Abstract The genetic control of root color and carotenoid synthesis in carrot, Daucus carota L., was studied using 3 carrot cultivars, Kintoki Heian Nagabuto, KHN: Kintoki Osaka, KOS: Kintoki Davis, KDA, and 1 inbred line (W93). Genetic models describing the inheritance of red roots in the F2 were tested in backcross and F3 progenies. In Kintoki cultivars the major pigment is lycopene; beta-carotene is present in smaller amounts; zeta-carotene, gamma-carotene and phytofluene were also detected. In W93 the main pigments are beta-carotene and alpha-carotene; zeta-carotene, gamma-carotene and phytofluene also are detected. The pigments were separated into carotene and carotenol fractions by partition column chromatography. The pigments in the carotene fraction were studied qualitatively and quantitatively by thin layer chromatography. Orange (W93) was dominant to red (KHN, KOS, KDA) in the F1 progeny. The F2 segregation indicated that at least 2 genes are responsible for the differences between orange and red. The segregation of F3, backcrosses, and other progenies revealed the existence of dominant red as well as dominant orange, supporting the digenic composition of F2 populations and indicating the locus with the dominant orange allele to be epistatic to the locus with the dominant red allele. The homozygous recessive would be orange also. The analysis of progenies from the crosses W93 × ‘Kintoki’ suggested a dominant gene for accumulation of alpha-carotene in W93 and a dominant gene for the accumulation of lycopene in ‘Kintoki’.
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