Role In Proton Transport Research Articles

Enhancing proton conduction by regulating proton carrier position in polyamide layer of forward osmosis membrane in osmotic microbial fuel cell

Osmotic microbial fuel cell (OsMFC) encounters the problem of slow transport of proton, which results in a pH imbalance between the anode and cathode, and then a decreased cell performance. Forward osmosis (FO) membrane plays a critical role in proton transport in OsMFC, but the proton transmembrane migration is greatly hindered by the absence of particular proton transfer unit in FO membrane. In this study, high proton conductive carrier sulfo (−SO3H) was imported in the polyamide (PA) layer of FO membrane. The results demonstrated that the position of sulfo on benzene ring in PA polymer chain had a significant effect on proton migration and further the OsMFC property. As sulfo is in the ortho and para of the amino group on benzene ring, the optimal FO-1 membrane was acquired. It indicated that the OsMFC loaded with FO-1 membrane completed 88.31 % increase of water extraction, 50.72 % promotion of maximum power density and 6.02 % enhancement of chemical oxygen demand (COD) removal compared to those of the OsMFC with commercial FO membrane. The molecular dynamics simulation elucidated that the hydrogen bond and electrostatic interaction between atoms both played crucial roles in the proton-transfer process. This method of introducing proton carrier at molecular level aiming to alleviate the rising catholyte pH is economical and convenient for the potential scale-up applications of the OsMFC.

Wetting Transitions in the ATP Synthase C-Subunit Ring, a Large-Conductance Ion Channel

Apart from its known role in proton transport, the mammalian ATP synthase c-subunit ring (Fo domain) has been observed in recent electrophysiology experiments to form a high-conductance voltage-gated ion channel (∼1.5 nS). Yet, the ring's hydrophobic central lumen has been assumed to be dry, precluding a physical explanation for the observed conductance. We present an atomistic molecular dynamics simulation study of lumen wetting for mammalian and yeast c-subunit rings. Consistent with prior work, we find that the ∼12 Å diameter yeast ring remains dry on the several-hundred-nanosecond timescale of the simulations. In contrast, the narrower, ∼8 Å diameter, mammalian ring undergoes rapid (∼50 ns) liquid-vapor transitions, forming a transient but continuous water column across the lumen. Modifying the charge on the glutamate residues of the proton-transport pathway at the membrane-protein interface affects the duration and extent of lumen wetting, as do in silico mutations at various sites. The wetting variations are qualitatively consistent with electrophysiology experimental findings for wild-type and mutant forms of the mammalian c-subunit ring. We are encouraged to think that the simulations will serve as a valuable “computational microscope” for understanding how charge conductance can occur in the ATP synthase c-subunit ring. To determine the mechanism of wetting and its modulation, we are pursuing analysis of the surface hydrophobicity of the lumen lining and its response to the mutations. The simulation finding of reversible lumen wetting is supported by published work indicating c-subunit ring wetting in the intact ATP synthase. New experiments and published data additionally indicate that the Fo domain may exist at least partly dissociated from its F1 counterpart. ATP synthase c-subunit ring wetting, therefore, has implications with respect to osmotic swelling and the enigmatic mitochondrial permeability transition.

Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

This Review explores the dynamic behavior of water within nanopores and biological channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside selected structural and other experimental investigations. Structures of biological nanopores and channels are reviewed, emphasizing those high-resolution crystal structures, which reveal water molecules within the transmembrane pores, which can be used to aid the interpretation of simulation studies. Different levels of molecular simulations of water within nanopores are described, with a focus on molecular dynamics (MD). In particular, models of water for MD simulations are discussed in detail to provide an evaluation of their use in simulations of water in nanopores. Simulation studies of the behavior of water in idealized models of nanopores have revealed aspects of the organization and dynamics of nanoconfined water, including wetting/dewetting in narrow hydrophobic nanopores. A survey of simulation studies in a range of nonbiological nanopores is presented, including carbon nanotubes, synthetic nanopores, model peptide nanopores, track-etched nanopores in polymer membranes, and hydroxylated and functionalized nanoporous silica. These reveal a complex relationship between pore size/geometry, the nature of the pore lining, and rates of water transport. Wider nanopores with hydrophobic linings favor water flow whereas narrower hydrophobic pores may show dewetting. Simulation studies over the past decade of the behavior of water in a range of biological nanopores are described, including porins and β-barrel protein nanopores, aquaporins and related polar solute pores, and a number of different classes of ion channels. Water is shown to play a key role in proton transport in biological channels and in hydrophobic gating of ion channels. An overall picture emerges, whereby the behavior of water in a nanopore may be predicted as a function of its hydrophobicity and radius. This informs our understanding of the functions of diverse channel structures and will aid the design of novel nanopores. Thus, our current level of understanding allows for the design of a nanopore which promotes wetting over dewetting or vice versa. However, to design a novel nanopore, which enables fast, selective, and gated flow of water de novo would remain challenging, suggesting a need for further detailed simulations alongside experimental evaluation of more complex nanopore systems.

Mechanism of Sodium/Proton Antiport in NhaA

The transmembrane protein NhaA from Escherichia coli is a prototypical sodium/proton antiporter. It enables the bacterium to grow under high salt conditions while homologous proteins in eukaryotes are involved in pH and cell volume regulation. A number of acidic and basic residues have been shown to be essential for the transport of one sodium ion for two protons but the mechanistic details of their involvement have not been fully determined. Furthermore, the conformational changes involved in the transport mechanism were not known. We present an unpublished crystal structure of NhaA in the inward facing conformation and of the homolog NapA in the outward facing conformation [1]. Using modelling and computer simulations we show how NhaA can function according to the alternating access model, resulting in large relative domain motions that are incompatible with previous structural models for transport in NhaA. Our structure of NhaA contains a salt bridge between the two conserved residues Asp163 and Lys300. With the help of molecular dynamics simulations we critically examine competing models for the molecular mechanism of the stoichiometric transport of two protons for one sodium ion, including one in which Lys300 maintains an active role in proton transport.[1] Lee et al, Nature 501 (2013), 573.

Osteopetrosis Mutation R444L Causes Endoplasmic Reticulum Retention and Misprocessing of Vacuolar H+-ATPase a3 Subunit

Osteopetrosis is a genetic bone disease characterized by increased bone density and fragility. The R444L missense mutation in the human V-ATPase a3 subunit (TCIRG1) is one of several known mutations in a3 and other proteins that can cause this disease. The autosomal recessive R444L mutation results in a particularly malignant form of infantile osteopetrosis that is lethal in infancy, or early childhood. We have studied this mutation using the pMSCV retroviral vector system to integrate the cDNA construct for green fluorescent protein (GFP)-fused a3(R445L) mutant protein into the RAW 264.7 mouse osteoclast differentiation model. In comparison with wild-type a3, the mutant glycoprotein localized to the ER instead of lysosomes and its oligosaccharide moiety was misprocessed, suggesting inability of the core-glycosylated glycoprotein to traffic to the Golgi. Reduced steady-state expression of the mutant protein, in comparison with wild type, suggested that the former was being degraded, likely through the endoplasmic reticulum-associated degradation pathway. In differentiated osteoclasts, a3(R445L) was found to degrade at an increased rate over the course of osteoclastogenesis. Limited proteolysis studies suggested that the R445L mutation alters mouse a3 protein conformation. Together, these data suggest that Arg-445 plays a role in protein folding, or stability, and that infantile malignant osteopetrosis caused by the R444L mutation in the human V-ATPase a3 subunit is another member of the growing class of protein folding diseases. This may have implications for early-intervention treatment, using protein rescue strategies.

Definition of Membrane Topology and Identification of Residues Important for Transport in Subunit a of the Vacuolar ATPase

Subunit a of the vacuolar H(+)-ATPases plays an important role in proton transport. This membrane-integral 100-kDa subunit is thought to form or contribute to proton-conducting hemichannels that allow protons to gain access to and leave buried carboxyl groups on the proteolipid subunits (c, c', and c″) during proton translocation. We previously demonstrated that subunit a contains a large N-terminal cytoplasmic domain followed by a C-terminal domain containing eight transmembrane (TM) helices. TM7 contains a buried arginine residue (Arg-735) that is essential for proton transport and is located on a helical face that interacts with the proteolipid ring. To further define the topology of the C-terminal domain, the accessibility of 30 unique cysteine residues to the membrane-permeant reagent N-ethylmaleimide and the membrane-impermeant reagent polyethyleneglycol maleimide was determined. The results further define the borders of transmembrane segments in subunit a. To identify additional buried polar and charged residues important in proton transport, 25 sites were individually mutated to hydrophobic amino acids, and the effect on proton transport was determined. These and previous results identify a set of residues important for proton transport located on the cytoplasmic half of TM7 and TM8 and the lumenal half of TM3, TM4, and TM7. Based upon these data, we propose a tentative model in which the cytoplasmic hemichannel is located at the interface of TM7 and TM8 of subunit a and the proteolipid ring, whereas the lumenal hemichannel is located within subunit a at the interface of TM3, TM4, and TM7.

Mechanism of proton conductivity in polyvinyl alcohol-phenolsulfonic acid membranes from 1H and 13C NMR data

With line narrowing during magic angle spinning in solid-state NMR, molecular mobility and hydration in composite membranes based on polyvinyl alcohol (PVA) and phenol-2,4-disulfonic acid (PSA) were studied as functions of the ratio of the acidic and polymeric components, the degree of cross-linking in the polymeric matrix, and the moisture content. It is shown that at high relative humidity proton transport takes place by means of the network of hydrogen bonds, which are formed by the H+ counterions, sulfonate groups, and water molecules. At low moisture content, the hydroxyl groups in PVA play an active role in proton transport.

Acid/base equilibria in clusters and their role in proton exchange membranes: computational insight

We describe molecular orbital theory and ab initio molecular dynamics studies of acid/base equilibria of clusters AH:(H2O)n <==> A-: H+ (H2O)n in low hydration regime (n = 1-4), where AH is a model of perfluorinated sulfonic acids, RSO3H (R = CF3CF2), encountered in polymer electrolyte membranes for fuel cells. Free energy calculations on the neutral and ion pair structures for n=3 indicate that the two configurations are close in energy and are accessible in the fluctuation dynamics of proton transport. For n=1, 2 the only relevant configuration is the neutral form. This was verified through ab initio metadynamics simulations. These findings suggest that bases are directly involved in the proton transport at low, n=3, hydration level, but not at lower hydration levels, n < or =2. In addition, the gas phase proton affinity of the model sulfonic acid H was found to be comparable to the proton affinity of water. The free energy profile for proton exchange between a protonated acid-water cluster configuration and a neutral acid-hydronium ion cluster configuration showed that such configurations are nearly isoenergetic. Thus, protonated acids can also play a role in proton transport under low hydration conditions and under high concentration of protons.

Distinct Expression Patterns of Different Subunit Isoforms of the V-ATPase in the Rat Epididymis1

In the epididymis and vas deferens, the vacuolar H(+)ATPase (V-ATPase), located in the apical pole of narrow and clear cells, is required to establish an acidic luminal pH. Low pH is important for the maturation of sperm and their storage in a quiescent state. The V-ATPase also participates in the acidification of intracellular organelles. The V-ATPase contains many subunits, and several of these subunits have multiple isoforms. So far, only subunits ATP6V1B1, ATP6V1B2, and ATP6V1E2, previously identified as B1, B2, and E subunits, have been described in the rat epididymis. Here, we report the localization of V-ATPase subunit isoforms ATP6V1A, ATP6V1C1, ATP6V1C2, ATP6V1G1, ATP6V1G3, ATP6V0A1, ATP6V0A2, ATP6V0A4, ATP6V0D1, and ATP6V0D2, previously labeled A, C1, C2, G1, G3, a1, a2, a4, d1, and d2, in epithelial cells of the rat epididymis and vas deferens. Narrow and clear cells showed a strong apical staining for all subunits, except the ATP6V0A2 isoform. Subunits ATP6V0A2 and ATP6V1A were detected in intracellular structures closely associated but not identical to the TGN of principal cells and narrow/clear cells, and subunit ATP6V0D1 was strongly expressed in the apical membrane of principal cells in the apparent absence of other V-ATPase subunits. In conclusion, more than one isoform of subunits ATP6V1C, ATP6V1G, ATP6V0A, and ATP6V0D of the V-ATPase are present in the epididymal and vas deferens epithelium. Our results confirm that narrow and clear cells are well fit for active proton secretion. In addition, the diverse functions of the V-ATPase may be established through the utilization of specific subunit isoforms. In principal cells, the ATP6V0D1 isoform may have a physiological function that is distinct from its role in proton transport via the V-ATPase complex.

Site-directed Mutagenesis of the 100-kDa Subunit (Vph1p) of the Yeast Vacuolar (H+)-ATPase

Vacuolar (H+)-ATPases (V-ATPases) are multisubunit complexes responsible for acidification of intracellular compartments in eukaryotic cells. V-ATPases possess a subunit of approximate molecular mass 100 kDa of unknown function that is composed of an amino-terminal hydrophilic domain and a carboxyl-terminal hydrophobic domain. To test whether the 100-kDa subunit plays a role in proton transport, site-directed mutagenesis of the VPH1 gene, which is one of two genes that encodes this subunit in yeast, has been carried out in a strain lacking both endogenous genes. Ten charged and twelve polar residues located in the seven putative transmembrane helices in the COOH-terminal domain of the molecule were individually changed, and the effects on proton transport, ATPase activity, and assembly of the yeast V-ATPase were measured. Two mutations (R735L and Q634L) in transmembrane helix 6 and at the border of transmembrane helix 5, respectively, showed greatly reduced levels of the 100-kDa subunit in the vacuolar membrane, suggesting that these mutations affected stability of the 100-kDa subunit. Two mutations, D425N and K538A, in transmembrane helix 1 and at the border of transmembrane helix 3, respectively, showed reduced assembly of the V-ATPase, with the D425N mutation also reducing the activity of V-ATPase complexes that did assemble. Two mutations, H743A and K593A, in transmembrane helix 6 and at the border of transmembrane helix 4, respectively, have significantly greater effects on activity than on assembly, with proton transport and ATPase activity inhibited 40-60%. One mutation, E789Q, in transmembrane helix 7, virtually completely abolished proton transport and ATPase activity while having no effect on assembly. These results suggest that the 100-kDa subunit may be required for activity as well as assembly of the V-ATPase complex and that several charged residues in the last four putative transmembrane helices of this subunit may play a role in proton transport.

Intracellular pH regulation and proton transport by rabbit renal medullary collecting duct cells. Role of plasma membrane proton adenosine triphosphatase.

Proton secretion in the renal medullary collecting duct is thought to occur via a luminal proton-ATPase. In order to determine what mechanism(s) participate in proton transport across medullary collecting duct (MCD) cells membranes, intracellular pH (pHi) regulation and proton extrusion rates were measured in freshly prepared suspensions of rabbit outer MCD cells. Cells were separated by protease digestion and purified by Ficoll gradient centrifugation. pHi was estimated fluorometrically using the entrapped intracytoplasmic pH indicator, 6-carboxyfluorescein. Proton extrusion rates were measured using a pH stat. The resting pHi of MCD cells was 7.19 +/- 0.05 (SE) in a nonbicarbonate medium of pH 7.30. When cells were acidified by exposure to acetate salts or by abrupt withdrawal of ammonium chloride, they exhibited pHi recovery to the resting pHi over a 5-min time-course. Depletion of greater than 95% of cellular ATP content by poisoning with KCN in the absence of glucose inhibited pHi recovery. ATP depletion inhibited proton extrusion from MCD cells. Treatment with N-ethylmaleimide also inhibited pHi recovery. In addition, cellular ATP content was dependent on transmembrane pH gradients, suggesting that proton extrusion stimulated ATP hydrolysis. Neither removal of extracellular sodium nor addition of amiloride inhibited pHi recovery. These results provide direct evidence that a plasma membrane proton-ATPase, but not a Na+/H+ exchanger, plays a role in proton transport and pHi regulation in rabbit MCD.