The main goal of this study was to determine how much variation in macrophyte richness and composition is explained by wetland area, altitude, water conductivity, and nitrate and total phosphorus concentrations in wetlands in southern Brazil, and to compare these variations in two wetland subsystems (palustrine and lacustrine). A total of 126 wetlands were sampled distributed in two subsystems: 87 palustrine and 39 lacustrine wetlands. A total of 153 species of aquatic macrophytes was found in wetlands of southern Brazil and the mean number of macrophyte species per site was 8.7 (range 1–23). From the variables tested, the altitude and area were the only predictor of macrophyte richness and explained 23.1% of variation in richness. The two first axes generated by CCA explained only 4.4% of the variation in the aquatic macrophytes distribution. The macrophyte richness was similar across lacustrine and palustrine subsystems. While altitude, area and conductivity explained 33.2% of variation in macrophyte richness in the palustrine subsystem, none of the variables were associated with macrophyte richness in the studied lacustrine wetlands.
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