Because of the openness and complexity of the mobile network environment, the problem of network security is becoming more and more serious, and the mobile network teaching system is also facing the risk of intrusion and attack. Therefore, this paper designs an intrusion detection system for mobile network teaching system. The system uses machine learning and data mining technology to analyze and process the data flow of the mobile network teaching system, extract the characteristics of the data flow, build the intrusion detection model, and realize the intrusion detection of the mobile network teaching system. The research results of this paper show that the intrusion detection system of mobile network teaching system based on intelligent algorithm can effectively detect the intrusion behavior of mobile network teaching system, with high detection accuracy and low false alarm rate, which provides a guarantee for the security and stability of mobile network teaching system.