Understanding the water use patterns of different tree species and their adaptability to drought is urgently needed due to global warming. In this study, we investigated the seasonal water uptake patterns of Pinus tabulaeformis and Picea wilsonii on the eastern Tibetan Plateau using stable isotope methods. In addition, tree ring width data was used to evaluate the radial growth resistance of the two species to drought in 2022. The focus was on identifying species differences in water uptake patterns during drought spells and radial growth resistance to drought. The results showed that although Pinus tabulaeformis could increase water uptake from deeper soil layers during drought spells, the radial growth resistance to drought was significantly lower (p < 0.001) than that of Picea wilsonii due to the limited water content in the deep soil layers. In contrast, Picea wilsonii had higher resistance and adaptations to drought based on rapid access to water resources from seasonal precipitation with denser fine roots. Overall, shifting water sources to deeper soils during drought spells was not always effective in alleviating drought stress, but the root structure and deep soil water availability were the key factors influencing the drought resistance of trees. The findings had significant implications for decision-making on the species suitability of plantation projects under future climatic change.