Uncertainty in the global carbon (C) budget has been reduced for most stocks, though it remains incomplete by not considering aquatic and transitional zone carbon stocks. A key issue preventing such complete accounting is a lack of available C data within these aquatic and aquatic-terrestrial transitional ecosystems. Concurrently, quantifiable results produced by restoration practices that explicitly target C stock accumulation and sequestration remain inconsistent or undocumented. To support a more complete carbon budget and identify impacts on C stock accumulation from restoration treatment actions, we investigated C stock values in a Mediterranean-montane riparian floodplain system in California, USA. We quantified the C stock in aboveground biomass, large wood, and litter in addition to the C and total nitrogen in the upper soil profile (5 cm) across 23 unique restoration treatments and remnant old-growth forests. Treatments span 40 years of restoration actions along seven river kilometers of the Cosumnes River, and include process-based (limited intervention), assisted (horticultural planting and other intensive restoration activities), hybrid (a combination of process and assisted actions), and remnant (old-growth forests that were not created with restoration actions) sites. Total C values measured up to 1100 Mg ha−1 and averaged 129 Mg ha−1 with biomass contributing the most to individual plot measurements. From 2012 to 2020, biomass C stock measurements showed an average 32 Mg ha−1 increase across all treatments, though treatment specific values varied. While remnant forest plots held the highest average C values across all stocks (336 Mg ha−1), C values of different stocks varied across treatment type. Process-based restoration treatments held more average biomass C (120 Mg ha−1) than hybrid (23 Mg ha−1) or assisted restoration treatments (50 Mg ha−1), while assisted restoration treatments held more average total C in soil and litter (58 Mg ha−1) than hybrid (35 Mg ha−1) and process-based restoration treatments (37 Mg ha−1). Regardless of treatment type, time was a significant factor for all C stock values. These findings support a more inclusive global carbon budget and provide valuable insight into restoration treatment actions that support C stock accumulation.