Root Exclusion Research Articles

Salt tolerance in mungbean is associated with controlling Na and Cl transport across roots, regulating Na and Cl accumulation in chloroplasts and maintaining high K in root and leaf mesophyll cells.

Salinity tolerance requires coordinated responses encompassing salt exclusion in roots and tissue/cellular compartmentation of salt in leaves. We investigated the possible control points for salt ions transport in roots and tissue tolerance to Na+ and Cl- in leaves of two contrasting mungbean genotypes, salt-tolerant Jade AU and salt-sensitive BARI Mung-6, grown in nonsaline and saline (75 mM NaCl) soil. Cryo-SEM X-ray microanalysis was used to determine concentrations of Na, Cl, K, Ca, Mg, P, and S in various cell types in roots related to the development of apoplastic barriers, and in leaves related to photosynthetic performance. Jade AU exhibited superior salt exclusion by accumulating higher [Na] in the inner cortex, endodermis, and pericycle with reduced [Na] in xylem vessels and accumulating [Cl] in cortical cell vacuoles compared to BARI Mung-6. Jade AU maintained higher [K] in root cells than BARI Mung-6. In leaves, Jade AU maintained lower [Na] and [Cl] in chloroplasts and preferentially accumulated [K] in mesophyll cells than BARI Mung-6, resulting in higher photosynthetic efficiency. Salinity tolerance in Jade AU was associated with shoot Na and Cl exclusion, effective regulation of Na and Cl accumulation in chloroplasts, and maintenance of high K in root and leaf mesophyll cells.

Application of Trichoderma asperellum spore powder helps maintain ionic balance and photosystem II activity in wolfberry in saline soil

The mechanisms how Trichoderma enhances plant salt tolerance remain to be further dissected. Trichoderma asperellum spore powder (TS) was supplemented to saline soil around the stem base of potted wolfberry (Lycium chinense), and the role of Trichoderma asperellum in ameliorating salt tolerance of wolfberry was investigated with emphasis on ionic balance and photosystems II (PSII) activity. Plant dry weight was significantly increased by TS supplement, suggesting that Trichoderma asperellum promoted wolfberry growth in saline soil. As TS supplement elevated leaf and root K+/Na+ by increasing K+ content and decreasing Na+ content, Trichoderma asperellum improved ionic balance in wolfberry under saline soil stress, and the mechanism depended on that Trichoderma asperellum raised root Na+ exclusion and blocked root K+ loss. Consequentially, oxidative stress was ameliorated by Trichoderma asperellum according to lower leaf lipid peroxidation and H2O2 content in plants with TS supplement. Moreover, PSII was protected against oxidative injury and could maintain higher photochemical efficacy with TS supplement. K and J steps in prompt chlorophyll fluorescence transients were lowered by TS supplement, suggesting that Trichoderma asperellum alleviated salt-induced inhibition on electron transport at both PSII donor and acceptor sides, and consistently, more PSII centers became reactive. In addition, higher delayed chlorophyll fluorescence transients under TS supplement corroborated that Trichoderma asperellum enhanced whole PSII performance. Overall, Trichoderma asperellum helped maintain ionic balance by preventing K+ loss and elevating Na+ exclusion in roots and protect PSII by alleviating oxidative stress in wolfberry cultivated in saline soil.

Biochar is colonized by select arbuscular mycorrhizal fungi in agricultural soils

Arbuscular mycorrhizal fungi (AMF) colonize biochar in soils, yet the processes governing their colonization and growth in biochar are not well characterized. Biochar amendment improves soil health by increasing soil carbon, decreasing bulk density, and improving soil water retention, all of which can increase yield and alleviate environmental stress on crops. Biochar is often applied with nutrient addition, impacting mycorrhizal communities. To understand how mycorrhizas explore soils containing biochar, we buried packets of non-activated biochar in root exclusion mesh bags in contrasting agricultural soils. In this greenhouse experiment, with quinoa (Chenopodium quinoa) as the host plant, we tested impacts of mineral nutrient (as manure and fertilizer) and biochar addition on mycorrhizal colonization of biochar. Paraglomus appeared to dominate the biochar packets, and the community of AMF found in the biochar was a subset (12 of 18) of the virtual taxa detected in soil communities. We saw differences in AMF community composition between soils with different edaphic properties, and while nutrient addition shifted those communities, the shifts were inconsistent between soil types and did not significantly influence the observation that Paraglomus appeared to selectively colonize biochar. This observation may reflect differences in AMF traits, with Paraglomus previously identified only in soils (not in roots) pointing to predominately soil exploratory traits. Conversely, the absence of some AMF from the biochar implies either a reduced tendency to explore soils or an ability to avoid recalcitrant nutrient sources. Our results point to a selective colonization of biochar in agricultural soils.

Moving forward to understand the alteration of physiological mechanism by seed priming with different halo-agents under salt stress.

Soil salinity hampers the survival and productivity of crops. To minimize salt-associated damages in plant, better salt management practices in agriculture have become a prerequisite. Seed priming with different halo-agents is a technique, which improves the primed plant's endurance to tackle sodium. Salt tolerance is achieved in tolerant plants through fundamental physiological mechanisms- ion-exclusion and tissue tolerance, and salt-tolerant plants may (Na+ accumulators) or may not (Na+ excluders) allow sodium movement to leaves. While Na+ excluders depend on ion exclusion in roots, Na+ accumulators are proficient Na+ managers that can compartmentalize Na+ in leaves and use them beneficially as inexpensive osmoticum. Salt-sensitive plants are Na+ accumulators, but their inherent tissue tolerance ability and ion-exclusion process are insufficient for tolerance. Seed priming with different halo-agents aids in 'rewiring' of the salt tolerance mechanisms of plants. The resetting of the salt tolerance mechanism is not universal for every halo-agent and might vary with halo-agents. Here, we review the physiological mechanisms that different halo-agents target to confer enhanced salt tolerance in primed plants. Calcium and potassium-specific halo-agents trigger Na+ exclusion in roots, thus ensuring a low amount of Na+ in leaves. In contrast, Na+-specific priming agents favour processes for Na+ inclusion in leaves, improve plant tissue tolerance or vacuolar sequestration, and provide the greatest benefit to salt-sensitive and sodium accumulating plants. Overall, this review will help to understand the underlying mechanism behind plant's inherent nature towards salt management and its amelioration with different halo-agents, which helps to optimize crop stress performance.

Seasonal Dynamics of Soil Respiration and Its Autotrophic and Heterotrophic Components in Subtropical Camphor Forests

On a global scale, soil respiration (Rs), representing the CO2 flux between the soil surface and the atmosphere, ranks as the second-largest terrestrial carbon (C) flux. Understanding the dynamics between Rs and its autotrophic (Ra) and heterotrophic (Rh) components is necessary for accurately evaluating and predicting global C balance and net ecosystem production under environmental change. In this study, we conducted a two-year root exclusion experiment in subtropical China’s Camphor (Cinnamomum camphora (L.) Presl.) forests to assess seasonal changes in Ra and Rh and their relative contributions to Rs. Additionally, we examined the influence of environmental factors on the dynamics of Ra, Rh, and Rs. Our results showed that seasonal mean Rs values were 2.88 µmol m−2 s−1, with mean Ra and Rh of 1.21 and 1.67 µmol m−2 s−1, respectively, in the studied forests. On an annual basis, the annual values of mean Rs in the studied forests were 405 ± 219 g C m−2 year−1, with Rh and Ra accounting for 240 ± 120 and 164 ± 102 g C m−2 year−1, respectively. The seasonal mean ratio of Rh to Rs (Rh/Rs) was 58%, varying from 45 to 81%. Seasonal changes in Rs and Rh were strongly correlated with soil temperature but not soil water content. Both Rh and Rs increased exponentially with the average soil temperature measured in the topsoil layer (about 5 cm), with Q10 values of 2.02 and 1.73 for Rh and Rs, respectively. Our results suggest that the composition and activity of soil microbes and fauna play a primary role in releasing carbon flux from soil to the atmosphere in the studied forest ecosystems.

Effects of litter and root inputs on soil CH4 uptake rates and associated microbial abundances in natural temperature subalpine forests

Climate change altered the quantities of aboveground plant litter and root inputs, but the effects on soil CH4 uptake rates and underlying mechanisms remain unclear. To investigate these factors, a three-year detritus input and removal treatment (DIRT) study including six treatments (namely, CK, control; NL, litter removal; DL, double litter; NR, root exclusion; NRNL, root exclusion plus litter removal; and NRDL, root exclusion plus double litter) was conducted in broadleaf and coniferous forest subalpine forest ecosystems. The results showed that both the subalpine forest soils acted as sink for atmospheric CH4 across all treatments, while the broadleaf forest had consistently higher CH4 uptake rates than the coniferous forest. Based on the annual mean values, root exclusion (NR, NRNL and NRDL) significantly decreased soil CH4 uptake rates by 35.9 %, 31.0 % and 43.4 % in the broadleaf forest and 36.7 %, 31.9 % and 40.6 % in the coniferous forest compared with CK treatments, respectively. Meanwhile, the mean soil CH4 uptake rates were significantly reduced by 23.6 % and 17.3 % in the broadleaf forest and the coniferous forest under the DL treatments, respectively; nevertheless, the NL treatment significantly increased soil CH4 uptake rates by 19.68 % and 14.4 %, respectively. The results clearly demonstrated that root exclusion exerted a greater influence on soil CH4 uptake rates than plant litter manipulations. Correlation and redundancy analysis (RDA) revealed that the separation of root exclusion treatments from aboveground plant litter manipulations was based on higher soil water content, NH4+-N and NO3−-N concentrations, and lower DOC (dissolved organic carbon) concentrations and methanotroph pmoA gene abundance. The results suggest that future alterations in aboveground plant litter and root input, particularly a reduction in root input, can exert a stronger influence on regulating soil CH4 uptake than aboveground litter manipulations in subalpine forests with cold and humid climatic conditions in response to future climate scenarios.

Excluding Roots or Mycorrhizal Hyphae Alters the Microbial Community and Function by Decreasing Available C and N in a Subtropical Chinese Fir Forest

Carbon (C) inputs, primarily from roots and associated mycorrhizal hyphae, serve as crucial energy sources for microbial-driven C and nitrogen (N) cycling in the soil. However, our understanding of how soil microbial diversity, function, and associated soil properties respond to the exclusion of roots and their associated mycorrhizal hyphae remains limited. In our study, we conducted an experiment with no exclusion of roots or mycorrhizal hyphae (Control), exclusion of roots and retention of mycorrhizal hyphae (NR), and exclusion of roots and mycorrhizal hyphae (NRH) in a Chinese fir (Cunninghamia lanceolata) forest, the most important plantation in China. The soil properties, microbial community diversity and composition, and microbial function were investigated after 2 years of experiment exclusion. We found that exclusion of roots and hyphae significantly decreased DOC, DON, NH4+-N, and NO3−-N, but not SOC, TN, and TP, indicating that the exclusion of roots and mycorrhizal hyphae mainly reduced available C and N concentrations. Meanwhile, the species richness and Chao1 of bacteria and fungi were significantly reduced, primarily due to the decrease in available C and N levels. These findings suggest that the removal of roots and mycorrhizal hyphae results in a decrease in C and N availability, subsequently leading to a loss of microbial diversity. Compared to after the CT treatment, the relative abundances of Proteobacteria and Actinobacteria phyla were reduced after exclusion of roots and hyphae. However, the relative abundances of the phyla Acidobacteria, WPS2, Rozellomycota, and Glomeromycota showed an increase in exclusion treatments. Furthermore, the relative abundances of genes for C degradation (e.g., malQ, malZ, chi, rfbB, bglX, and ablA), C fixation (e.g., accA, icd, korA, and korB), and N fixation (nifS) were increased; conversely, the N degradation genes (e.g., nasA, nirB, ureC, and gdh2) were decreased in treatments involving excluding roots and hyphae. These results, in conjunction with the strong relationships between functional genes and DOC, DON, NH4+-N, and NO3−-N, suggest that microorganisms regulate functional genes to enhance C and N fixation or organic matter decomposition in response to C or N limitation resulting from root and mycorrhizal hypha exclusion. Collectively, our study revealed that the changes in roots-derived C directly altered available C and N in soil, which influenced the microbial community and function, and, in turn, regulated microbial-driven nutrient cycling in forest soils.

Roots exert greater influence on soil respiration than aboveground litter in a subalpine Cambisol

Aboveground plant litter and roots are primary sources of soil organic carbon (SOC), profoundly affecting soil respiration and SOC dynamics. With global change, the quantities of aboveground plant litter and root inputs into soil are changing in the subalpine region; however, the impacts of these changes on soil respiration and the quantity and quality of SOC remain unclear. Here, a three-year detritus input and removal treatment (DIRT) experiment that included six treatments (namely, control, CK; double litter, DL; litter removal, NL; root exclusion, NR; root exclusion plus double litter, NRDL; and root exclusion plus litter removal, NRNL) was conducted in a subalpine Cambisol on the eastern edge of the Tibetan Plateau to assess the different effects of aboveground litter and roots on soil respiration and the quantity and quality of SOC dynamics. Among the treatments, the mean soil respiration in NL, NR and NRNL treatments significantly decreased by 21.7%, 31.9% and 40.5%, respectively, compared to the CK treatment. When with intact roots, double litter (DL) had a positive impact on soil respiration, resulting in a 13.2% increase in soil respiration compared to the CK treatment. In contrast, when with root exclusion (in the absence of roots), combined root exclusion and litter addition (NRDL) hardly influence soil respiration compared with the NR treatment, resulting in a 30.5% decrease in soil respiration. The soil respiration, labile SOC content and the abundance of soil microbes exhibited similar patterns among treatments. Roots excluded (NR, NRDL, NRNL) exerted a stronger effects on soil respiration, temperature sensitivity of soil respiration (Q10), labile SOC content and the recalcitrance index of carbon (RIC) than aboveground plant litter manipulation (CK, DL, NL). Correlation analysis and redundancy analysis revealed that soil respiration and its Q10 were regulated by the quantity and quality of SOC substrates and the abundance of soil microbes. Our results highlighted that roots exerted greater influence on the quantity and quality of SOC, the abundance of soil microbes, soil respiration and its Q10 than aboveground litter manipulation in subalpine Cambisol in response to future climate scenarios, especially the mediating effect of the presence of roots on the function of aboveground plant litter.

Tree roots exert greater impacts on phosphorus fractions than aboveground litter in mineral soils under a Pinus sylvestris var. mongolica plantation

Detritus inputs from aboveground litter and belowground roots, as well as roots exudates sustain soil phosphorus (P) supply in forests, but how the aboveground litter and roots differentially and interactively drive soil P transformations and availability is poorly understood. We experimentally removed aboveground litter, and then excluded roots in litter intact/removed plots in a nutrient-poor Mongolian pine (Pinus sylvestris var. mongolica) plantation in northern China. Phosphorus fractions with different bioavailability (labile P, moderately labile P, stable P, and occluded P), P adsorption characteristics and related biochemical properties in mineral soils were examined five years after the establishment of the experiment. Root exclusion significantly reduced labile organic P by 56%, and did not affect other recalcitrant organic P fractions and total organic P in both the litter intact and removed plots. Root exclusion significantly elevated all inorganic P fractions by 21%–26% in the litter removed plots, but not in the litter intact plots. Litter removal alone did not change soil P fractions except that it slightly increased labile organic and stable inorganic P concentrations. Maximum P adsorption capacity was improved by litter removal, but maximum P buffer capacity was neither affected by litter removal nor by root exclusion. Soil organic P fractions were correlated closely with soil microbial biomass, acid phosphatase activities and soil organic carbon, while inorganic P fractions were correlated significantly with exchangeable Ca2+ concentration and pH. The results revealed the predominant role of roots in driving the mobilization of inorganic, as well as mineralization-immobilization of organic P in this Mongolian pine plantation, and highlighted the facilitation of aboveground litter on root driving mobilization of soil inorganic P.

Structure turnover times of grassland soils under different moisture regimes

Soil structure is a dynamic property of soils, which refers to temporal changes in the spatial arrangement of pores, organic matter, and minerals. Its turnover, i.e. the irreversible redistribution of soil constituents, determines essential soil functions including carbon storage. Structure turnover times and its response to biotic versus abiotic drivers have never been quantified directly under natural conditions. We used a novel combination of structure labelling with inert garnet particles and X-ray Computed Tomography to determine structure turnover times of two grassland topsoils with either access or exclusion of roots and fauna > 30 µm. Both, abiotic and biotic factors developed soil structure at a site-specific rate towards a dynamic equilibrium, at which bulk properties remain constant because creation and destruction of structural properties are in balance. Its turnover, however, was mainly determined by macrofaunal activity which varied with environmental conditions. Under dry conditions less favorable for bioturbation, the extrapolated structure turnover time was 33 ± 3 years, while being 16 ± 1 years under moist conditions. Previous studies on organic matter turnover determined in the vicinity of the experimental site showed similar turnover times for particulate organic matter. The similar turnover times suggest that the accessibility of particulate organic matter to decomposers is closely linked to structure turnover, thus highlighting the intimate nexus between structure evolution and carbon persistence in soil.

Effects of acid rain and root exclusion on soil organic carbon in Cunninghamia lanceolata and Michelia macclurei plantations.

Acid rain is one of most serious environment problems in China. The types of acid rain have gradually transformed from sulfuric acid rain (SAR) to mixed acid rain (MAR) and nitric acid rain (NAR) in recent years. Roots are one source of soil organic carbon and play an important role in the formation of soil aggregates. However, the changes in acid rain type and the effect of root removal on soil organic carbon in forest ecosystems are poorly understood. In this study, we removed roots and simulated acid rain with different types (SO42-:NO3- ratio of 4:1, 1:1, and 1:4) for three years in Cunninghamia lanceolata (CP) and Michelia macclurei (MP) plantations to analyze the changes of soil organic carbon and physical properties and to measure the size and mean weight diameter (MWD) of aggregates. Results showed that root removal in C. lanceolata and M. macclurei remarkably reduced soil organic carbon pool by 16.7 % and 21.5%, and soil recalcitrant carbon by 13.5% and 20.0%, respectively. Root removal substantially decreased the MWD and proportion and organic carbon content of soil macroaggregates in M. macclurei, but not in C. lanceolata. Acid rain did not affect soil organic carbon pool and soil aggregate structures. Our results indicated that roots promote soil organic carbon stabilization and that their contribution to the stability of soil organic carbon varies with forest types. Moreover, soil organic carbon stabilization is not affected by different types of acid rain in the short term.

Root exclusion methods for partitioning of soil respiration: Review and methodological considerations

Soil respiration is a vital process in all terrestrial ecosystems, through which the soil releases carbon dioxide (CO2) into the atmosphere at an estimated annual rate of 68–101 Pg carbon, making it the second highest terrestrial contributor to carbon fluxes. Since soil respiration consists of autotrophic and heterotrophic constituents, methods for accurately determining the contribution of each constituent to the total soil respiration are critical for understanding their differential responses to environmental factors and aiding the reduction of CO2 emissions. Owing to its low cost and simplicity, the root exclusion (RE) technique, combined with manual chamber measurements, is frequently used in field studies of soil respiration partitioning. Nevertheless, RE treatments alter the soil environment, leading to potential bias in respiration measurements. This review aims to elucidate the current understanding of RE, i.e., trenching (Tr) and deep collar (DC) insertion techniques, by examining soil respiration partitioning studies performed in several ecosystems. Additionally, we discuss methodological considerations when using RE and the combinations of RE with stable isotopic and modeling approaches. Finally, future research directions for improving the Tr and DC insertion methods in RE are suggested.

Tree roots exert greater influence on soil microbial necromass carbon than above-ground litter in subtropical natural and plantation forests

The stabilization of soil organic carbon (SOC) relies heavily on both the production of microbial necromass carbon (MNC) and its protection by clay minerals. Above- and below-ground carbon (C) sources differ not only in the C quality and quantity that drive MNC production but also in MNC-mineral interactions. Here we test the hypothesis that root litter and exudates play a more important role in the formation and stabilization of soil MNC than above-ground litterfall in a natural subtropical moist forest and a tree (Castanopsis carlesii) plantation of southeastern China. We employed a two-factorial design of field experiment consisting of four treatments: control (CT), litterfall exclusion (NL), root exclusion (NR), and no C input (NI). We found that NR treatment substantially reduced total soil MNC and both bacterial (BNC) and fungal (FNC) necromass C as well as fractions of MNC and FNC to total SOC in both natural and plantation forests, but did not alter ratios of FNC to BNC or BNC to total SOC. In comparison, NL treatment had no effect on the ratios of MNC, FNC or BNC to total SOC in both forests. Furthermore, NR treatment reduced both bacterial and fungal biomass, but NL treatment had no significant effect on bacterial or fungal biomass in the natural forests. Whereas the NR and NI treatments significantly reduced MNC and FNC in both forests, the NL treatment reduced MNC and FNC only in the natural forest and reduced BNC only in the plantation forest. Analysis of structural equation model revealed that the C treatments could alter the accumulation of MNC directly or indirectly through changing soil available substrates (i.e., DOC, NH4+) and microbial community structure. Our data suggests that plant roots exert a stronger influence on the production and stabilization of MNC than above-ground C source.

Effects of variable temperature and moisture conditions on respiration and nonstructural carbohydrate dynamics of tree roots

• Low soil moisture lowered the root respiration rate of boreal Scots pines. Root respiration was clearly higher in warm and dry than cool and moist year. • Root respiration peaked after the aboveground growth began to decrease. • The root fructose and glucose contents correlated negatively with soil moisture. The method used to determine root respiration should be selected carefully. In warming climates, soil water content (SWC) may act as an important factor in determining belowground carbon dynamics in boreal forests. Here, we estimated the respiration and nonstructural carbohydrate (NSC) concentrations of tree roots in a mature Scots pine ( Pinus sylvestris L.) stand in southern Finland during two growing seasons with contrasting weather conditions. Root respiration was estimated with four different methods: 1) incubating excised roots, 2) partitioning forest floor respirations with root exclusion, or 3) based on temperature response functions and 4) modelling with the whole-tree carbon model ‘CASSIA’. In addition, we conducted a drought experiment in a greenhouse to determine the effect of reduced soil-water availability on respiration by incubating soil and roots of Scots pine saplings. We observed that the respiration of incubated roots of Scots pine saplings and soil decreased with drying after excluding the effect of temperature on respiration (R RES ), soil being more sensitive to drought than roots. Similarly, R RES of incubated roots in the field was significantly decreased by lowered SWC, whereas respiration of the entire root system estimated with other methods was clearly higher in dryer and warmer than moister and cooler year. Nevertheless, incubated roots excavated from the topsoil are most affected by drying soil, which might not reflect the response of the entire root system. R RES of incubated roots was negatively associated with root fructose and glucose concentrations. At the same time, root fructose, glucose and sucrose concentrations were negatively associated with SWC due to their role in osmoregulation. Thereby it seems that R RES does not directly follow the changes in NSCs despite the apparent correlation. Our study highlights the responsive nature of root carbon dynamics in varying weather events that should be taken into account in estimating and modelling the impacts of warming climate.

Ericaceous dwarf shrubs contribute a significant but drought‐sensitive fraction of soil respiration in a boreal pine forest

Abstract Boreal forests often have a dense understorey of ericaceous dwarf shrubs with ecological adaptations that contrast those of the canopy‐forming trees. It is therefore important to quantify contributions by understorey shrubs to ecosystem processes and disentangle shrub‐ and tree‐driven responses to climatic factors. We quantified soil respiration driven by the pine canopy and the ericaceous shrub understorey over 3 years, using a factorial pine root exclusion and shrub removal experiment in a mature Pinus sylvestris forest. Soil temperature and moisture‐related responses of respiration attributed to autotrophs (shrubs, pine roots) and heterotrophs were compared. Additionally, we assessed effects of interactions between these functional groups on soil nitrogen availability and respiration. Understorey shrubs accounted for 22% ± 10% of total autotrophic respiration, reflecting the ericaceous proportion of fine root production in the ecosystem. Heterotrophic respiration constituted about half of total soil respiration. Shrub‐driven respiration was more susceptible to drought than heterotrophic‐ and pine‐driven respiration. While the respiration attributed to canopy and understorey remained additive, indicating no competitive release, the plant guilds competed for soil N. Synthesis. Ericaceous understorey shrubs accounted for a small, yet significant, share of total growing season soil respiration. Overlooking understorey respiration may lead to erroneous partitioning and modelling of soil respiration mediated by functional guilds with contrasting responses to soil temperature and moisture. A larger contribution by heterotrophs and pine root‐associated organisms to soil respiration under drought conditions could have important implications for soil organic matter accumulation and decomposition as the climate changes in boreal forests.

Effects of Litter and Root Manipulations on Soil Bacterial and Fungal Community Structure and Function in a Schrenk's Spruce (Picea schrenkiana) Forest.

Soil microorganisms are the key driver of the geochemical cycle in forest ecosystem. Changes in litter and roots can affect soil microbial activities and nutrient cycling; however, the impact of this change on soil microbial community composition and function remain unclear. Here, we explored the effects of litter and root manipulations [control (CK), doubled litter input (DL), litter removal (NL), root exclusion (NR), and a combination of litter removal and root exclusion (NI)] on soil bacterial and fungal communities and functional groups during a 2-year field experiment, using illumina HiSeq sequencing coupled with the function prediction platform of PICRUSt and FUNGuild. Our results showed that litter and root removal decreased the diversity of soil bacteria and fungi (AEC, Shannon, and Chao1). The bacterial communities under different treatments were dominated by the phyla Proteobacteria, Acidobacteria, and Actinomycetes, and NL and NR reduced the relative abundance of the first two phyla. For the fungal communities, Basidiomycetes, Ascomycota, and Mortierellomycota were the dominant phyla. DL increased the relative abundance of Basidiomycetes, while NL and NR decreased the relative abundance of Ascomycota. We also found that litter and root manipulations altered the functional groups related to the metabolism of cofactors and vitamins, lipid metabolism, biosynthesis of other secondary metabolites, environmental adaptation, cell growth, and death. The functional groups including ectomycorrhizal, ectomycorrhizal-orchid mycorrhizal root-associated biotrophs and soil saprotrophs in the fungal community were also different among the different treatments. Soil organic carbon (SOC), pH, and soil water content are important factors driving changes in bacterial and fungal communities, respectively. Our results demonstrate that the changes in plant detritus altered the soil microbial community structure and function by affecting soil physicochemical factors, which provides important data for understanding the material cycle of forest ecosystems under global change.

Changes in carbon inputs affect soil respiration and its temperature sensitivity in a broadleaved forest in central China

Soil respiration, as an important process in global carbon cycle, is drastically stimulated by warming. Changing plant carbon inputs caused by intensified human disturbances and climate change can complexly influence soil respiration and its temperature sensitivity (Q10). Although a number of experiments have been established in the world to explore the effects of changing carbon inputs, it remains a challenge to predict the direction and magnitude of changes in soil respiration and Q10 due to high spatiotemporal variability of climatic zone and ecosystem. Therefore, we conducted a field manipulative experiment to examine the impact of litter removal and root exclusion on soil respiration and Q10 in a deciduous broad-leaved forest in transition zone between subtropical and warm temperate zone. The results showed that litter removal significantly reduced soil respiration, microbial biomass carbon, soil organic carbon, total nitrogen and soil moisture. In addition, litter removal altered soil microbial community composition, expressed in increase of Gram-positive / Gram-negative bacteria ratio and percentage of actinomycetes, and enhanced microbial physiological stress index. Root exclusion significantly increased Q10 by elevating soil C/N ratio, which supporting “C quality-temperature” hypothesis. The study indicates that root exclusion may accelerate soil respiration under warming. Our study provides insights to improve carbon cycling models and accurately predict the consequences of climate change.

Lead tolerance is related to its root exclusion through the regulation of Fe uptake genes (TaNAAT1 and TaDMAS1) in hexaploid wheat

Lead (Pb) is toxic to plants. In this study, the differential tolerance to Pb in contrasting wheat (Triticum aestivum) genotype was studied cultivated under control and Pb-toxic (300 μM Pb) hydroponic conditions. Pb-toxicity caused retardation in morphological characteristics, membrane stability, cell viability and redox state in Bari Gom-26 (Pb-sensitive), but not in Akbar (Pb-tolerant), indicating that Akbar can combat Pb toxicity. Pb accumulation in root and shoot of was 5-fold lower in Akbar than that of Bari Gom-26, implying that restricting Pb uptake in roots may be linked to Pb tolerance. Also, we observed a significant increase of Fe in Bari Gom-26 accompanied by upregulation of TaNAAT1 (nicotianamine aminotransferase) and TaDMAS1 (deoxymugineic acid synthase), whereas Akbar showed steady Fe status and downregulation of TaNAAT1 in roots of genome A. This is correlated with the steady chlorophyll score and Fv/Fm (maximum quantum yield of PSII) in leaves of Akbar while these were severed affected in Bari Gom-26 that may be linked to Pb-induced oxidative damage. In interactome analysis, YS1 gene network (Fe-PS transporter) was found to interact with TaDMAS1. Genome A and B of TaNAAT1 were located in chloroplast while D was in mitochondria; however, A, B and D of TaDMAS1 were localized in the cytoplasm. Additionally, we observed no changes in citrate and malate in the roots of Akbar, implying the ability of this genotype to regulate Fe-chelation under Pb stress. These suggest that genetic variation in Pb-toxicity tolerance in wheat is primarily root-based and that the Pb limitation is primarily driven by strictly limiting Fe-uptake and chelation in roots. These findings may encourage breeding or transgenic strategies to develop Pb-tolerant wheat.

Roots alter soil microbial diversity and interkingdom interactions in diversified agricultural landscapes

The complex interactions between plant roots and soil microorganisms are, broadly, well described. Yet the patterns of microbe–microbe interaction and their association with the root functional traits are less known especially in plant communities at the edges of agricultural landscapes. To address this gap, we measured the active soil microbial communities with and without the presence of plant roots, using in situ root exclusions, in four plant communities at the edges of agricultural fields: undisturbed natural deciduous forests (FOREST1), coniferous forests (FOREST2), rehabilitated agroforests (AGROFOREST) and perennial herbaceous grass buffers (GRASS). Amplicon‐based analysis of 16S rRNA and ITS transcripts was used to evaluate soil bacterial, archaeal and fungal communities, and their interactions, with ‘roots' and with ‘no roots'. Plants roots were measured for a suite of functional traits and explored in association with microbial community composition. Significant differences in bacterial and archaeal but not fungal diversity were observed between soil plots with ‘roots' and with ‘no roots'. Network analysis illustrated intra and inter kingdoms co‐occurrence patterns respond to the presence of plant roots, with GRASS exhibiting distinct patterns in comparison to tree‐dominated soils. A shift in microbial hub from bacterial to fungal was observed with the exclusion of roots; Planctomycetes (OM190)_10 was replaced by Archaeorhizomyces in AGROFOREST site. Microbial taxa strongly correlate with root traits especially specific root length, root diameter and root tissue density indicating root traits are predictors of microbial community composition. This study validates the vital role of root traits in predicting plant–microbe interactions and highlights the key role of fungi in microbial interkingdom interactions when roots are absent. These findings have significant ecosystem level implications, with the rising interest in associated biodiversity in and at the edges of agricultural landscapes, this work suggests that plant community selection for specific root traits may drive microbial community structure and ecosystem services.

Belowground carbon dynamics in Scots pine stands

Boreal forest soils are globally one of the most extensive carbon storages, whereas soil respiration (CO2 efflux) forms the largest carbon flux from the ecosystem to the atmosphere. Current changes in the world climate may have unpredictable effects on belowground carbon processes, and thereby, on the carbon balance of boreal forests. To better understand the various processes in soil and to quantify the potential changes in the carbon cycle, forest-floor respiration (RFF) was partitioned into five different components, and tree-root respiration (RR) was estimated, using four different methods in a mature boreal Scots pine (Pinus sylvestris L.) stand in southern Finland. Non-structural carbohydrate (NSC) concentrations in tree roots were determined, and carbon allocation to belowground by trees was estimated with the whole-tree carbon model ‘CASSIA’. In addition, RR and heterotrophic soil respiration (RH) were separated using root exclusion in seven coniferous forests along a latitudinal gradient in Northern and Central Europe. The RR comprised almost half of the RFF, the RH almost a third, and ground vegetation and respiration of mycorrhizal hyphae the remaining fifth in the boreal Scots pine stand. While the annual RR decreased throughout the first three study years, the RH increased when the mycorrhizal roots were excluded from the treatments. The RR and most of the NSC concentrations were higher in the warmer years and lower in the cooler, as estimated with most of the methods. Three methods resulted in rather similar RR estimations, while the RR estimated with root incubation was significantly lower. The RR was over 50% of the annual photosynthesis in the northernmost forest stand, whereas in the southernmost stand it was only up to 15%. Carbon allocation to the belowground, as modelled with CASSIA was a third of the annual photosynthesis on average and almost 5% for the symbiotic mycorrhizae.