In a concrete beam, cracking is generated on the tension side under the effect of flexure, shear, and torsional loadings. Accordingly, these weak concrete members require repair and/or strengthening to increase or restore their internal load capacity. In the current experimental and numerical investigations on concrete beams, the impact of using notches with different width to depth ratios on the ultimate flexural load under a three-point test was considered. Further, the flexural behavior performance of a notched concrete beam repaired using the three repair materials—cement mortar, bacterial mortar, and adhesive—was also examined. Consequently, a comparative study was implemented between the experimental and numerical results. A concrete damage plasticity (CDP) model was used for the finite element numerical analysis of the beams. The differences in numerical and experimental measured results ranged from 0.65 to 22.20% for the ultimate load carrying capacity. As the notch size increased, the ultimate load carrying capacity of the beam reduced. Additionally, a linear regression model was used to predict the ultimate load values at a notch width interval of 5 mm up to a maximum notch width of 100 mm. It was observed that the ultimate load capacity for a repaired beam increased as compared to the notched beam for all three repair materials under consideration. And the maximum ultimate load increased in the case of notched beams repaired using adhesive. Furthermore, in comparison to the cement mortar, the performance of the bacterial mortar in terms of the ultimate load was more. The bacterial mortar was found to be more sustainable and more durable as a repair material for concrete structures.