Role Of Life-history Traits Research Articles

Salamanders reveal novel trajectories of amphibian MHC evolution.

Genes of the major histocompatibility complex (MHC) code for immune proteins that are crucial for pathogen recognition in vertebrates. MHC research in nonmodel taxa has long been hampered by its genomic complexity that makes the locus-specific genotyping challenging. The recent progress in sequencing and genotyping methodologies allows an extensive phylogenetic coverage in studies of MHC evolution. Here, we analyzed the peptide-binding region of MHC class I (MHC-I)in 30 species of salamanders from six families representative of Urodela phylogeny. This extensive dataset revealed an extreme diversity of MHC-I in salamanders, both in terms of sequence diversity (about 3000 variants) and architecture (2-22 gene copies per species). The signal of positive selection was moderate and consistent between both peptide-binding domains, but varied greatly between genera. Positions of positively selected sites mostly coincided with human peptide-binding sites, suggesting similar structural properties of MHC-I molecules across distant vertebrate lineages. Finally, we provided evidence for the common intraexonic recombination at MHC-I and for the role of life history traits in the processes of MHC-I expansion/contraction. Our study revealed novel evolutionary trajectories of amphibian MHC and it contributes to the understanding of the mechanisms that generated extraordinary MHC diversity throughout vertebrate evolution.

Learning from the past is not enough to survive present and future bleaching threshold temperatures

In the past decade, the frequency of mass coral bleaching events has increased due to seawater temperature anomalies persisting for longer periods. Coral survival from temperature anomalies has been based on how each species in each location responds to stress, which is unique to individual species and may be due to the way stressful experiences accumulate through time in the form of ecological and physiological memory. A deeper understanding of ecological and physiological memory in corals is necessary to understand their survival strategies into the future. Laboratory experiments can help us simulate seawater temperatures experienced by corals in the past and compare their responses to those of the present and future. In this study, we sampled corals with different life history traits from one location perturbed by seawater temperature incursions (variable site) and from a second, relatively undisturbed location (stable site). We sampled across two seasons to observe the responses to bleaching threshold temperatures in the past (1998–29 °C), present (2018–31 °C), and future (2050–33 °C). Corals were healthy at 29 °C and 31 °C, but a fast-growing, temperature-susceptible coral species experienced high mortality at 33 °C compared to a slow-growing, temperature-resistant coral species. Moreover, corals from the variable site and during the spring season fared better under temperature stress. The results of this study provide insight into the possible role of life-history traits on coral's response to seasons and locations in terms of memory to long-term and short-term thermal anomalies and climate change.

Modeling Pesticide Effects on Multiple Threatened and Endangered Cyprinid Fish Species: The Role of Life-History Traits and Ecology

Mechanistic models are invaluable in ecological risk assessment (ERA) because they facilitate extrapolation of organism-level effects to population-level effects while accounting for species life history, ecology, and vulnerability. In this work, we developed a model framework to compare the potential effects of the fungicide chlorothalonil across four listed species of cyprinid fish and explore species-specific traits of importance at the population level. The model is an agent-based model based on the dynamic energy budget theory. Toxicokinetic-toxicodynamic sub-models were used for representing direct effects, whereas indirect effects were described by decreasing food availability. Exposure profiles were constructed based on hydroxychlorothalonil, given the relatively short half-life of parent chlorothalonil. Different exposure magnification factors were required to achieve a comparable population decrease across species. In particular, those species producing fewer eggs and with shorter lifespans appeared to be more vulnerable. Moreover, sequentially adding effect sub-models resulted in different outcomes depending on the interplay of life-history traits and density-dependent compensation effects. We conclude by stressing the importance of using models in ERA to account for species-specific characteristics and ecology, especially when dealing with listed species and in accordance with the necessity of reducing animal testing.

Life history mediates the trade-offs among different components of demographic resilience.

Accelerating rates of biodiversity loss underscore the need to understand how species achieve resilience—the ability to resist and recover from a/biotic disturbances. Yet, the factors determining the resilience of species remain poorly understood, due to disagreements on its definition and the lack of large‐scale analyses. Here, we investigate how the life history of 910 natural populations of animals and plants predicts their intrinsic ability to be resilient. We show that demographic resilience can be achieved through different combinations of compensation, resistance and recovery after a disturbance. We demonstrate that these resilience components are highly correlated with life history traits related to the species’ pace of life and reproductive strategy. Species with longer generation times require longer recovery times post‐disturbance, whilst those with greater reproductive capacity have greater resistance and compensation. Our findings highlight the key role of life history traits to understand species resilience, improving our ability to predict how natural populations cope with disturbance regimes.

Behaviour and body patterns of Octopus vulgaris facing a baited trap: first-capture assessment

This study highlights for the first time individual differences in ethology and vulnerability of Octopus vulgaris (i.e. body postures, movements and skin displays) facing passive baited traps. Common octopus exposed to a baited trap during three consecutive first-capture tests exhibited diverse behavioural and body pattern sequences resembling when the octopus searches for and hunts its wild prey. Overall, they first visually recognized new objects or potential preys and rapidly moved out of the den, exploring, grabbing and approaching the trap with the arms (chemotactile exploration), and capturing the bait with the arms and feeding on top over long periods inside the trap. Simultaneously, O. vulgaris displayed diverse skin textural and chromatic signs, the regular pattern being the most frequent and long-lasting, followed by broad mottle, passing cloud and dark patterns. All individuals (n=8) caught the bait at least once, although only five octopuses (62.5%) entered the trap in all three tests. In addition, high variability among individuals was observed regarding behaviour and body patterns during the first-capture tests, which might evidence different individual temperaments or life-history traits. Differences in behavioural responses at individual level might have population consequences due to fisheries-induced selection, although there is a high necessity to assess how behavioural traits might play an important role in life-history traits of this species harvested by small-scale trap fisheries.

Exploring the role of life history traits and introduction effort in understanding invasion success in mammals: a case study of Barbary ground squirrels.

Invasive species-species that have successfully overcome the barriers of transport, introduction, establishment, and spread-are a risk to biodiversity and ecosystem function. Introduction effort is one of the main factors underlying invasion success, but life history traits are also important as they influence population growth. In this contribution, we first investigated life history traits of the Barbary ground squirrel, Atlantoxerus getulus, a species with a very low introduction effort. We then studied if their invasion success was due to a very fast life history profile by comparing their life history traits to those of other successful invasive mammals. Next, we examined whether the number of founders and/or a fast life history influences the invasion success of squirrels. Barbary ground squirrels were on the fast end of the "fast-slow continuum", but their life history was not the only contributing factor to their invasion success, as the life history profile is comparable to other invasive species that do not have such a low introduction effort. We also found that neither life history traits nor the number of founders explained the invasion success of introduced squirrels in general. These results contradict the concept that introduction effort is the main factor explaining invasion success, especially in squirrels. Instead, we argue that invasion success can be influenced by multiple aspects of the new habitat or the biology of the introduced species.

Investigating the role of life-history traits in mammalian genomes

Abstract Genome size evolution has intrigued many evolutionary biologists. Ultimately, the reasons that genomes have become large are proliferation of non-coding elements and/or duplication events. The proximate causes are related to phylogeny, life-history traits and environmental factors. Genome size in mammals exhibits little interspecific variation compared with other taxa. The proximate causes and the evolutionary patterns shaped by phylogeny or life-history traits are largely unknown for mammals. Here, with a dataset of 121 species of mammals, we studied the variations of genome size associated with life history using a comparative quantitative analysis. The results showed that the genome size was positively associated with body size, but not with four other life-history traits (i.e., gestation period, weaning age, litter size, and longevity) in these species. For Primates, Rodentia and Chiroptera, the genome size was not correlated with life-history traits. Our results suggest that evolution of a large genome may result from increased cell size and thus facilitate the evolution of large bodies.

Habitat continuity and stepping-stone oceanographic distances explain population genetic connectivity of the brown alga Cystoseira amentacea.

Effective predictive and management approaches for species occurring in a metapopulation structure require good understanding of interpopulation connectivity. In this study, we ask whether population genetic structure of marine species with fragmented distributions can be predicted by stepping-stone oceanographic transport and habitat continuity, using as model an ecosystem-structuring brown alga, Cystoseira amentacea var. stricta. To answer this question, we analysed the genetic structure and estimated the connectivity of populations along discontinuous rocky habitat patches in southern Italy, using microsatellite markers at multiple scales. In addition, we modelled the effect of rocky habitat continuity and ocean circulation on gene flow by simulating Lagrangian particle dispersal based on ocean surface currents allowing multigenerational stepping-stone dynamics. Populations were highly differentiated, at scales from few metres up to thousands of kilometres. The best possible model fit to explain the genetic results combined current direction, rocky habitat extension and distance along the coast among rocky sites. We conclude that a combination of variable suitable habitat and oceanographic transport is a useful predictor of genetic structure. This relationship provides insight into the mechanisms of dispersal and the role of life-history traits. Our results highlight the importance of spatially explicit modelling of stepping-stone dynamics and oceanographic directional transport coupled with habitat suitability, to better describe and predict marine population structure and differentiation. This study also suggests the appropriate spatial scales for the conservation, restoration and management of species that are increasingly affected by habitat modifications.

Incongruent range dynamics between co-occurring Asian temperate tree species facilitated by life history traits.

Postglacial expansion to former range limits varies substantially among species of temperate deciduous forests in eastern Asia. Isolation hypotheses (with or without gene flow) have been proposed to explain this variance, but they ignore detailed population dynamics spanning geological time and neglect the role of life history traits. Using population genetics to uncover these dynamics across their Asian range, we infer processes that formed the disjunct distributions of Ginkgo biloba and the co‐occurring Cercidiphyllum japonicum (published data). Phylogenetic, coalescent, and comparative data suggest that Ginkgo population structure is regional, dichotomous (to west–east refugia), and formed ˜51 kya, resulting from random genetic drift during the last glaciation. This split is far younger than the north–south population structure of Cercidiphyllum (~1.89 Mya). Significant (recent) unidirectional gene flow has not homogenized the two Ginkgo refugia, despite 2Nm > 1. Prior to this split, gene flow was potentially higher, resulting in conflicting support for a priori hypotheses that view isolation as an explanation for the variation in postglacial range limits. Isolation hypotheses (with or without gene flow) are thus not necessarily mutually exclusive due to temporal variation of gene flow and genetic drift. In comparison with Cercidiphyllum, the restricted range of Ginkgo has been facilitated by uncompetitive life history traits associated with seed ecology, highlighting the importance of both demography and lifetime reproductive success when interpreting range shifts.

The role of life history traits and habitat characteristics in the colonisation of a secondary floodplain by neobiota and indigenous macroinvertebrate species

Modification of streams and rivers has mediated range expansions of several species into areas beyond their natural distribution. In this study, a newly created secondary floodplain channel (SFC), with three connections to the Danube, was used as a model system to compare colonisation by indigenous versus non-indigenous species of macroinvertebrates. Three years after the opening of the channel, it was colonised by 210 taxa. Indigenous species were more abundant than non-indigenous ones, both in the channel as well as in the Danube, and colonisation was mostly determined by habitat characteristics. In non-indigenous species, proximity to the source habitat was the main explanatory variable. Non-indigenous colonisers mostly had indifferent functional traits, in contrast to indigenous macroinvertebrates. These differences were particularly pronounced in amphipods where an equal number of five species per group occurred. The results of this study suggest that the factors determining colonisation patterns of indigenous versus non-indigenous species with similar dispersal abilities can strongly differ. Consequently, the creation of specific habitat structures (gravel-dominated, high current flow, bank vegetation) in restoration of floodplain channels can increase competitiveness of native species valued in conservation, particularly if sufficiently long channels with limited edge effects to the source habitat are built.

Endohelminths in Bird Hosts from Northern California and an Analysis of the Role of Life History Traits on Parasite Richness.

The life history characteristics of hosts often influence patterns of parasite infection either by affecting the likelihood of parasite exposure or the probability of infection after exposure. In birds, migratory behavior has been suggested to affect both the composition and abundance of parasites within a host, although whether migratory birds have more or fewer parasites is unclear. To help address these knowledge gaps, we collaborated with airports, animal rescue/rehabilitation centers, and hunter check stations in the San Francisco Bay Area of California to collect 57 raptors, egrets, herons, ducks, and other waterfowl for parasitological analysis. After dissections of the gastrointestinal tract of each host, we identified 64 taxa of parasites: 5 acanthocephalans, 24 nematodes, 8 cestodes, and 27 trematodes. We then used a generalized linear mixed model to determine how life history traits influenced parasite richness among bird hosts, while controlling for host phylogeny. Parasite richness was greater in birds that were migratory with larger clutch sizes and lower in birds that were herbivorous. The effects of clutch size and diet are consistent with previous studies and have been linked to immune function and parasite exposure, respectively, whereas the effect of migration supports the hypothesis of "migratory exposure" rather than that of "migratory escape."

The role of life history traits in mammalian invasion success

Why some organisms become invasive when introduced into novel regions while others fail to even establish is a fundamental question in ecology. Barriers to success are expected to filter species at each stage along the invasion pathway. No study to date, however, has investigated how species traits associate with success from introduction to spread at a large spatial scale in any group. Using the largest data set of mammalian introductions at the global scale and recently developed phylogenetic comparative methods, we show that human‐mediated introductions considerably bias which species have the opportunity to become invasive, as highly productive mammals with longer reproductive lifespans are far more likely to be introduced. Subsequently, greater reproductive output and higher introduction effort are associated with success at both the establishment and spread stages. High productivity thus supports population growth and invasion success, with barriers at each invasion stage filtering species with progressively greater fecundity.

The role of life-history traits, selective pressure and hydrographic boundaries in shaping the genetic structure of the transparent goby,Aphia minuta

The transparent goby (Aphia minuta) is a small progenetic goby that displays a short life cycle with early reproductive maturity and represents a valuable fishery resource harvested by artisanal fleets in most part of its distributional range. This study aimed to define the genetic variability in A. minuta at five sampling sites within the Mediterranean Sea and one in the Atlantic Ocean through the analysis of 11 nuclear microsatellite loci. The results revealed that several genetic diversity estimators (expected and observed heterozygosities, mean number of alleles and allelic richness) were lower in the Atlantic Ocean than in the Mediterranean Sea, suggesting the role of past or current demographic events in shaping this pattern. The genetic structure was investigated using both classical genetic differentiation descriptors and Bayesian approaches, and by defining the current and past migration rates. The results obtained revealed a pronounced genetic structure within the Mediterranean Sea and suggest a very low current migration rate. The pattern of historical migration suggests the possible role of hydrographic boundaries in shaping the genetic structure detected in this species. In addition, the identification of loci under selection suggests the possible implication of selective pressures that are acting on genes connected with the peculiar life cycle of this gobiid fish.

Evaluating the role of life history traits and diversity on long-term stability of temperate forests of the Romanian Carpathians

Evaluating the role of life history traits and diversity on long-term stability of temperate forests of the Romanian Carpathians

Patterns, processes and regulatory mechanisms in sandy beach macrofauna: a multi-scale analysis

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 295:1-20 (2005) - doi:10.3354/meps295001 Patterns, processes and regulatory mechanisms in sandy beach macrofauna: a multi-scale analysis Omar Defeo1,*, Anton McLachlan2 1Centro de Investigación y de Estudios Avanzados del IPN, AP 73 Cordemex, 97310 Mérida, Yucatán, México 2College of Agricultural and Marine Sciences, Sultan Qaboos University, Oman *Email: odefeo@mda.cinvestav.mx Physical and biological factors govern community and population features of sandy beach macrofauna. At the macroscale, species richness decreases from tropical to temperate beaches, and from macrotidal dissipative to microtidal reflective beaches. At the species level, life history traits are highly plastic over latitudinal gradients; large-scale variations in environmental variables modulate intraspecific phenotypic differentiation. At the mesoscale, alongshore and across-shore distributions tend to be unimodal, bell-shaped within a beach, with abundance varying from the central region to the boundaries, even though environmental gradients (wave exposure, salinity) can cause asymmetries. Zonation is highly dynamic and not sharply defined. This is attributed to short- (hourly, daily) or medium- (seasonal) term reactions to environmental conditions, passive transport and sorting by the swash (e.g. recruits), active micro-habitat selection (e.g. adults), and intra- and interspecific interactions. Across-shore distribution may become multimodal due to intraspecific segregation by sizes during recruitment. At the microscale (individual neighbourhood or quadrat scale), behavioural factors and intra-/interspecific interactions become more important as density increases. Human induced impacts also generate variability in population demography, structure and dynamics. We identify physical-biological coupling at different temporal and spatial scales, emphasizing the role of life history traits in order to assess alternative regulatory mechanisms and processes. Our synthesis suggests that: (1) biological interactions are more important regulatory agents than previously thought: in benign dissipative beaches or undisturbed sites, intra- and interspecific competition can be more intense than in reflective beaches or disturbed sites, where the populations are physically controlled; (2) supralittoral forms are relatively independent of the swash regime and show no clear response to beach type; (3) marked long-term fluctuations are noticeable in species with planktonic larvae structured as metapopulations, due to environmental disturbances and stochasticity in reproduction and recruitment. KEY WORDS: Sandy beaches · Macrofauna · Communities · Populations · Patterns · Regulation · Processes Full text in pdf format NextExport citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 295. Online publication date: June 23, 2005 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2005 Inter-Research.

Morphological plasticity in response to shading in three Convolvulus species of different ecological breadth

We evaluated in common-garden experiments the morphological plasticity to shading of three Convolvulus species that occur in Chile and differ in ecological breadth. Convolvulus arvensis L. is a world weed distributed along the country, and is found in open as well as in shaded habitats. Convolvulus chilensis Pers. is a Chilean endemic species typical of coastal habitats, and is found in open to partially open sites. C.demissus choisy occurs only on slopes of the Andes of Chile and Argentina, habitats with high incidence of solar radiation. We hypothesized that the magnitude of phenotypic plasticity to shading of these species would correlate with their ecological breadth. Shading had a significant effect on internode length, petiole length, stem diameter, stem length, number of branches, leaf area, leaf shape, leaf biomass, and specific leaf area. Species differed in all the morphological traits except leaf biomass. A significant Shading × Species interaction in the two-way ANOVA, i.e. differential plasticity to shading of Convolvulus species, was found for petiole length, stem length, number of branches, leaf shape, and specific leaf area. Contrary to our hypothesis, tests of parallelism showed that, in general, the plasticity to shading of C. chilensis (the species of intermediate ecological breadth) was the greatest, and that of C. arvensis (the weed) and C. demissus (the species of narrow distribution) was similar. Issues of ecotype differentiation, in the case ofC. arvensis, and the role of life history traits are raised to explain the observed lack of association between ecological breadth and magnitude of phenotypic plasticity. © 2004 Elsevier SAS. All rights reserved.

Effect of temperature on development, growth and reproduction in the marine copepod Pseudocalanus newmani at satiating food condition

Post-embryonic development time, somatic growth, egg production rate, survival and sex ratio for the marine calanoid copepod Pseudocalanus newmani from the Pacific coast off southwestern Hokkaido were determined at five temperatures (3, 6, 10, 15 and 20°C) when a mixed algal diet was provided at satiating food condition (0.36 μg C ml -1 ) in the laboratory. At temperatures between 3 and 15°C, the development time from hatching to adult female increased exponentially with decreasing temperature, being 23.3, 33.1, 46.7 and 74.6 days at 15, 10, 6 and 3°C, respectively. Males developed into adults 2-5 days earlier than did the females. At the highest temperature of 20°C, both embryonic and post-embryonic development and egg production of P newmani were suppressed. This inhibitory effect of high temperature is consistent with the vertical distribution range and seasonal abundance cycle of this copepod in the field; it tends to avoid the warm surface layer (>15°C) and scarcely appears in the water column during summer and autumn. Body size of P newmani was not affected by temperature until C1, but increased with decreasing temperature after C2. The weight-specific growth rate (SGR) increased linearly with temperature (T) until 15°C, which is expressed as SGR = 0. 0095T + 0.0462 (r = 0.996). This growth pattern may also indicate high-temperature stress to this copepod, the general pattern of copepod growth being exponential. The weight-specific egg production rate (SER) also increased with temperature (SER = 0. 02T + 0.014, r = 0.99), below 15°C. The proportion of male offspring of P newmani that grew to adulthood was nearly 50% at 3 and 6°C, but decreased with increasing temperature at 10-15°C. This unequal sex ratio may be due to sex change during juvenile development under temperature control. These results suggest that temperature plays an important role in life history traits of P newmani through not only temperature- dependent growth and reproduction, but also through high-temperature inhibition and temperature- controlled sex ratio under sufficient food supply.