The distribution and abundance of organisms is typically shaped by multiple biotic and abiotic processes. Micropredators are parasite-like organisms that are smaller than their hosts and/or prey and feed on multiple hosts during a given life stage. Unlike typical parasites, however, they spend much or most of their time free-living, associating only temporarily with hosts. In the ocean, micropredators can impact multiple fish species, and in particular can have significant lethal and sub-lethal effects on newly settled fish. Although gnathiid isopods are abundant and primary micropredators in coral reef ecosystems, their impacts are relatively unexplored within sub-tidal temperate rocky reefs. We investigated the distribution of juvenile gnathiid isopods along sub-tidal temperate rocky reefs and tested trap methodology. We also quantified both the sub-lethal and lethal impacts of feeding-stage juvenile gnathiid isopods on juvenile, post-settlement reef fish, Heterostichus rostratus (giant kelpfish). We were most interested in determining the relationship between gnathiid infestation level and fish swimming performance, in particular swimming metrics relevant to predator avoidance maneuvers. We found that Gnathia tridens was present in rocky reefs rather than embayments along the Southern California coastline and that within rocky reefs, gnathiids occurred in the highest densities in lighted traps. Surprisingly, we observed almost no influence of fish size or gnathiid sub-lethal infestation level on ambient or burst swimming performance metrics. However, burst duration was reduced by gnathiid infestation, which is important in predator avoidance. There were significant differences in survivorship among small fish compared to large fish as a result of gnathiid infestation. Larger fish survived higher numbers of gnathiids than smaller fish, indicating that parasite-induced mortality is greater for smaller fish. Investigations of the effects of micropredators on subsequent predator-mediated mortality, including the susceptibility of fishes and their individual responses to micropredators, can further contribute to our understanding of processes affecting recruitment in resident reef fish populations. Further research, especially within temperate sub-tidal ecosystems, is needed to understand and highlight the overlooked importance of micropredation in shaping fish populations within a reefscape.