Rice Alpha-amylase Research Articles

Metabolic regulation of rice alpha-amylase and sucrose synthase genes in planta

Metabolic regulation of rice alpha-amylase and sucrose synthase genes in planta

The α-amylase genes in Oryza sativa: Characterization of cDNA clones and mRNA expression during seed germination

Two cDNA clones, pOS103 and pOS137, were isolated which code for distinct alpha-amylase isozymes in germinating rice seeds. Sequence analysis indicated that the clones encode polypeptides of approximately 48 kDa, both of which possess a signal peptide involved in directing secretion of the protein. Comparison of the two rice alpha-amylase amino acid sequence showed that they are 76% similar to each other, while showing 85% to 90% similarity with other cereal alpha-amylases. A comparison of eleven cereal alpha-amylases also revealed three new conserved regions (I', II', and IV') not previously identified in the animal, bacterial, and fungal alpha-amylases. Regions I' and IV' are sites for intron splicing while region II' is probably involved in calcium binding. One of the rice alpha-amylase cDNAs, pOS103, encodes a protein that has two potential N-glycosylation sites, one in the signal peptide and the other in the mature portion of the protein. The cDNA clone, pOS137, encodes an alpha-amylase with a single glycosylation site in the signal peptide, suggesting that the mature OS137 isozyme is not glycosylated. Analysis of the expression of these genes in germinating rice seeds indicated that mRNA corresponding to pOS103 and pOS137 could be detected throughout a 48 h period of seed imbibition. RNA levels, however, were dramatically stimulated by treatment of embryoless half-seeds with exogenous GA3. Our results demonstrate that at least two forms of alpha-amylase are expressed in germinating rice seeds and that the expression of these genes is regulated by the phytohormone GA3.

Interaction of a gibberellin-induced factor with the upstream region of an alpha-amylase gene in rice aleurone tissue.

The interaction between the DNA sequences of an alpha-amylase (EC 3.2.1.1) gene and a tissue-specific factor induced in rice (Oryza sativa L.) aleurone tissue by gibberellin was studied. DNA mobility-shift during electrophoresis indicated that a 500-base-pair sequence (HS500) of a rice alpha-amylase genomic clone (OSamy-a) specifically interacted with a factor from gibberellin-induced rice aleurone tissue. The amount of complex formed between the HS500 DNA fragment and the gibberellin-induced factor increased in proportion to increasing amounts of aleurone extract and decreased with the addition of unlabeled HS500 DNA fragment. A specific segment of the HS500 fragment was protected from exonuclease III digestion by protein(s) in the aleurone extract, revealing the approximate position of the protein-DNA interaction. In the protected region, there is a direct repeat that overlaps with a potential stem-loop structure. Protein in extracts from leaves, roots, or deembryonated seeds incubated without gibberellin A3 did not bind to the HS500 DNA fragment. However, the binding factor was induced in deembryonated seeds when exogenous gibberellin A3 was added during seed imbibition. This suggests that activation of alpha-amylase synthesis by gibberellin may be mediated by the formation of a factor that interacts with a specific sequence of the alpha-amylase gene.

Enzymic Mechanism of Starch Breakdown in Germinating Rice Seeds

The biosynthetic mechanism of alpha-amylase synthesis in germinating rice (Oryza sativa L. cv. Kimmazé) seeds has been studied both in vitro and in vivo. Special attention has been focused on the glycosylation of the enzyme molecule. Tunicamycin was found to inhibit glycosylation of alpha-amylase by 98% without significant inhibition of enzyme secretion. The inhibitory effect exerted by the antibiotic on glycosylation did not significantly alter enzyme activity.In an in vitro system using poly-(A) RNA isolated from rice scutellum and the reticulocyte lysate translation system, a precursor form of alpha-amylase (precursor I) is formed. Inhibition of glycosylation by Tunicamycin allowed detection of a nonglycosylated precursor (II) of alpha-amylase. The molecular weight of the nonglycosylated precursor II produced in the presence of Tunicamycin was 2,900 daltons less than that of the mature form of alpha-amylase (44,000) produced in the absence of Tunicamycin, and 1,800 daltons less than the in vitro synthesized molecule.The inhibition of glycosylation by Tunicamycin as well as in vitro translation helped clarify the heterogeneity of alpha-amylase isozymes. Isoelectrofocusing (pH 4-6) of the products, zymograms, and fluorography were employed on the separated isozyme components. The mature and Tunicamycin-treated nonglycosylated forms of alpha-amylase were found to consist of three isozymes. The in vitro translated precursor forms of alpha-amylase consisted of four multiple components. These results indicate that heterogeneity of alpha-amylase isozymes is not due to glycosylation of the enzyme protein but likely to differences in the primary structure of the protein moiety, which altogether support that rice alpha-amylase isozymes are encoded by multiple genes.