Review Of Machine Learning Methods Research Articles

A Review of Machine Learning Methods of Feature Selection and Classification for Autism Spectrum Disorder.

Autism Spectrum Disorder (ASD), according to DSM-5 in the American Psychiatric Association, is a neurodevelopmental disorder that includes deficits of social communication and social interaction with the presence of restricted and repetitive behaviors. Children with ASD have difficulties in joint attention and social reciprocity, using non-verbal and verbal behavior for communication. Due to these deficits, children with autism are often socially isolated. Researchers have emphasized the importance of early identification and early intervention to improve the level of functioning in language, communication, and well-being of children with autism. However, due to limited local assessment tools to diagnose these children, limited speech-language therapy services in rural areas, etc., these children do not get the rehabilitation they need until they get into compulsory schooling at the age of seven years old. Hence, efficient approaches towards early identification and intervention through speedy diagnostic procedures for ASD are required. In recent years, advanced technologies like machine learning have been used to analyze and investigate ASD to improve diagnostic accuracy, time, and quality without complexity. These machine learning methods include artificial neural networks, support vector machines, a priori algorithms, and decision trees, most of which have been applied to datasets connected with autism to construct predictive models. Meanwhile, the selection of features remains an essential task before developing a predictive model for ASD classification. This review mainly investigates and analyzes up-to-date studies on machine learning methods for feature selection and classification of ASD. We recommend methods to enhance machine learning’s speedy execution for processing complex data for conceptualization and implementation in ASD diagnostic research. This study can significantly benefit future research in autism using a machine learning approach for feature selection, classification, and processing imbalanced data.

A review of machine learning methods for retinal blood vessel segmentation and artery/vein classification.

The eye affords a unique opportunity to inspect a rich part of the human microvasculature non-invasively via retinal imaging. Retinal blood vessel segmentation and classification are prime steps for the diagnosis and risk assessment of microvascular and systemic diseases. A high volume of techniques based on deep learning have been published in recent years. In this context, we review 158 papers published between 2012 and 2020, focussing on methods based on machine and deep learning (DL) for automatic vessel segmentation and classification for fundus camera images. We divide the methods into various classes by task (segmentation or artery-vein classification), technique (supervised or unsupervised, deep and non-deep learning, hand-crafted methods) and more specific algorithms (e.g. multiscale, morphology). We discuss advantages and limitations, and include tables summarising results at-a-glance. Finally, we attempt to assess the quantitative merit of DL methods in terms of accuracy improvement compared to other methods. The results allow us to offer our views on the outlook for vessel segmentation and classification for fundus camera images.

Integrated Multi-Omics Analyses in Oncology: A Review of Machine Learning Methods and Tools.

In recent years, high-throughput sequencing technologies provide unprecedented opportunity to depict cancer samples at multiple molecular levels. The integration and analysis of these multi-omics datasets is a crucial and critical step to gain actionable knowledge in a precision medicine framework. This paper explores recent data-driven methodologies that have been developed and applied to respond major challenges of stratified medicine in oncology, including patients' phenotyping, biomarker discovery, and drug repurposing. We systematically retrieved peer-reviewed journals published from 2014 to 2019, select and thoroughly describe the tools presenting the most promising innovations regarding the integration of heterogeneous data, the machine learning methodologies that successfully tackled the complexity of multi-omics data, and the frameworks to deliver actionable results for clinical practice. The review is organized according to the applied methods: Deep learning, Network-based methods, Clustering, Features Extraction, and Transformation, Factorization. We provide an overview of the tools available in each methodological group and underline the relationship among the different categories. Our analysis revealed how multi-omics datasets could be exploited to drive precision oncology, but also current limitations in the development of multi-omics data integration.

Suicidal Ideation Detection: A Review of Machine Learning Methods and Applications

Suicide is a critical issue in modern society. Early detection and prevention of suicide attempts should be addressed to save people's life. Current suicidal ideation detection methods include clinical methods based on the interaction between social workers or experts and the targeted individuals and machine learning techniques with feature engineering or deep learning for automatic detection based on online social contents. This paper is the first survey that comprehensively introduces and discusses the methods from these categories. Domain-specific applications of suicidal ideation detection are reviewed according to their data sources, i.e., questionnaires, electronic health records, suicide notes, and online user content. Several specific tasks and datasets are introduced and summarized to facilitate further research. Finally, we summarize the limitations of current work and provide an outlook of further research directions.

A systematic literature review of machine learning methods applied to predictive maintenance

The amount of data extracted from production processes has increased exponentially due to the proliferation of sensing technologies. When processed and analyzed, data can bring out valuable information and knowledge from manufacturing process, production system and equipment. In industries, equipment maintenance is an important key, and affects the operation time of equipment and its efficiency. Thus, equipment faults need to be identified and solved, avoiding shutdown in the production processes. Machine Learning (ML) methods have been emerged as a promising tool in Predictive Maintenance (PdM) applications to prevent failures in equipment that make up the production lines in the factory floor. However, the performance of PdM applications depends on the appropriate choice of the ML method. The aim of this paper is to present a systematic literature review of ML methods applied to PdM, showing which are being explored in this field and the performance of the current state-of-the-art ML techniques. This review focuses on two scientific databases and provides a useful foundation on the ML techniques, their main results, challenges and opportunities, as well as it supports new research works in the PdM field.

Machine learning in predicting graft failure following kidney transplantation: A systematic review of published predictive models

IntroductionMachine learning has been increasingly used to develop predictive models to diagnose different disease conditions. The heterogeneity of the kidney transplant population makes predicting graft outcomes extremely challenging. Several kidney graft outcome prediction models have been developed using machine learning, and are available in the literature. However, a systematic review of machine learning based prediction methods applied to kidney transplant has not been done to date. The main aim of our study was to perform an in-depth systematic analysis of different machine learning methods used to predict graft outcomes among kidney transplant patients, and assess their usefulness as an aid to decision-making. MethodsA systemic review of machine learning methods used to predict graft outcomes among kidney transplant patients was carried out using a search of the Medline, the Cumulative Index to Nursing and Allied Health Literature, EMBASE, PsycINFO and Cochrane databases. ResultsA total of 295 articles were identified and extracted. Of these, 18 met the inclusion criteria. Most of the studies were published in the United States after 2010. The population size used to develop the models varied from 80 to 92,844, and the number of features in the models ranged from 6 to 71. The most common machine learning methods used were artificial neural networks, decision trees and Bayesian belief networks. Most of the machine learning based predictive models predicted graft failure with high sensitivity and specificity. Only one machine learning based prediction model had modelled time-to-event (survival) information. Seven studies compared the predictive performance of machine learning models with traditional regression methods and the performance of machine learning methods was found to be mixed, when compared with traditional regression methods. ConclusionThere was a wide variation in the size of the study population and the input variables used. However, the prediction accuracy provided mixed results when machine learning and traditional predictive methods are compared. Based on reported gains in predictive performance, machine learning has the potential to improve kidney transplant outcome prediction and aid medical decision making

Harnessing the Power of Machine Learning in Dementia Informatics Research: Issues, Opportunities, and Challenges.

Dementia is a chronic and degenerative condition affecting millions globally. The care of patients with dementia presents an ever-continuing challenge to healthcare systems in the 21st century. Medical and health sciences have generated unprecedented volumes of data related to health and wellbeing for patients with dementia due to advances in information technology, such as genetics, neuroimaging, cognitive assessment, free texts, routine electronic health records, etc. Making the best use of these diverse and strategic resources will lead to high-quality care of patients with dementia. As such, machine learning becomes a crucial factor in achieving this objective. The aim of this paper is to provide a state-of-the-art review of machine learning methods applied to health informatics for dementia care. We collate and review the existing scientific methodologies and identify the relevant issues and challenges when faced with big health data. Machine learning has demonstrated promising applications to neuroimaging data analysis for dementia care, while relatively less effort has been made to make use of integrated heterogeneous data via advanced machine learning approaches. We further indicate future potential and research directions in applying advanced machine learning, such as deep learning, to dementia informatics.

Review of machine learning methods for Big satellite Data classification

With the appearance of free access to Big satellite data, the development of machine learning methods based on geospatial data, in particular satellite data, is becoming more and more relevant. In this paper, we consider and analyze the peculiarities of the basic machine learning methods and results of their application to the tasks of land cover classification based on high resolution satellite data. Special attention is paid to deep architectures, in particular, convolutional neural networks, which nowadays are the most powerful and precise method for visual pattern recognizing. We determine the main advantages of the deep learning methods over the traditional approaches to the classification tasks, that have been used over the last decades and based on expert knowledge to the features extraction from the input data.

A review of machine learning methods to predict the solubility of overexpressed recombinant proteins in Escherichia coli.

BackgroundOver the last 20 years in biotechnology, the production of recombinant proteins has been a crucial bioprocess in both biopharmaceutical and research arena in terms of human health, scientific impact and economic volume. Although logical strategies of genetic engineering have been established, protein overexpression is still an art. In particular, heterologous expression is often hindered by low level of production and frequent fail due to opaque reasons. The problem is accentuated because there is no generic solution available to enhance heterologous overexpression. For a given protein, the extent of its solubility can indicate the quality of its function. Over 30% of synthesized proteins are not soluble. In certain experimental circumstances, including temperature, expression host, etc., protein solubility is a feature eventually defined by its sequence. Until now, numerous methods based on machine learning are proposed to predict the solubility of protein merely from its amino acid sequence. In spite of the 20 years of research on the matter, no comprehensive review is available on the published methods.ResultsThis paper presents an extensive review of the existing models to predict protein solubility in Escherichia coli recombinant protein overexpression system. The models are investigated and compared regarding the datasets used, features, feature selection methods, machine learning techniques and accuracy of prediction. A discussion on the models is provided at the end.ConclusionsThis study aims to investigate extensively the machine learning based methods to predict recombinant protein solubility, so as to offer a general as well as a detailed understanding for researches in the field. Some of the models present acceptable prediction performances and convenient user interfaces. These models can be considered as valuable tools to predict recombinant protein overexpression results before performing real laboratory experiments, thus saving labour, time and cost.

Probing neural mechanisms of music perception, cognition, and performance using multivariate decoding.

Recent neuroscience research has shown increasing use of multivariate decoding methods and machine learning. These methods, by uncovering the source and nature of informative variance in large data sets, invert the classical direction of inference that attempts to explain brain activity from mental state variables or stimulus features. However, these techniques are not yet commonly used among music researchers. In this position article, we introduce some key features of machine learning methods and review their use in the field of cognitive and behavioral neuroscience of music. We argue for the great potential of these methods in decoding multiple data types, specifically audio waveforms, electroen- cephalography, functional MRI, and motion capture data. By finding the most informative aspects of stimulus and performance data, hypotheses can be generated pertaining to how the brain processes incoming musical information and generates behavioral output, respectively. Importantly, these methods are also applicable to different neural and physiological data types such as magnetoencephalography, near-infrared spectroscopy, positron emission tomography, and electromyography.Keywords: machine learning, classification, music neuroscienceSupplemental materials: http://dx.doi.org/10.1037/a0031014.suppMusic is acoustic information with complex temporal and spa- tial features. Research into perception and cognition of multifac- eted aspects of music aims to decode the information from neural signals elicited by listening to music. Music performance, on the other hand, entails the encoding of musical information to neural commands issued to the muscles. To understand the neural pro- cesses underlying music perception, cognition, and performance, therefore, researchers face issues of extracting meaningful infor- mation from extremely large data sets with regard to neural, physiological, and biomechanical signals. This is nontrivial in light of recent technological advances in data collection, which can lead to a potentially overwhelming amount of data. The supervised and unsupervised methods of machine learning are powerful tools for uncovering unseen patterns in these large data sets. In this way, not only can the means of specified conditions be compared, but data-driven methods are used to uncover sources of informative variance in the signals. Moreover, machine learning allows for quantitative evaluation of individual differences in music percep- tion and performance.In this article, we introduce key features of machine learning and highlight some examples of their use on a range of data types. After reviewing basic concepts and terminology, we discuss di- mensionality reduction and the impact of the choice of algorithm. We then turn to data types we judge to be most relevant to the neural processing of music. For an audio waveform, it is possible to elucidate the most perceptually informative part of the signal, by determining which aspects of the signal are most salient or useful to the brain in determining specific characteristics of the sound. In the same way, it is possible to uncover neural representations of musical attributes such as rhythm and harmony in a data-driven way by applying supervised and unsupervised learning to single- trial electroencephalography (EEG) or functional MRI (fMRI) data. Finally, machine learning methods are also useful in behav- ioral research, allowing characterization of fundamental patterns of movements that use a large number of joints and muscles during musical performance.MethodsAlthough we do not aim to give a complete overview of these methods here (for a detailed review of machine learning methods for brain imaging, see Lemm, Blankertz, Dickhaus, & Muller, 2011), we introduce a number of key aspects of machine learning as they pertain to music cognition research.Basic TerminologyMachine learning (or statistical learning) involves uncovering meaningful patterns in collections of observations, often with the goal of classifying, or categorizing, the observations in some way. …