Rice Roots Research Articles

Biochar Application Combined with Water-Saving Irrigation Enhances Rice Root Growth and Nitrogen Utilization in Paddy Fields

To improve nitrogen use efficiency (NUE) during rice cultivation, it is essential to comprehend the morphological and physiological traits of rice roots. However, in high-fertility black soil regions of Northeast China, the effects of combining biochar application with water-saving irrigation (WSI) conditions on rice root development and nitrogen utilization are still unknown. To address this knowledge gap, a combination of field experiments and 15N tracer micro-area investigations was conducted in this study. Four treatments were implemented: (i) controlled irrigation without biochar application (CB0); (ii) controlled irrigation with 2.5 t ha−1 biochar application (CB1); (iii) controlled irrigation with 12.5 t ha−1 biochar application (CB2); and (iv) controlled irrigation with 25 t ha–1 biochar application (CB3). Flooded irrigation conditions without biochar treatment (FB0) were used as the control. The primary objective of this research was to identify the mechanisms by which combined WSI conditions and biochar application affect rice root development and nitrogen utilization. Biochar application enhanced rice root morphological and physiological characteristics. Optimal biochar application increased the longest root length (RL), root volume (RV), root fresh weight (RFW), root active absorption area, root bleeding intensity, and root activity (RA) of rice while also optimizing the root–shoot ratio and facilitating nitrogen absorption by roots. These changes in root morphological and physiological characteristics facilitated the absorption of fertilizer-15N and soil nitrogen by rice roots, ultimately leading to improvements in rice yields and NUEs. Notably, the rice yields, NUE, nitrogen agronomic efficiency (NAE), and nitrogen partial factor productivity (NPFP) of CB2 plants were 16.45%, 39.42%, 24.48%, and 16.45% higher than those of FB0 plants, respectively. These results highlight the effectiveness of biochar application as a strategy to ensure food security and enhance NUE under WSI conditions. Furthermore, this study suggests that the recommended optimal application amount of biochar for the black soil area of Northeast China is 12.5 t ha−1.

Rice rhizospheric effects and mechanism on soil cadmium bioavailability during silicon application

Exogenous Si mitigates the mobility and bioavailability of Cd in the soil, thereby alleviating its phytotoxicity. This study focused on specific Si-induced immobilisation effects within the rhizosphere (S1), near-rhizosphere (S2), and far-rhizosphere (S3) zones. Based on the rhizobox experiment, we found that applying Si significantly elevated soil pH, and the variation amplitudes in the S3 soil exceeded those in the S1 and S2 soils. Si-induced changes in the rhizosphere also included enhanced dissolved organic carbon and diminished soil Eh, particularly in the Si400 treatment. Meanwhile, the introduction of Si greatly enhanced the Fe2+ and Mn2+ concentrations in the S1 soil, but reduced them in the S2 soil. The rhizosphere effect of Si which enriched Fe2+ and Mn2+ subsequently promoted the formation of Fe and Mn oxides/hydro-oxides near the rice roots. Consequently, the addition of Si significantly reduced the available Cd concentrations in S1, surpassing the reductions in S2 and S3. Moreover, Si-treated rice exhibited increased Fe plaque generation and fixation on soil Cd, resulting in decreased Cd concentrations in rice tissues, accompanied by reduced Cd translocation from roots to shoots and shoots to grains. Structural equation modelling further highlighted that Si is essential in Cd availability in S1 and Fe plaque development, ultimately mitigating Cd accumulation in rice. Si-treated rice also exhibited higher biomass and grain yield than those of control groups. These findings provide valuable insights into Si-based strategies for addressing the Cd contamination of agricultural soils.

Root hairs facilitate rice root penetration into compacted layers

Compacted soil layers adversely affect rooting depth and access to deeper nutrient and water resources, thereby impacting climate resilience of crop production and global food security. Root hair plays well-known roles in facilitating water and nutrient acquisition. Here, we report that root hair also contributes to root penetration into compacted layers. We demonstrate that longer root hair, induced by elevated auxin response during a root compaction response, improves the ability of rice roots to penetrate harder layers. This compaction-induced auxin response in the root hair zone is dependent on the root apex-expressed auxin synthesis gene OsYUCCA8 (OsYUC8), which is induced by compaction stress. This auxin source for root hair elongation relies on the auxin influx carrier AUXIN RESISTANT 1 (OsAUX1), mobilizing this signal from the root apex to the root hair zone. Mutants disrupting OsYUC8 and OsAUX1 genes exhibit shorter root hairs and weaker penetration ability into harder layers compared with wild type (WT). Root-hair-specific mutants phenocopy these auxin-signaling mutants, as they also exhibit an attenuated root penetration ability. We conclude that compaction stress upregulates OsYUC8-mediated auxin biosynthesis in the root apex, which is subsequently mobilized to the root hair zone by OsAUX1, where auxin promotes root hair elongation, improving anchorage of root tips to their surrounding soil environment and aiding their penetration ability into harder layers.

Transcriptomic and Lipidomic Analysis Reveals Complex Regulation Mechanisms Underlying Rice Roots' Response to Salt Stress.

Rice (Oryza sativa L.), a crucial food crop that sustains over half the world's population, is often hindered by salt stress during various growth stages, ultimately causing a decrease in yield. However, the specific mechanism of rice roots' response to salt stress remains largely unknown. In this study, transcriptomics and lipidomics were used to analyze the changes in the lipid metabolism and gene expression profiles of rice roots in response to salt stress. The results showed that salt stress significantly inhibited rice roots' growth and increased the roots' MDA content. Furthermore, 1286 differentially expressed genes including 526 upregulated and 760 downregulated, were identified as responding to salt stress in rice roots. The lipidomic analysis revealed that the composition and unsaturation of membrane lipids were significantly altered. In total, 249 lipid molecules were differentially accumulated in rice roots as a response to salt stress. And most of the major phospholipids, such as phosphatidic acid (PA), phosphatidylcholine (PC), and phosphatidylserine (PS), as well as major sphingolipids including ceramide (Cer), phytoceramide (CerP), monohexose ceramide (Hex1Cer), and sphingosine (SPH), were significantly increased, while the triglyceride (TG) molecules decreased. These results suggested that rice roots mitigate salt stress by altering the fluidity and integrity of cell membranes. This study enhances our comprehension of salt stress, offering valuable insights into changes in the lipids and adaptive lipid remodeling in rice's response to salt stress.

Biocompatible silver nanoparticles as nanopriming mediators for improved rice germination and root growth: A transcriptomic perspective

Silver nanoparticles (AgNPs) have an important role in agriculture since they have several applications that are essential for the enhanced yield of crops. Furthermore, they act as nano-pesticides, delivering a proper dose to the target plants without releasing unwanted pesticides into the environment. Upholding the sustainable nano agriculture, biocompatible silver nanoparticles were synthesised utilising Piper colubrinum Link. leaf extract. Different characterization methods (TEM, EDX and XRD) revealed that AgNPs were successfully formed and coated with phytochemicals that constituted the plant extract. Enhanced root development during the early post-germination phase is crucial for the success of direct seeding in rice cultivation. The effects of AgNPs on the growth of plant roots are poorly understood. In this work, Piper colubrinum mediated AgNPs-primed Oryza sativa L. seeds, at various concentrations (0, 50, 80, 100, and 150 mg/L), exceeded typical hydro-primed controls in terms of germination and seedling growth. Oryza sativa L. treated with AgNPs at a concentration of 80 mg/L enhanced root elongation. Additionally, exposure to AgNPs significantly enhanced the content of chlorophyll. The Kyoto Encyclopedia of Genes and Genomes (KEGG) study revealed that the identified pathways like Aromatic amino acid biosynthesis genes, Fatty acid biosynthesis genes, and Carotenoid biosynthesis genes were the most enriched. Some of the genes associated with root growth and development like glucosyltransferases, Glutathione pathway genes, Calcium-ion binding pathway genes, Peroxidase precursor and Nitrilase-associated protein were up regulated. Overall, AgNPs treatments promoted seed germination, growth, chlorophyll content and gene expression patterns, which might be attributable to the beneficial effects of AgNPs on rice.

Characterizing Microplastic Pollution and Microbial Community Status in Rice Paddy Soils Across Varied Environmental Settings in Songjiang, Shanghai: An Analysis of Morpho-Chemical Characteristics

Microplastic (MP) pollution poses a huge threat to rice fields, but the distribution characteristics of MPs in farmlands of different types of areas are still uncertain. In this work, 24 samples from 12 rice fields of four different land-use types (Factory, highway, greenhouse/mulching and normal fields) were collected from Songjiang, Shanghai. From our selected sites, it was found that MP abundances were in the range of 233.33- 173.33 particles/kg in rhizosphere and bulk soil. MP distribution results showed that over 40% of particles were less than 1 mm and MP sizes ranging between 1 and 5 mm represented the greatest proportion. According to our study, MP in rhizosphere soil has the highest abundance (233.33 ± 57.73 particles/kg) than bulk soil. The particle shape classified as fragment (with edges and angular) was the most frequent shape found near factory areas, with an abundance of approximately 37.10%. Copolymers of polypropylene- polyethylene (PP/PE) at 24.30% were the most abundant polymers in rice lands in both bulk and rhizosphere soils; following is polystyrene (PS) at 21.40%, respectively. Most of the particles found in soils were white. Statistical analyses showed that fields near factories and fields where plastic mulching (mulch film and greenhouse crops) was used had a significantly higher particle abundance for bulk and rhizosphere soils, hence identifying plastic mulching as a major contributor to MP pollution in paddy soils. In industrial areas, MP can also be generated by released waste or by air. Microbial studies in rice roots, rhizosphere soil, and bulk soil show variation in the abundance of different species and genera. The dominant bacterial phyla in rice roots are Proteobacteria, Actinobacteriota, Firmicutes, and Bacteroidota. These microbes have been observed and can be impacted by the presence of MPs. Rhizosphere soil and bulk soil have an abundance of Chloroflexi, Actinobacteriota, Proteobacteria, Firmicutes, and Acidobacteriota. The specific effects on the microbial community structure depend on factors like MP type, concentration, and exposure duration. As our study was field-based, the significant effect of a specific type or concentration of MP was difficult to identify. Variation analyses of MP characteristics revealed that paddy lands were more likely to contain fragment shapes and large MP particles (1-5 mm). Also, rhizosphere soils were likely to contain fragment shapes and pony-size MPs (0.02-0.2 mm). Differences among rice fields may depend on various reasons, such as using slow- release fertilizers, mulching plastic application, irrigation, atmospheric fallout, etc. This study provides some proper evidence about the characteristics of MP pollution in rice fields of Songjiang and explores some probable conditions and predominant MP sources in rice fields.

OsCIPK2 mediated rice root microorganisms and metabolites to improve plant nitrogen uptake

Crop roots are colonized by large numbers of microorganisms, collectively known as the root-microbiome, which modulate plant growth, development and contribute to elemental nutrient uptake. In conditions of nitrogen limitation, the over-expressed Calcineurin B-like interacting protein kinase 2 (OsCIPK2) gene with root-specific promoter (RC) has been shown to enhance growth and nitrogen uptake in rice. Analysis of root-associated bacteria through high-throughput sequencing revealed that OsCIPK2 has a significant impact on the diversity of the root microbial community under low nitrogen stress. The quantification of nifH gene expression demonstrated a significant enhancement in nitrogen-fixing capabilities in the roots of RC transgenetic rice. Synthetic microbial communities (SynCom) consisting of six nitrogen-fixing bacterial strains were observed to be enriched in the roots of RC, leading to a substantial improvement in rice growth and nitrogen uptake in nitrogen-deficient soils. Forty and twenty-three metabolites exhibiting differential abundance were identified in the roots and rhizosphere soils of RC transgenic rice compared to wild-type (WT) rice. These findings suggest that OSCIPK2 plays a role in restructuring the microbial community in the roots through the regulation of metabolite synthesis and secretion. Further experiments involving the exogenous addition of citric acid revealed that an optimal concentration of this compound facilitated the growth of nitrogen-fixing bacteria and substantially augmented their population in the soil, highlighting the importance of citric acid in promoting nitrogen fixation under conditions of low nitrogen availability. These findings suggest that OsCIPK2 plays a role in enhancing nitrogen uptake by rice plants from the soil by influencing the assembly of root microbial communities, thereby offering valuable insights for enhancing nitrogen utilization in rice cultivation.

Effect of Cd(II) adsorption onto rice roots on its uptake by different indica and japonica rice varieties and toxicity effect of Cd(II) under acidic conditions.

The rapid increase in soil acidity coupled with the deleterious effects of cadmium (Cd) toxicity had led to a decline in worldwide agricultural production. Rice absorbs and accumulates Cd(II) from polluted paddy soils, increasing human health risks throughout the food chain. A 35-day hydroponic experiment with four japonica and four indica (two each of them tolerant and sensitive cultivars) was conducted in this study to investigate the adsorption and absorption of Cd(II) by rice roots as related with surface chemical properties of the roots. The results showed that the three chemical forms of exchangeable, complexed, and precipitated Cd(II) increased with the increase in Cd(II) concentration for all rice cultivars. The roots of indica rice cultivars carried more negative charges and had greater functional groups and thus adsorbed more exchangeable and complexed Cd(II) than those of japonica rice cultivars. This led to more absorption of Cd(II) by the roots and greater toxicity of Cd(II) to the roots of indica rice cultivars and more inhibition of Cd(II) stress on the growth of the roots and whole plants of indica rice cultivars compared with japonica rice cultivars, which was one of the main reasons for more declines in the biomass and length of indica rice roots and shoots than japonica rice cultivars. Cd(II) stress showed more toxicity to the sensitive rice cultivars and thus greater inhibition on the growth of the cultivars due to more exchangeable and complexed Cd(II) adsorbed by their roots induced by more negative charges and functional groups on the roots compared with tolerant rice cultivar for both indica and japonica, which resulted in greater decreases in the biomass and length of roots and shoots as well as chlorophyll contents of the sensitive cultivars than the tolerant cultivars. The roots of sensitive rice cultivars also absorbed more Cd(II) than tolerant rice cultivars due to the same reasons as above. These findings will provide useful references for the safe utilization and health risk prevention of Cd-contaminated paddy fields.

The Oryza sativa transcriptome responds spatiotemporally to polystyrene nanoplastic stress

Nanoplastic represents an emerging abiotic stress facing modern agriculture, impacting global crop production. However, the molecular response of crop plants to this stress remains poorly understood at a spatiotemporal resolution. We therefore used RNA sequencing to profile the transcriptome expressed in rice (Oryza sativa) root and leaf organs at 1, 2, 4, and 8 d post exposure with nanoplastic. We revealed a striking similarity between the rice biomass dynamics in aboveground parts to that in belowground parts during nanoplastic stress, but transcriptome did not. At the global transcriptomic level, a total of 2332 differentially expressed genes were identified, with the majority being spatiotemporal specific, reflecting that nanoplastics predominantly regulate three processes in rice seedlings: (1) down-regulation of chlorophyll biosynthesis, photosynthesis, and starch, sucrose and nitrogen metabolism, (2) activation of defense responses such as brassinosteroid biosynthesis and phenylpropanoid biosynthesis, and (3) modulation of jasmonic acid and cytokinin signaling pathways by transcription factors. Notably, the genes involved in plant-pathogen interaction were shown to be successively modulated by both root and leaf organs, particularly plant disease defense genes (OsWRKY24, OsWRKY53, Os4CL3, OsPAL4, and MPK5), possibly indicating that nanoplastics affect rice growth indirectly through other biota. Finally, we associated biomass phenotypes with the temporal reprogramming of rice transcriptome by weighted gene co-expression network analysis, noting a significantly correlation with photosynthesis, carbon metabolism, and phenylpropanoid biosynthesis that may reflect the mechanisms of biomass reduction. Functional analysis further identified PsbY, MYB, cytochrome P450, and AP2/ERF as hub genes governing these pathways. Overall, our work provides the understanding of molecular mechanisms of rice in response to nanoplastics, which in turn suggests how rice might behave in a nanoplastic pollution scenario.

Biochemical mechanisms underlying iron plaque-mediated phosphorus accumulation and uptake in rice roots

The iron oxyhydroxides of iron plaque on the surface of rice root are crucial for the uptake of nutrition elements, especially phosphorus (P), but the effects of iron oxyhydroxides of iron plaque on the accumulation and uptake of P remain largely unknown. In this study, we investigated the regulatory mechanism of iron plaque on P uptake in rice via hydroponics of whole plant and simulation of iron oxyhydroxides-coated suspension cells in rice. The hydroponic experiment results showed that the presence of iron plaque increased the P content in rice shoots. The simulation experiment results further confirmed that after iron plaque coating, the P contents in the whole cell and on the cell wall were significantly increased from 5.16 mg/g and 2.73 mg/g to 8.85 mg/g and 5.27 mg/g, respectively. In addition, our data also showed that iron plaque coating led to an increase in cell surface potentials from −380 ± 40 mV to −200 ± 30 mV, thus promoting the adsorption of more P. Taken together, this study demonstrated that the iron plaque coating increased the surface potential of the cells, thus enhancing cellular P enrichment, eventually promoting P efficient adsorption in rice. Deciphering these regulatory mechanisms provide an insight into P biogeochemical cycling at the soil-plant interface and offer theoretical basis and practical references for the improvement of P bioavailability in rice production.

Rice transcription factor OsWRKY37 positively regulates flowering time and grain fertility under copper deficiency.

Efficient uptake, translocation, and distribution of Cu to rice (Oryza sativa) spikelets is crucial for flowering and yield production. However, the regulatory factors involved in this process remain unidentified. In this study, we isolated a WRKY transcription factor gene induced by Cu deficiency, OsWRKY37, and characterized its regulatory role in Cu uptake and transport in rice. OsWRKY37 was highly expressed in rice roots, nodes, leaf vascular bundles, and anthers. Overexpression of OsWRKY37 promoted the uptake and root-to-shoot translocation of Cu in rice under -Cu condition but not under +Cu condition. While mutation of OsWRKY37 significantly decreased Cu concentrations in the stamen, the root-to-shoot translocation and distribution ratio in brown rice affected pollen development, delayed flowering time, decreased fertility, and reduced grain yield under -Cu condition. yeast one-hybrid, transient co-expression and EMSAs, together with in situ RT-PCR and RT-qPCR analysis, showed that OsWRKY37 could directly bind to the upstream promoter region of OsCOPT6 (copper transporter) and OsYSL16 (yellow stripe-like protein) and positively activate their expression levels. Analyses of oscopt6 mutants further validated its important role in Cu uptake in rice. Our study demonstrated that OsWRKY37 acts as a positive regulator involved in the uptake, root-to-shoot translocation, and distribution of Cu through activating the expression of OsCOPT6 and OsYSL16, which is important for pollen development, flowering, fertility, and grain yield in rice under Cu deficient conditions. Our results provide a genetic strategy for improving rice yield under Cu deficient condition.

Biosynthetic selenium nanoparticles (Bio-SeNPs) mitigate the toxicity of antimony (Sb) in rice (Oryza sativa L.) by limiting Sb uptake, improving antioxidant defense system and regulating stress-related gene expression

Nanotechnology offers a promising and innovative approach to mitigate biotic and abiotic stress in crop production. In this study, the beneficial role and potential detoxification mechanism of biogenic selenium nanoparticles (Bio-SeNPs) prepared from Psidium guajava extracts in alleviating antimony (Sb) toxicity in rice seedlings (Oryza sativa L.) were investigated. The results revealed that exogenous addition of Bio-SeNPs (0.05 g/L) into the hydroponic-cultured system led to a substantial enhancement in rice shoot height (73.3%), shoot fresh weight (38.7%) and dry weight (28.8%) under 50 μM Sb(III) stress conditions. Compared to Sb exposure alone, hydroponic application of Bio-SeNPs also greatly promoted rice photosynthesis, improved cell viability and membrane integrity, reduced reactive oxygen species (ROS) levels, and increased antioxidant activities. Meanwhile, exogenous Bio-SeNPs application significantly lowered the Sb accumulation in rice roots (77.1%) and shoots (35.1%), and reduced its root to shoot translocation (55.3%). Additionally, Bio-SeNPs addition were found to modulate the subcellular distribution of Sb and the expression of genes associated with Sb detoxification in rice, such as OsCuZnSOD2, OsCATA, OsGSH1, OsABCC1, and OsWAK11. Overall, our findings highlight the great potential of Bio-SeNPs as a promising alternative for reducing Sb accumulation in crop plants and boosting crop production under Sb stress conditions.

Layered Double Hydroxides Reduce the Availability of Cadmium and Lead in Soil and the Content of Cadmium and Lead in Grain

ABSTRACT Layered double hydroxides (LDHs) have excellent immobilization effects on heavy metals (HMs) in water and soil. For the first time in Hunan province, the immobilization effect of Ca-Al LDH (SR-02-02) and Mg-Al LDH (SR-02-03) for the remediation of Cd and Pb was examined in contaminated soils. With treatments of SR-02-02 at 3000 kg/ha(L2–3), the immobilization effect of available Cd and Pb was 54.74% and 20.85%; with treatments of SR-02-03 at 3000 kg/ha(L3–3), the immobilization effect of available Cd and Pb was 68.02% and 26.70%, which showed that Cd, and Pb were gradually solidified into stable oxidizable and residual state. Less HMs were absorbed by rice as a result of the immobilization effect of SR-02-02 and SR-02-03, and the concentration of Cd and Pb in the root, stem, husk, and grain of rice were also significantly reduced. In particular, under the treatment of L2–3, the content of Cd and Pb in grain decreased by 69.13% and 72.67%, respectively; under the treatment of L3–3, the content of Cd and Pb in grain decreased by 80.76% and 100%, respectively. This was because LDHs materials reacted with HMs to form Cd-OH, Pb-OH, CdAl-LDH, and Ca/Mg-O-Pb etc. which reduced the availability of HMs. In conclusion, LDHs material is a promising material for the synergistic remediation of Cd and Pb contaminated soil.

Seed morphology characterization and salinity effects on two popular rice (Oryza sativa L.) varieties of Nagaland

Salinity is one of the significant problems in rice production as it limits its growth and development. Salinity can occur through natural processes due to weathering and human intervention, such as irrigation. The present study reports two different rice varieties, 'Makrilha' and 'Thevur' which are categorized as very long (< 7.50 mm) and slender in shape (< 3.0 mm) and subjected to different salt treatments (0 mM, 100 mM, 200 mM, and 300 mM NaCl solutions) and their germination responses, such as germination percentage (GP), germination index (GI), mean germination time (MGT), vigor index (VI), root and shoot length. The study concluded that Makrilha has a higher GP (88.33%) as compared to Thevur (63%) at 200 mM NaCl solution. Both the rice showed 100% germination in the control 0 mM and 100 mM salt solutions, and no germination was recorded in the 300 mM NaCl solution. GI was recorded at its maximum in Makrilha as compared to Thevur. MGT and VI were more concentrated in Thevur than Makrilha. There was a significant difference in GI, VI, root, and shoot length (P < 0.05) as salinity increased for both rices. There was no significant difference in GP (P = 0.122) and MGT (P = 0.088). The study also found a positive correlation between GI and GP. MGT is negatively correlated with GP and GI. VI is positively correlated with GP, and GI is negatively correlated with MGT. Root and shoot length are positively correlated with GP, GI, and VI but negatively correlated with MGT for both rice varieties. The rice root and shoot length are affected as salt concentration increases and are statistically significant (root P = 0.012, shoot P = 0.001). Salt is used to control weeds in almost every part of Nagaland. Thus, the effect of salt applications needs to be studied in rice. Based on the data obtained for germination parameters such as GP, GI, VI, MGT, root and shoot length, 'Makrilha' tends to show more tolerance towards salinity as compared to 'Thevur' under controlled environmental conditions. Thus, this study can provide insight into selecting rice with a higher salt tolerance for cultivation.

Cadmium-resistant bacterium Ralstonia sp. YDR alleviated Cd toxicity in rice seedlings by enhancing antioxidant defense and inhibiting Cd2+ influx and H+ efflux

Cadmium (Cd) accumulation in rice (Oryza sativa L.) and its potential risks for human health have attracted great attention. Several Cd-resistant bacteria can promote plant growth and alleviate Cd toxicity to rice, but how they regulate Cd2+ flux in rice roots is still poorly understood. Here, a new Cd-resistant endophytic bacterium Ralstonia sp. YDR was isolated and used to evaluate its role in reducing rice Cd accumulation. Ralstonia sp. YDR tolerated 80 mg L−1 Cd and removed amounts of Cd via bio-adsorption and bio-absorption. Ralstonia sp. YDR also harbored good alkalizing ability and exhibited typical plant growth-promoting characteristics. Hydroponic experiment showed that inoculation with Ralstonia sp. YDR not only significantly promoted rice growth but also decreased rice Cd by 14.4–41.3%. Further analyses verified the involvement of Ralstonia sp. YDR in increasing the activities of catalase, glutathione, peroxidase, and superoxide dismutase by 27.7–77.3%, 1.7–57.6%, 57.4–100.8%, and 5.31–60.2%, and decreasing the activity of malonaldehyde by up to 56% in rice seedlings as compared with control. Moreover, a significant reduction in Cd2+ influx and H+ efflux occurred in rice roots after inoculating with Ralstonia sp. YDR. Collectively, bacterial adsorption and absorption of Cd, bacteria-aided antioxidation, and bacterial regulation of Cd2+ and H+ fluxes all contributed to a low Cd accumulation in rice. Our study provides new clues to better understand microbial mechanisms underlying the low Cd accumulation in rice plants, which helps to enhance the production of low Cd rice in agricultural practice.

Mechanisms of chloride to promote the uptake and accumulation of cadmium in rice (Oryza sativa L.)

Cadmium (Cd) contamination in rice ecosystems posed a critical challenge to global food security and environmental health. This study aimed to unveil the key mechanisms trough hydroponic experiments by which chloride (Cl−) promoted the absorption and accumulation of cadmium (Cd) in rice plants. The findings elucidated that the addition of Cl− increased Cd uptake by rice roots (5.1 % ∼ 61 %), acting both directly by enhancing root morphology and indirectly through regulating of the main transporter genes of Cd. The study unveiled that Cl− addition significantly improves Cd bioavailability in roots, which was discernible through the augmentation of Cd concentration and proportion in subcellular fractions, coupled with elevated energy values in key cellular components. Moreover, Cl− addition further augmented the intricate process of Cd transport from roots to shoots (16.1– 86.7 %), which was mainly attributed to the underexpression of OsHMA3 and the decrease in the formation of sulfuhydryl substances. This research provides a comprehensive understanding of the complex mechanisms governing Cd dynamics in rice plants in the presence of Cl−. By elucidating these processes, our findings not only contribute to fundamental knowledge in plant metal uptake but also hold promising implications for mitigating Cd contamination in rice cultivation systems.

Modeling and Analysis of Rice Root Water Uptake under the Dual Stresses of Drought and Waterlogging

The development of an accurate root water-uptake model is pivotal for evaluating crop evapotranspiration; understanding the combined effect of drought and waterlogging stresses; and optimizing water use efficiency, namely, crop yield [kg/ha] per unit of ET [mm]. Existing models often lack quantitative approaches to depicting crop root water uptake in scenarios of concurrent drought and waterlogging moisture stresses. Addressing this as our objective; we modified the Feddes root water-uptake model by revising the soil water potential response threshold and by introducing a novel method to calculate root water-uptake rates under simultaneous drought and waterlogging stresses. Then, we incorporated a water stress lag effect coefficient, φWs, that investigated the combined effect of historical drought and waterlogging stress events based on the assumption that the normalized influence weight of each past stress event decreases with an increase in the time interval before simulation as an exponential function of the decay rate. Further, we tested the model parameters and validated the results obtained with the modified model using data from three years (2016–2018) of rice (Oryza sativa, L) trails with pots in Bengbu, China. The modified Feddes model significantly improved precision by 9.6% on average when calculating relative transpiration rates, particularly post-stress recovery, and by 5.8% on average when simulating soil moisture fluctuations during drought periods. The root mean square error of relative transpiration was reduced by 60.8%, and soil water was reduced by 55.1%. By accounting for both the accumulated impact of past moisture stress and current moisture conditions in rice fields, the modified model will be useful in quantifying rice transpiration and rice water use efficiency in drought–waterlogging-prone areas in southern China.

Silencing an ATP-Dependent Caseinolytic Protease Proteolytic Subunit Gene Enhances the Resistance of Rice to Nilaparvata lugens.

The ATP-dependent caseinolytic protease (Clp) system has been reported to play an important role in plant growth, development, and defense against pathogens. However, whether the Clp system is involved in plant defense against herbivores remains largely unclear. We explore the role of the Clp system in rice defenses against brown planthopper (BPH) Nilaparvata lugens by combining chemical analysis, transcriptome, and molecular analyses, as well as insect bioassays. We found the expression of a rice Clp proteolytic subunit gene, OsClpP6, was suppressed by infestation of BPH gravid females and mechanical wounding. Silencing OsClpP6 enhanced the level of BPH-induced jasmonic acid (JA), JA-isoleucine (JA-Ile), and ABA, which in turn promoted the production of BPH-elicited rice volatiles and increased the resistance of rice to BPH. Field trials showed that silencing OsClpP6 decreased the population densities of BPH and WBPH. We also observed that silencing OsClpP6 decreased chlorophyll content in rice leaves at early developmental stages and impaired rice root growth and seed setting rate. These findings demonstrate that an OsClpP6-mediated Clp system in rice was involved in plant growth-defense trade-offs by affecting the biosynthesis of defense-related signaling molecules in chloroplasts. Moreover, rice plants, after recognizing BPH infestation, can enhance rice resistance to BPH by decreasing the Clp system activity. The work might provide a new way to breed rice varieties that are resistant to herbivores.

OsRR26, a type-B response regulator, modulates salinity tolerance in rice via phytohormone-mediated ROS accumulation in roots and influencing reproductive development.

OsRR26 is a cytokinin-responsive response regulator that promotes phytohormone-mediated ROS accumulation in rice roots, regulates seedling growth, spikelet fertility, awn development, represses NADPH oxidases, and negatively affects salinity tolerance. Plant two-component systems (TCS) play a pivotal role in phytohormone signaling, stress responses, and circadian rhythm. However, a significant knowledge gap exists regarding TCS in rice. In this study, we utilized a functional genomics approach to elucidate the role of OsRR26, a type-B response regulator in rice. Our results demonstrate that OsRR26 is responsive to cytokinin, ABA, and salinity stress, serving as the ortholog of Arabidopsis ARR11. OsRR26 primarily localizes to the nucleus and plays a crucial role in seedling growth, spikelet fertility, and the suppression of awn development. Exogenous application of cytokinin led to distinct patterns of reactive oxygen species (ROS) accumulation in the roots of both WT and transgenic plants (OsRR26OE and OsRR26KD), indicating the potential involvement of OsRR26 in cytokinin-mediated ROS signaling in roots. The application of exogenous ABA resulted in varied cellular compartmentalization of ROS between the WT and transgenic lines. Stress tolerance assays of these plants revealed that OsRR26 functions as a negative regulator of salinity stress tolerance across different developmental stages in rice. Physiological and biochemical analyses unveiled that the knockdown of OsRR26 enhances salinity tolerance, characterized by improved chlorophyll retention and the accumulation of soluble sugars, K+ content, and amino acids, particularly proline.

Rhodopseudomonas palustris shapes bacterial community, reduces Cd bioavailability in Cd contaminated flooding paddy soil, and improves rice performance

Photosynthetic bacteria (PSB) are suitable to live and remediate cadmium (Cd) in the slightly oxygenated or anaerobic flooding paddy field. However, there is currently limited study on the inhibition of Cd accumulation in rice by PSB, and the relevant mechanisms has yet to be elucidated. In the current study, we firstly used Rhodopseudomonas palustris SC06 (a typical PSB) as research target and combined physiology, biochemistry, microbiome and metabolome to evaluate the mechanisms of remeding Cd pollution in paddy field and inhibiting Cd accumulation in rice. Microbiome analysis results revealed that intensive inoculation with R. palustris SC06 successfully survived and multiplied in flooding paddy soil, and significantly increased the relatively abundance of anaerobic bacteria including Desulfobacterota, Anaerolineaceae, Geobacteraceae, and Gemmatimonadaceae by 46.40 %, 45.00 %, 50.12 %, and 21.30 %, respectively. Simultaneously, the structure of microbial community was regulated to maintain relative stability in the rhizosphere soil of rice under Cd stress. In turn, these bacteria communities reduced bioavailable Cd and enhanced residual Cd in soil, and induced the upregulation of sugar and organic acids in the rice roots, which further inhibited Cd uptake in rice seedlings, and dramatically improved the photosynthetic efficiency in the leaves and the activities of antioxidative enzymes in the roots. Finally, Cd content of the roots, stems, leaves, and grains significantly decreased by 38.14 %, 69.10 %, 83.40 %, and 37.24 % comparing with the control, respectively. This study provides a new strategy for the remediation of Cd-contaminated flooding paddy fields and the safe production of rice.