Remote Coral Reefs Research Articles

Geography and island geomorphology shape fish assemblage structure on isolated coral reef systems.

We quantify the relative importance of multi‐scale drivers of reef fish assemblage structure on isolated coral reefs at the intersection of the Indian and Indo‐Pacific biogeographical provinces. Large (>30 cm), functionally‐important and commonly targeted species of fish, were surveyed on the outer reef crest/front at 38 coral reef sites spread across three oceanic coral reef systems (i.e. Christmas Island, Cocos (Keeling) Islands and the Rowley Shoals), in the tropical Indian Ocean (c. 1.126 x 106 km2). The effects of coral cover, exposure, fishing pressure, lagoon size and geographical context, on observed patterns of fish assemblage structure were modelled using Multivariate Regression Trees. Reef fish assemblages were clearly separated in space with geographical location explaining ~53 % of the observed variation. Lagoon size, within each isolated reef system was an equally effective proxy for explaining fish assemblage structure. Among local‐scale variables, ‘distance from port’, a proxy for the influence of fishing, explained 5.2% of total variation and separated the four most isolated reefs from Cocos (Keeling) Island, from reefs with closer boating access. Other factors were not significant. Major divisions in assemblage structure were driven by sister taxa that displayed little geographical overlap between reef systems and low abundances of several species on Christmas Island corresponding to small lagoon habitats. Exclusion of geographical context from the analysis resulted in local processes explaining 47.3% of the variation, highlighting the importance of controlling for spatial correlation to understand the drivers of fish assemblage structure. Our results suggest reef fish assemblage structure on remote coral reef systems in the tropical eastern Indian Ocean reflects a biogeographical legacy of isolation between Indian and Pacific fish faunas and geomorphological variation within the region, more than local fishing pressure or reef condition. Our findings re‐emphasise the importance that historical processes play in structuring contemporary biotic communities.

Shark baselines and the conservation role of remote coral reef ecosystems.

Scientific monitoring has recorded only a recent fraction of the oceans' alteration history. This biases our understanding of marine ecosystems. Remote coral reef ecosystems are often considered pristine because of high shark abundance. However, given the long history and global nature of fishing, sharks' vulnerability, and the ecological consequences of shark declines, these states may not be natural. In the Chagos archipelago, one of the remotest coral reef systems on the planet, protected by a very large marine reserve, we integrated disparate fisheries and scientific survey data to reconstruct baselines and long-term population trajectories of two dominant sharks. In 2012, we estimated 571,310 gray reef and 31,693 silvertip sharks, about 79 and 7% of their baseline levels. These species were exploited longer and more intensively than previously thought and responded to fishing and protection with variable and compensatory population trajectories. Our approach highlights the value of integrative and historical analyses to evaluate large marine ecosystems currently considered pristine.

Are Sea Surface Temperature satellite measurements reliable proxies of lagoon temperature in the South Pacific?

In remote coral reef environments, lagoon and reef in situ measurements of temperature are scarce. Sea Surface Temperature (SST) measured by satellite has been frequently used as a proxy of the lagoon temperature experienced by coral reef organisms (TL) especially during coral bleaching events. However, the link between SST and TL is poorly characterized. First, we compared the correlation between various SST series and TL from 2012 to 2016 in three atolls and one island in the Central South Pacific Ocean. Simple linear correlation between SST and TL ranged between 0.44 and 0.97 depending on lagoons, localities of sensors, and type of SST data. High-resolution-satellite-measurements of SST inside the lagoons did not outperform oceanic SST series, suggesting that SST products are not adapted for small lagoons. Second, we modelled the difference between oceanic SST and TL as a function of the drivers of lagoon water renewal and mixing, namely waves, tide, wind, and season. The multivariate models reduced significantly the bias between oceanic SST and TL. In atoll lagoons, and probably in other hydrodynamically semi-open systems, a correction taking into account these factors is necessary when SST are used to characterize organisms’ thermal stress thresholds.

21st-century rise in anthropogenic nitrogen deposition on a remote coral reef.

With the rapid rise in pollution-associated nitrogen inputs to the western Pacific, it has been suggested that even the open ocean has been affected. In a coral core from Dongsha Atoll, a remote coral reef ecosystem, we observe a decline in the 15N/14N of coral skeleton-bound organic matter, which signals increased deposition of anthropogenic atmospheric N on the open ocean and its incorporation into plankton and, in turn, the atoll corals. The first clear change occurred just before 2000 CE, decades later than predicted by other work. The amplitude of change suggests that, by 2010, anthropogenic atmospheric N deposition represented 20 ± 5% of the annual N input to the surface ocean in this region, which appears to be at the lower end of other estimates.

Remote coral reefs can sustain high growth potential and may match future sea-level trends.

Climate-induced disturbances are contributing to rapid, global-scale changes in coral reef ecology. As a consequence, reef carbonate budgets are declining, threatening reef growth potential and thus capacity to track rising sea-levels. Whether disturbed reefs can recover their growth potential and how rapidly, are thus critical research questions. Here we address these questions by measuring the carbonate budgets of 28 reefs across the Chagos Archipelago (Indian Ocean) which, while geographically remote and largely isolated from compounding human impacts, experienced severe (>90%) coral mortality during the 1998 warming event. Coral communities on most reefs recovered rapidly and we show that carbonate budgets in 2015 average +3.7 G (G = kg CaCO3 m−2 yr−1). Most significantly the production rates on Acropora-dominated reefs, the corals most severely impacted in 1998, averaged +8.4 G by 2015, comparable with estimates under pre-human (Holocene) disturbance conditions. These positive budgets are reflected in high reef growth rates (4.2 mm yr−1) on Acropora-dominated reefs, demonstrating that carbonate budgets on these remote reefs have recovered rapidly from major climate-driven disturbances. Critically, these reefs retain the capacity to grow at rates exceeding measured regional mid-late Holocene and 20th century sea-level rise, and close to IPCC sea-level rise projections through to 2100.

Patrones a gran escala del reclutamiento de coral en Isla Mona, Puerto Rico: evidencia de una trayectoria transitoria de comunidad después del blanqueamiento y mortalidad coralino masivo

Coral reefs have largely declined across the northeastern Caribbean following the 2005 massive bleaching event. Climate change-related sea surface warming and coral disease outbreaks of a white plague-like syndrome and of yellow band disease (YBD) have caused significant coral decline affecting massive reef building species (i.e., Orbicella annularisspecies complex) which show no apparent signs of recovery through larval sexual recruitment. We addressed coral recruit densities across three spur and groove reef locations along the western shelf of remote Mona Island, Puerto Rico: Punta Capitán (PCA), Pasa de Las Carmelitas (PLC), and Las Carmelitas-South (LCS). Data were collected during November 2012 along 93 haphazard transects across three depth zones (<5m, 5-10m, 10-15m). A total of 32 coral species (9 octocorals, 1 hydrocoral, 22 scleractinians) were documented among the recruit community. Communities had low densities and dominance by short-lived brooder species seven years after the 2005 event. Mean coral recruit density ranged from 1.2 to 10.5/m2 at PCA, 6.3 to 7.2/m2 at LCS, 4.5 to 9.5/m2 at PLC. Differences in coral recruit community structure can be attributed to slight variation in percent macroalgal cover and composition as study sites had nearly similar benthic spatial heterogeneity. Dominance by ephemeral coral species was widespread. Recovery of largely declining massive reef-building species such as theO. annularis species complex was limited or non-existent. The lack of recovery could be the combined result of several mechanisms involving climate change, YBD disease, macroalgae, fishing, urchins and Mona Island’s reefs limited connectivity to other reef systems. There is also for rehabilitation of fish trophic structure, with emphasis in recovering herbivore guilds and depleted populations of D. antillarum. Failing to recognize the importance of ecosystem-based management and resilience rehabilitation may deem remote coral reefs recovery unlikely. Rev. Biol. Trop. 62 (Suppl. 3): 49-64. Epub 2014 September 01.

Benthic communities at two remote Pacific coral reefs: effects of reef habitat, depth, and wave energy gradients on spatial patterns

Kingman Reef and Palmyra Atoll in the central Pacific are among the most remote coral reefs on the planet. Here we describe spatial patterns in their benthic communities across reef habitats and depths, and consider these in the context of oceanographic gradients. Benthic communities at both locations were dominated by calcifying organisms (54–86% cover), namely hard corals (20–74%) and crustose coralline algae (CCA) (10–36%). While turf algae were relatively common at both locations (8–22%), larger fleshy macroalgae were virtually absent at Kingman (<1%) and rare at Palmyra (0.7–9.3%). Hard coral cover was higher, but with low diversity, in more sheltered habitats such as Palmyra’s backreef and Kingman’s patch reefs. Almost exclusive dominance by slow-growing Porites on Kingman’s patch reefs provides indirect evidence of competitive exclusion, probably late in a successional sequence. In contrast, the more exposed forereef habitats at both Kingman and Palmyra had higher coral diversity and were characterized by fast-growing corals (e.g., Acropora and Pocillopora), indicative of more dynamic environments. In general at both locations, soft coral cover increased with depth, likely reflecting increasingly efficient heterotrophic abilities. CCA and fleshy macroalgae cover decreased with depth, likely due to reduced light. Cover of other calcified macroalgae, predominantly Halimeda, increased with depth. This likely reflects the ability of many calcifying macroalgae to efficiently harvest light at deeper depths, in combination with an increased nutrient supply from upwelling promoting growth. At Palmyra, patterns of hard coral cover with depth were inconsistent, but cover peaked at mid-depths at Kingman. On Kingman’s forereef, benthic community composition was strongly related to wave energy, with hard coral cover decreasing and becoming more spatially clustered with increased wave energy, likely as a result of physical damage leading to patches of coral in localized shelter. In contrast, the cover of turf algae at Kingman was positively related to wave energy, reflecting their ability to rapidly colonize newly available space. No significant patterns with wave energy were observed on Palmyra’s forereef, suggesting that a more detailed model is required to study biophysical coupling there. Kingman, Palmyra, and other remote oceanic reefs provide interesting case studies to explore biophysical influences on benthic ecology and dynamics.

Classification of remote Pacific coral reefs by physical oceanographic environment

[1] The oceanographic environment is a key element in structuring coral reef ecosystems by setting the range of physical and chemical conditions in which coral reef-builders live. A cluster analysis of physical and chemical oceanographic data is used to classify coral habitats in the remote tropical and subtropical Pacific Ocean based on average temperature, temperature seasonal cycle, nutrient levels, salinity, aragonite saturation state, storm frequency, intense hurricane hits, and dissolved oxygen as well as temperature anomalies in degree heating weeks. The resulting seven geographic habitats are stable to perturbations in types of data used in the cluster analysis. Based on recent coral reef survey data in the area, the coral cover was related to the identified geographic regions. The habitats tend to be geographically clustered, and each is characterized by a unique combination of oceanographic conditions. Previous studies suggest coral reef habitats are associated with a uniform array of oceanographic conditions, while our results demonstrate that finer-scale variations in physical variables may control coral reef environments. The results better define the physical environment of remote coral reefs, forming a foundation for future work addressing physical habitat perturbation and anthropogenic impacts on reefs.

Corals mass-cultured from eggs and transplanted as juveniles to their native, remote coral reef

We attempted to develop practical methods for coral reef rehabilitation, by means of the production of juveniles obtained from sexual reproduction, for a remote island where recruit- ment is limited. Adult corals (broodstocks) of Acropora tenuis were transported 1100 km from Okinotorishima, Japan's southernmost island in the Pacific, to a hatchery in Okinawa and main- tained in land tanks. Eggs were obtained from captive spawning and the resulting larvae and juve- nile corals were cultured under laboratory conditions. The present methodology enabled high sur- vivorship and led to the successful mass production of coral juveniles. A total of 564 substrates with ~63 000 juvenile corals at the age of 10 mo were transported to the native reef. They were then transplanted in 3 experimental treatments, in order to evaluate effectiveness of protection by cages and/or hiding the juveniles under other substrates. Additionally, the effects of orientation on coral growth were tested by attaching the juveniles face down. The cages effectively protected the corals from predation and nibbling by fishes. The unshaded, upward facing corals in the cages steadily increased their coverage nearly 4-fold in ~2 yr.

SCUBA diver observations and placard tags to monitor grey reef sharks, Carcharhinus amblyrhynchos, at Sha'ab Rumi, The Sudan: assessment and future directions

Establishing baseline data on the abundance of threatened shark species is critical for monitoring site- and region-specific population tends over time. This is of particular importance for monitoring sharks at remote locations or in regions where there are no reliable data on shark numbers, fishing effort and current population status. Through establishing a standardized recreational SCUBA diver observation programme, this study examined the number, size and sex-composition of grey reef sharks, Carcharhinus amblyrhynchos, on a remote coral reef system off the Red Sea coast of Sudan. In addition, placard tags were attached to individual sharks to examine coarse scale residency and movement patterns and to determine the effectiveness of this technique. Over a 4.5 month period (December 2007–April 2008), a mean (±SE) of 5.9 ± 0.3 grey reef sharks were observed per diving day with peak numbers of sharks associated with temperatures of 26–26.9°C and strong currents. Estimated mean (±SE) total length of observed sharks was 1.9 ± 0.03 m identifying that most animals were mature. Female sharks were dominant on the site and pregnant females were recorded. Placard tagged sharks (N = 4) were observed by recreational SCUBA divers throughout the study period (23.1%, 20.0%, 16.9% and 3.1% of total observation diving days) indicating sporadic site attachment. The placard tags remained intact and were free of fouling for a total of 175 days. The numbers of grey reef sharks seen on this Red Sea coral complex suggest a healthy, relatively unexploited population. This study demonstrates that the recreational diver community, which forms a large pool of skilled volunteers, can generate baseline data on shark numbers at regularly dived sites and provide insights into the ecology of the observed species. Modification of placard tags, including attachment to the dorsal fin and time corrodible release systems may provide an inexpensive and accepted tool for monitoring individual shark residency and movement patterns. Engaging the recreational SCUBA diver community in a standardized scientific monitoring programme has the potential to monitor trends in shark populations over large spatial and temporal scales.

New species of excavating sponges (Porifera: Demospongiae) on coral reefs from the Mexican Pacific Ocean

Three new species of coral reef boring sponges were found in remote coral reefs from Revillagigedo Island, an archipelago that is 386 km from the continent.Cliona medinaesp. nov. is a sponge with orange-yellow papillae characterized by short almost straight spirasters.Cliona tropicalissp. nov., is a yellow papillate sponge with a spicule complement similar to the species included in theCliona viridiscomplex. However, the new species differs from the rest of the species mainly in its external morphology and by differences in the size and shape of spicules.Thoosa purpureasp. nov. is characterized by its purple colour, and the spicular complement formed by tylostyles, two amphiaster categories, bi- tri- and tetra-radiate oxyasters and smooth or microspined centrotylote oxeas. In addition,Cliothosa tylostrongylatasp. nov. is also described from coral reefs from the southern Mexican Pacific Ocean. This is a light red species, with tylostyles and tylostrongyles as megascleres and ramose and nodulose amphiasters as microscleres. The four species were found exclusively excavating skeletons of live or dead corals of the genusPocillopora. This study increases the number of boring sponges known from the Mexican Pacific Ocean to 22 species and it is the first study on marine sponge fauna from the Revillagigedo archipelago.

Phylogenetic diversity of bacteria associated with the marine sponge Agelas robusta from South China Sea

It is well known that marine sponges harbor large numbers of bacteria, some of which have been proved to be sponge-specific. The diversity of bacteria in marine sponges distributed along the coast of South China Sea has been previously studied but that of bacteria in sponges inhabiting the open sea has been rarely investigated. In this report, the diversity of bacteria associated with the marine sponge Agelas robusta from a remote coral reef in the South China Sea was documented employing 16S rDNA library construction, amplified ribosomal DNA restriction analysis (ARDRA) and phylogenetic analysis. A total of 32 phylotypes were finally categorized in nine phyla including Cyanobacteria, Proteobacteria, Chloroflexi, Firmicutes, Actinobacteria, Acidobacteria, Planctomycetes, Bacteroidetes and Gemmatimonadetes. The dominant phylum was Proteobacteria whereas the dominant genus was Synechococcus in Cyanobacteria. Some spongespecific bacteria were also found in the bacteria population, but the proportion (5 OTUs/32 OTUs) was much lower than other sponges. This study reveals the phylogenetic diversity of bacteria in A. robusta and confirms the presence of some sponge-specific bacteria in the South China Sea. Understanding the diversity of sponge-associated bacteria in China assists to exploit the bacteria resources for biotechnology.

Shifting Baselines, Local Impacts, and Global Change on Coral Reefs

The striking health of remote coral reefs provides clear evidence that protection from local overfishing and pollution can help mitigate the impacts of global warming.

Coral Reefs to Get Protection

Environmentalists are cheering a Bush Administration decision to phase out commercial fishing around one of the most remote and undisturbed coral reefs in the world. The Northwestern Hawaiian Islands Coral Reef Ecosystem Reserve's 348,550 square kilometers is home to a rich diversity of fish,

Analysis of coral reef sound recordings in the Phoenix and Line Islands

Automated acoustic recording stations are being considered to allow managers to monitor remote coral reefs. Sounds of interest include those of biological, environmental, and anthropogenic origin. Preliminary data about remote acoustic monitoring of reefs were obtained in February–March of 2001 and 2002 during National Oceanic and Atmospheric Administration (NOAA) cruises to the Phoenix and Line Islands in the western Pacific Ocean. In 2001, sonobuoys manufactured by East Carolina University (ECU) were deployed to make a 90-s acoustic recording every hour for a 24-h period at each location. In 2002, continuous 24-h acoustic recordings were made using an experimental Remote Underwater Digital Acoustic Recording (RUDAR) system. The ECU sonobuoys recorded diurnal and locational variations in the sounds of snapping shrimp as well as variations in ambient noise. At most locations, the snapping shrimp sound level increased near sunset and decreased near sunrise. The experimental RUDAR system recorded limited data due to some technical problems arising from field use. Analysis of the recordings as well as recommendations for future studies will be presented.

Mass Transport from Pollution Sources to Remote Coral Reefs in Eilat (Gulf of Aqaba, Red Sea)

Over the last decades, damage to coral reefs from pollution and over-exploitation has accelerated alarmingly. The coral reefs of Eilat are currently undergoing such severe deterioration, and it has been suggested that pollution may be responsible. The Eilat pollution sources are located 5–8 km north of the coral reefs, and it is hypothesised that the pollutants reach the reef sites by current-derived mass transport. This study aimed to test this hypothesis by determining possible occurrence of mass transport from the pollution sites to the reefs, and to determine the pathways and modes of transported pollutants. We also wished to test the applicability of the ‘fluorescently-labelled tracer’ method, as a reliable tool for assessing mass transport in coastal marine environments. The results reveal that particulate matter from pollution sites reaches the remote coral reefs of Eilat, both as bedload and suspension-load particles. Estimates suggest that the minimum velocity of fine particles (5–10 μm), as suspension load, is 0.4k m per day; while the coarse particle velocity (100–200 μm), as bedload, is an order of magnitude lower, i.e. 0.04 km per day. The results show that fluorescently-labelled tracers are a reliable and highly sensitive tool for assessing mass transport in marine environments.

Mass transport from pollution sources to remote coral reefs in Eilat (Gulf of Aqaba, Red Sea)

Over the last decades, damage to coral reefs from pollution and over-exploitation has accelerated alarmingly. The coral reefs of Eilat are currently undergoing such severe deterioration, and it has been suggested that pollution may be responsible. The Eilat pollution sources are located 5–8 km north of the coral reefs, and it is hypothesised that the pollutants reach the reef sites by current-derived mass transport. This study aimed to test this hypothesis by determining possible occurrence of mass transport from the pollution sites to the reefs, and to determine the pathways and modes of transported pollutants. We also wished to test the applicability of the ‘fluorescently-labelled tracer’ method, as a reliable tool for assessing mass transport in coastal marine environments. The results reveal that particulate matter from pollution sites reaches the remote coral reefs of Eilat, both as bedload and suspension-load particles. Estimates suggest that the minimum velocity of fine particles (5–10 μm), as suspension load, is 0.4k m per day; while the coarse particle velocity (100–200 μm), as bedload, is an order of magnitude lower, i.e. 0.04 km per day. The results show that fluorescently-labelled tracers are a reliable and highly sensitive tool for assessing mass transport in marine environments.

The scientific issues surrounding remote detection of submerged coral ecosystems

According to the 1993 colloquium on the ‘Global status of coral reefs', our understanding of the global role of coral reefs is inadequate. To increase our understanding, an accurate large-scale mapping and monitoring programme is necessary. Historically, coastal zones have been mapped using traditional surveying tools such as topographic maps, nautical charts, existing aerial photographs and direct observations. Although less expensive than digital imagery, exclusive use of these traditional tools may not be practical for monitoring large or remote coral reef ecosystems accurately. Researchers are attempting to develop an adequate coral reef mapping system based on digital remote sensing, but are impeded by issues such as effects of the intervening water column and spectral distinction of bottom types. The two variables discussed, which will contribute to our understanding of the global role of coral reefs, are: 1) remote sensing of submerged coral reefs in general; and 2) remote sensing of coral bleaching in particular. A summary of radiative transfer theory is presented and case studies of attempts at mapping remotely the geographic extent and health of submerged ecosystems, as well as a discussion of the remote estimation of water depth and quality. Problems in the translation and delivery of information to the end user are presented, and possible solutions suggested.