Active vegetation restoration plays an important role in the improvement in soil organic matter (SOM), including the carbon (C), nitrogen (N) and phosphorus (P) sequestration of degraded mining ecosystems. However, there is still a lack of understanding of the key drivers of SOM pool size and dynamics in active vegetation restoration. For this study, soil was collected from five different sites (Xiaoxian, Dingyuan, Chaohu, Tongling and Dongzhi), four habitats (platforms, slopes, steps and native areas) and two soil layers (0–20 cm and 20–40 cm) in limestone mines of Anhui province to quantify the spatial distribution of SOM contents and their stoichiometric characteristics and influential factors. It was found that the top soil in Chaohu had the highest significant C, N and P contents in the ranges of 14.95–17.97, 1.74–2.21 and 0.80–1.24 g/kg, respectively. Comparing the stoichiometric ratios of the different sites revealed significant differences in C:N and N:P ratios, but C:P ratios were relatively consistent. In particular, the C:N and C:P ratios in deep soil were higher than those in top soil, whereas the N:P ratio in deep soil was lower than that in top soil, suggesting that soil N is a major limiting factor in the top soil. The SOM content did not differ significantly between the three reclaimed habitats, but was significantly higher than that in the native habitat, suggesting that mine restoration has significantly enhanced SOM accumulation. Further analysis showed that nutrient availability and enzyme activity are important factors affecting soil C, N and P content in top soil, while the relationship gradually weakens in deep soil. This was attributed to active anthropogenic management and conservation measures during the early stages of reclamation. This study shows that the ecological recovery of the mining area can be enhanced by implementing differentiated vegetation planting strategies and anthropogenic management on different habitats in the mining area.