline environments is unclear. Here, liquid chromatography-mass spectrometry analytical methods were used to examine the effects of removing cotyledons (no cotyledons removed, NR; one cotyledon removed, OR; both cotyledons removed, TR) on the metabolite changes in the roots under salt stress. The results showed that removing cotyledons inhibited the growth of TR roots much greater than NR or OR roots. Metabolomics analysis showed that the roots of TR seedlings had fewer metabolites involved in the salt stress response than NR seedlings. Moreover, the KEGG pathway enrichment analysis demonstrated that salt-induced metabolites were associated with major biological pathways related to tropane, piperidine, and pyridine alkaloid biosynthesis; amino acid biosynthesis; phenylpropanoid biosynthesis; amino sugar and nucleotide sugar metabolism, as well as arginine and proline metabolism. However, the contents of these metabolites decreased or did not change significantly in the TR roots compared to the NR roots under salt stress. Additionally, the contents of caffeyl alcohol, scopoletin, and syringin in the phenylpropanoid biosynthetic pathway increased significantly in the roots of TR seedlings under salt stress compared to the control treatment. Therefore, we concluded that castor plants with cotyledons enhanced particular metabolic pathways in the roots that protected cell membrane structure, maintained cell osmotic potential, resisted reactive oxygen species and provided energy under salt stress. In addition, the roots of castor plants without cotyledons may be resistant to salt stress by enhancing phenylpropanoid biosynthesis to maintain cell differentiation and enhance root lignification. Taken together, these findings provide new insight into the physiological functions of cotyledons in the aboveground-belowground interactions of castor plants under salt stress.

Recovering from trampling: The role of dauciform roots to functional traits response of Carex filispica in alpine meadow.

In the natural habitats of China, dauciform roots were only described in degraded alpine meadows. It was found that the presence of dauciform roots of Carex filispica was related to the advantage of multiple functional traits after trampling, reflecting short-term resistance. However, the long-term response of dauciform roots to trampling and the recovery of C. filispica with and without dauciform roots to trampling require further studies. In this study, different intensities of trampling (0, 50, 200 and 500 passages) were performed in an alpine meadow. One year later, individuals with and without dauciform roots were separated and their functional traits related to the economic spectrum of leaves and roots were measured as a reflection of recovery from trampling. The results showed that: (1) 1 year after trampling, the number of dauciform roots showed an increase with trampling intensity; (2) 1 year later, there was no significant difference in the response of economic spectrum traits among trampling intensities, or between plants with and without dauciform roots; (3) the number of dauciform roots was positively correlated with the leaf area of both individuals with and without dauciform roots, as well as with the biomass of those without dauciform roots; and (4) plants with more resource-conservative roots showed an advantage after trampling recovery: specifically, plants with dauciform roots showed such an advantage in the control group, which was lost with a leaning towards resource-acquisitive roots and an increased density of dauciform roots once trampled. In contrast, plants without dauciform roots showed a significant advantage of conservative roots only after trampling. In conclusion, the presence of dauciform roots is related to the plants' position on the root economic spectrum, thereby influencing the recovery of C. filispica from trampling. Carex filispica showed strong recovery from trampling after 1 year, which makes it an adequate choice for ecological restoration in alpine meadows. Dauciform roots showed a positive correlation with the aboveground growth of both plants with and without them, however, it requires a lab-controlled study to confirm whether there is indeed a positive effect on the growth of neighbouring plants.

Genotypic differences in systemic root responses to mechanical obstacles.

As roots grow through the soil to forage for water and nutrients, they encounter mechanical obstacles such as patches of dense soil and stones that locally impede root growth. Here, we investigated hitherto poorly understood systemic responses of roots to localised root impedance. Seedlings of two wheat genotypes were grown in hydroponics and exposed to impenetrable obstacles constraining the vertical growth of the primary or a single seminal root. We deployed high-resolution in vivo imaging to quantify temporal dynamics of root elongation rate, helical root movement, and root growth direction. The two genotypes exhibited distinctly different patterns of systemic responses to localised root impedance, suggesting different strategies to cope with obstacles, namely stress avoidance and stress tolerance. Shallower growth of unconstrained seminal roots and more pronounced helical movement of unconstrained primary and seminal roots upon localised root impedance characterised the avoidance strategy shown by one genotype. Stress tolerance to localised root impedance, as exhibited by the other genotype, was indicated by relatively fast elongation of primary roots and steeper seminal root growth. These different strategies highlight that the effects of mechanical obstacles on spatiotemporal root growth patterns can differ within species, which may have major implications for resource acquisition and whole-plant growth.

Transcriptional landscape of cotton roots in response to salt stress at single-cell resolution

Increasing soil salinization has led to severe reductions in plant yield and quality, and investigating the molecular mechanism of salt stress response is therefore an urgent priority. In this study, we systematically analyzed the response of cotton roots to salt stress using single-cell transcriptomics technology; 56 281 high-quality cells were obtained from 5-day-old lateral root tips of Gossypium arboreum under natural growth conditions and different salt treatments. Ten cell types with an array of novel marker genes were identified and confirmed by in situ RNA hybridization, and pseudotime analysis of some specific cell types revealed their potential differentiation trajectories. Prominent changes in cell numbers under salt stress were observed for outer epidermal and inner endodermal cells, which were significantly enriched in response to stress, amide biosynthetic process, glutathione metabolism, and glycolysis/gluconeogenesis. Analysis of differentially expressed genes identified in multiple comparisons revealed other functional aggregations concentrated on plant-type primary cell wall biogenesis, defense response, phenylpropanoid biosynthesis, and metabolic pathways. Some candidate differentially expressed genes encoding transcription factors or associated with plant hormones also responsive to salt stress were identified, and the function of Ga03G2153, annotated as auxin-responsive GH3.6, was confirmed by virus-induced gene silencing. The GaGH3.6-silenced plants showed a severe stress-susceptible phenotype, and physiological and biochemical measurements indicated that they suffered more significant oxidative damage. These results suggest that GaGH3.6 might participate in cotton salt tolerance by regulating redox processes. We thus construct a transcriptional atlas of salt-stressed cotton roots at single-cell resolution, enabling us to explore cellular heterogeneity and differentiation trajectories and providing valuable insights into the molecular mechanisms that underlie plant stress tolerance.

Zoom-in to molecular mechanisms underlying root growth and function under heterogeneous soil environment and abiotic stresses.

The review describes tissue-specific and non-cell autonomous molecular responses regulating the root system architecture and function in plants. Phenotypic plasticity of roots relies on specific molecular and tissue specific responses towards local and microscale heterogeneity in edaphic factors. Unlike gravitropism, hydrotropism in Arabidopsis is regulated by MIZU KUSSIE1 (MIZ1)-dependent asymmetric distribution of cytokinin and activation of Arabidopsis response regulators, ARR16 and ARR17 on the lower water potential side of the root leading to higher cell division and root bending. The cortex specific role of Abscisic acid (ABA)-activated SNF1-related protein kinase 2.2 (SnRK2.2) and MIZ1 in elongation zone is emerging for hydrotropic curvature. Halotropism involves clathrin-mediated internalization of PIN FORMED 2 (PIN2) proteins at the side facing higher salt concentration in the root tip, and ABA-activated SnRK2.6 mediated phosphorylation of cortical microtubule-associated protein Spiral2-like (SP2L) in the root transition zone, which results in anisotropic cell expansion and root bending away from higher salt. In hydropatterning, Indole-3-acetic acid 3 (IAA3) interacts with SUMOylated-ARF7 (Auxin response factor 7) and prevents expression of Lateral organ boundaries-domain 16 (LBD16) in air-side of the root, while on wet side of the root, IAA3 cannot repress the non-SUMOylated-ARF7 thereby leading to LBD16 expression and lateral root development. In root vasculature, ABA induces expression of microRNA165/microRNA166 in endodermis, which moves into the stele to target class III Homeodomain leucine zipper protein (HD-ZIP III) mRNA in non-cell autonomous manner. The bidirectional gradient of microRNA165/6 and HD-ZIP III mRNA regulates xylem patterning under stress. Understanding the tissue specific molecular mechanisms regulating the root responses under heterogeneous and stress environments will help in designing climate-resilient crops.

Correction to: Mechanical responses of Chrysopogon zizanioides roots under cyclic loading conditions

Correction to: Mechanical responses of Chrysopogon zizanioides roots under cyclic loading conditions

Comparative analysis of anatomical characteristics and phenolic compounds of two highbush blueberry (Vaccinium corymbosum L.) cultivars with different rooting ability of semi-hardwood cuttings

There is no information on morphological, anatomical or phenolic concentration differences between blueberry cultivars that could be related to the differential rooting responses. In the present work, such differences were evaluated comparing the rooting zones of cuttings from two blueberry cultivars (‘Jewel’ and ‘Violeta’ with 4n and 2n ploidy level, respectively). The parameters were measured during 150 days of rooting (rooting day after cutting insertion; RAI) at 30-day interval after treatment with 3 g/L of IBA. Stem length, stem diameter and number of leaves and buds were measured and tissue sections from cuttings were stained to measure tissue thickness. Also, the total phenolic content (TPC) by Folin-Ciocalteu method and the phenolic profile by liquid chromatography coupled to a diode array detection were also evaluated in rooting zones. ‘Jewel’ rooted earlier and in higher percentage than 'Violeta'. ANOVA showed that phenolic compounds, in a higher extent, and some morphological and anatomical parameters, in a lower extent, had a positive effect on rooting capacity. In both blueberry cultivars, the cuttings with the highest phenolic content presented an early rooting capacity. The multivariate analyses allowed us to corroborate these results. FiPLS selected common variables (coumaric acid and stem diameter) and specific variables depending on the cultivar (gallic acid, stem length and number of leaves for ‘Jewel’; and, vanillic acid, rutin, and cortex thickness for ‘Violeta’). PCA allowed to group the ‘Violeta’ samples (unrooted and rooted at 60, 90, 120 and 150 RAI) in compact homogeneous clusters with an adequate explanation rate (44.7 %). From all parameters, stem diameter seems to be inversely related, and cortex thickness and p-coumaric acid and rutin seems to be positively related to the earliest rooting day after insertion (RAI 60), while the largest the stem, the earlier the rooting. In future works, more cultivars and other parameters and phenolic compounds that can induce the rooting in cuttings, including their evolution over time, should be investigated.

Exogenous IAA enhances low potassium tolerance of sweetpotato by regulating root response strategy

ABSTRACT Plant roots are sensitive to potassium (K+) deficiency signals. Therefore, regulating root growth by exogenous methods is a vital strategy to improve low K+ tolerance of sweetpotato. We studied the effects of exogenous indole-3-acetic acid (IAA) on growth, K+ absorption, and root characteristics in sweetpotato exposed to low K+ treatment (LK). LK significantly inhibited dry mass, K+ concentration and accumulation, as well as the root elongation (length) and branching (forks and crossings) in sweetpotato seedlings. However, exogenous IAA increased the length, ratio, and density of lateral roots and promoted absorption and accumulation of K+, which effectively alleviated the inhibitory effect of low K+. Exogenous IAA also increased the expression levels of auxin synthesis (IbYUC6 and IbTAR2) and transport (IbPIN1, IbPIN3, and IbPIN8) genes in leaves and roots, which promoted the increase of endogenous IAA content. Furthermore, exogenous IAA was more effective on low-K-tolerant variety (XS32) than low-K-sensitive variety (NZ1) under LK stress, depending on their different IAA synthesis and transport strategies. These results indicated that exogenous IAA enhanced root responsiveness of sweetpotato to low K+ stress by modulating auxin biosynthesis and transport, thereby improving the tolerance of sweetpotato to low K+ stress.

Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection

BackgroundPhytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited.MethodsA comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi).ResultsMore genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca2+- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to P. capsici.ConclusionThe candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper–P. capsici.

Early salinity response in root of salt sensitive Olea europaea L. cv Leccino

The present study evaluates the molecular mechanisms involved, under salt stress, in the roots of Olea europaea L. cultivar Leccino (salt sensitive). We hypothesized that during the first phase of salt application the inactivation of proton pumps H+-ATPases and sodium antiporter Na+/H+ in roots determine the sodium translocation in the shoot. To verify this hypothesis, plants of olive tree (cv. Leccino) were treated with 60 mM NaCl salt and sampled after 24 h, 48 h, and seven days.Data proved that Leccino's stem accumulate Na+ after seven days of exposure. In root, the relative expressions of eight genes (five P-ATPase, one V-ATPase sub E, SOS1, and NHX) indicated that NaCl treatment led to a reduction in P-ATPase 1 and SOS1 expressions after 24 h, then NHX and V-ATPase sub E after 48 h and finally P-ATPase 8 after 7 days. The reduction of the electrochemical proton gradient due to the under-expression of P-ATPase is consistent with the accumulation of sodium in the roots and inactivation of SOS1 and the vacuolar Na+/H+ exchanger. These two genes have a clear biological role in the exclusion of sodium from the cytosol, mobilizing it outwards.In conclusion, these results provide the evidences that H+-pumping expression was decreased by salinity treatment in the early phase of root salt response in sensible olive cultivar Leccino.

Transcriptomic analysis revealing the molecular response to arsenic stress in desert Eremostachys moluccelloides Bunge

The saline, alkaline environment of arid soils is conducive to the diffusion of the metalloid arsenic (As). Desert plants in this area are of great ecological importance and practical value. However, there are few studies on the mechanism of arsenic action in desert plants. Therefore, in this study, Eremostachys moluccelloides Bunge was treated with different concentrations of As2O5 [As(V)] to analyze the physiological, biochemical, and transcriptomic changes of its roots and leaves and to explore the molecular mechanism of its response to As(Ⅴ) stress. The activities of catalase, superoxidase, peroxidase, and the contents of malondialdehyde and proline in roots and leaves first increased and then decreased under the As(Ⅴ) stress of different concentrations. The content of As was higher in roots than in leaves, and the As content was positively correlated with As(Ⅴ) stress concentration. In the differentially expressed gene analysis, the key enzymes of the oxidative stress response in roots and leaves were significantly enriched in the GO classification. In the KEGG pathway, genes related to the abscisic acid signal transduction pathway were co-enriched and up-regulated in roots and leaves. The related genes in the phenylpropanoid biosynthesis pathway were significantly enriched and down-regulated only in roots. In addition, the transcription factors NAC, HB-HD-ZIP, and NF-Y were up-regulated in roots and leaves. These results suggest that the higher the As(V) stress concentration, the more As is taken up by roots and leaves of E. molucelloides Bunge. In addition to causing greater oxidative damage, this may interfere with the production of secondary metabolites. Moreover, it may improve As(V) tolerance by regulating abscisic acid and transcription factors. The results will deepen our understanding of the molecular mechanism of As(Ⅴ) response in E. moluccelloides Bunge, lay the foundation for developing and applying desert plants, and provide new ideas for the phytoremediation of As pollution in arid areas.