Remineralization Of Organic Matter Research Articles

Biogeomorphic feedbacks and the ecosystem engineering of recently deglaciated terrain

Matthews’ 1992 geoecological model of vegetation succession within glacial forefields describes how following deglaciation the landscape evolves over time as the result of both biotic and abiotic factors, with the importance of each depending on the level of environmental stress within the system. We focus in this paper on how new understandings of abiotic factors and the potential for biogeomorphic feedbacks between abiotic and biotic factors makes further development of this model important. Disturbance and water dynamics are two abiotic factors that have been shown to create stress gradients that can drive early ecosystem succession. The subsequent establishment of microbial communities and vegetation can then result in biogeomorphic feedbacks via ecosystem engineering that influence the role of disturbance and water dynamics within the system. Microbes can act as ecosystem engineers by supplying nutrients (via remineralization of organic matter and nitrogen fixation), enhancing soil development, either decreasing (encouraging weathering) or increasing (binding sediment grains) geomorphic stability, and helping retain soil moisture. Vegetation can act as an ecosystem engineer by fixing nitrogen, enhancing soil development, modifying microbial community structure, creating seed banks, and increasing geomorphic stability. The feedbacks between vegetation and water dynamics in glacial forefields are still poorly studied. We propose a synthesized model of ecosystem succession within glacial forefields that combines Matthews’ initial geoecological model and Corenblit's model to illustrate how gradients in environmental stress combined with successional time drive the balance between abiotic and biotic factors and ultimately determine the successional stage and potential for biogeomorphic feedbacks.

Spatial variability in dissolved iron concentrations in the marginal and open waters of the Indian Ocean

We analyzed 28 full vertical profiles of dissolved iron (DFe) in the Indian Ocean (i.e., between 26°S – 20°N and 72°E – 105°E) during two research expeditions (SK-304: March–May 2013, SK-311: March–April 2014) as part of the GEOTRACES-India programme. Relatively high DFe concentrations in surface waters (≤10 m) were observed in the Arabian Sea (AS: 0.68 ± 0.03 nM, n = 2) and the Bay of Bengal (BoB: 0.44 ± 0.11 nM, n = 21) compared to the stations located south of the equator (0.27 ± 0.16 nM, n = 17). Higher DFe in the coastal stations is presumably sourced from the continental shelves. Depth profiles of DFe in the AS, BoB and Andaman Sea showed sub-surface maxima, coinciding with low dissolved oxygen (DO) concentrations. High DFe concentrations in sub-surface waters of the BoB and the Andaman Sea are attributed to desorption of soluble iron from resuspended sediments of the rivers and the remineralization of sinking particulate organic matter. We also observed a significant contribution of DFe from hydrothermal vents situated at the Central Indian ridge and subduction processes along the Java trench to pelagic waters of the Indian Ocean. Fe:C remineralization ratios of 3.92 ± 0.83, 5.88 ± 2.65, 8.96 ± 3.85 and 5.74 ± 3.06 μmol/ mol were observed in the Indian Ocean, BoB, AS and Andaman Sea, respectively. To assess the surface areas and deep water masses where DFe concentrations potentially limit phytoplankton growth (when reaching the surface) we subtracted the contribution of particulate organic matter remineralization to the DFe pool using the tracer Fe* (≈DFe–RFe:P(Phosphate)). Positive Fe* values in the intermediate waters suggest an external source for DFe, whereas negative Fe* values suggest the absence of such external inputs and/or removal by scavenging processes. Our results contribute to improved understanding of DFe distributions and their coupling with the ocean biogeochemical cycling of carbon and nitrogen in this region.

Oxygen Consumption and Organic Matter Remineralization in Two Subtropical, Eutrophic Coastal Embayments.

There is a strong need to understand sources of organic matter in coastal lagoons because these systems often have long water residence times, are susceptible to eutrophication, and display symptoms such as low-oxygen conditions. We found that integrated dissolved oxygen (DO) consumption in the water column accounted for 67-73% of total DO consumption in two eutrophic coastal lagoons (Baffin Bay and Oso Bay) in the northwestern Gulf of Mexico. The δ13C of particulate organic carbon (δ13CPOC) showed temporal variations that corresponded with hydrological condition changes in Baffin Bay but fewer temporal changes in Oso Bay, whereas the lower δ15NPON values in Baffin Bay indicated more agricultural influence than in Oso Bay, where urban sewage influences dominated. Based on closed-system incubation experiments, water-column respiration in Baffin Bay was driven by the respiration of a combination of phytoplankton, carbon from near-shore and benthic macrophytes, and other allochthonous organic carbon sources depending on hydrological conditions. However, respiration of algal carbon dominated DO consumption in Baffin Bay sediments. In comparison, Oso Bay water-column respiration was largely attributed to the degradation of phytoplankton, the growth of which was sustained by nutrient discharge from wastewater treatment plants in the watershed. In contrast to the water column, seagrass and saltmarsh carbon appeared to be the primary organic carbon source that drove DO consumption in Oso Bay sediments. These observations highlight the complexity of organic carbon sources that contribute to DO consumption in estuaries affected by human activities, especially in systems with long water residence times that can retain both organic matter and nutrients for extended periods of time.

Low-nutrient organic matter in the Sargasso Sea thermocline: A hypothesis for its role, identity, and carbon cycle implications

Despite slow nutrient supply to the subtropical surface ocean, its rates of annual inorganic carbon drawdown and net oxygen production are similar to those of nutrient-rich high latitude waters. This surprisingly rapid carbon drawdown, if due to the production and export of marine biomass, cannot be explained in terms of known nutrient supply mechanisms. Moreover, carbon budgets have failed to detect the export of this organic matter. One possible explanation is the export of nutrient-poor organic matter with a composition that avoids detection as sinking particles. We describe three signs of the decomposition of such organic matter in the shallow Sargasso Sea subsurface. First, summertime oxygen consumption at 80–400 m occurs without the rate of nitrate and phosphate production expected from the remineralization of marine biomass, matching the observed summertime mixed layer inorganic carbon drawdown. Second, a seasonal change in the 18O/16O of subsurface nitrate suggests summertime heterotrophic bacterial nitrate assimilation down to ~400 m, as may be required for the remineralization of nutrient-poor organic matter. Third, incubation of subsurface seawater leads to nitrate drawdown and heterotrophic bacterial growth, supporting the thermocline nitrate 18O/16O evidence for heterotrophic nitrate assimilation. These three pieces of evidence suggest the export of nutrient-poor organic matter from the surface at a rate adequate to explain net community production in the Sargasso Sea. We propose that transparent exopolymer particles or related compounds, generated by a nutrient-limited upper ocean ecosystem, comprise this nutrient-poor export, and that its properties cause its flux out of the euphotic zone to be underestimated by sediment traps. Such nutrient-poor organic matter would contribute little to fisheries, deep ocean carbon dioxide storage, or organic carbon burial, so that it may change our view of the significance of net community production in the subtropical ocean.

Impact of Seabed Resuspension on Oxygen and Nitrogen Dynamics in the Northern Gulf of Mexico: A Numerical Modeling Study

AbstractResuspension affects water quality in coastal environments by entraining seabed organic matter into the water column, which can increase remineralization, alter seabed fluxes, decrease water clarity, and affect oxygen and nutrient dynamics. Nearly all numerical models of water column biogeochemistry, however, simplify seabed and bottom boundary layer processes and neglect resuspension. Here we implemented HydroBioSed, a coupled hydrodynamic‐sediment transport‐biogeochemical model to examine the role of resuspension in regulating oxygen and nitrogen dynamics on timescales of a day to a month. The model was implemented for the northern Gulf of Mexico, where the extent of summertime hypoxia is sensitive to seabed and bottom boundary layer processes. Results indicated that particulate organic matter remineralization in the bottom water column increased by an order of magnitude during resuspension events. This increased sediment oxygen consumption and ammonium production, which were defined as the sum of seabed fluxes of oxygen and ammonium, plus oxygen consumption and ammonium production in the water column due to resuspended organic matter. The increases in remineralization impacted biogeochemical dynamics to a greater extent than resuspension‐induced seabed fluxes and oxidation of reduced chemical species. The effect of resuspension on bottom water biogeochemistry increased with particulate organic matter availability, which was modulated by sediment transport patterns. Overall, when averaged over the shelf and on timescales of a month in the numerical model, cycles of erosion and deposition accounted for about two thirds of sediment oxygen consumption and almost all of the sediment ammonium production.

Bioturbator‐stimulated loss of seagrass sediment carbon stocks

AbstractSeagrass ecosystems are highly productive, and are sites of significant carbon sequestration. Sediment‐held carbon stocks can be many thousands of years old, and persist largely due to sediment anoxia and because microbial activity is decreasing with depth. However, the carbon sequestered in seagrass ecosystems may be susceptible to remineralization via the activity of bioturbating fauna. Microbial priming is a process whereby remineralization of sediment carbon (recalcitrant organic matter) is stimulated by disturbance, i.e., burial of a labile source of organic matter (seagrass). We investigated the hypothesis that bioturbation could mediate remineralization of sediment carbon stocks through burial of seagrass leaf detritus. We carried out a 2‐month laboratory study to compare the remineralization (measured as CO2 release) of buried seagrass leaves (Zostera muelleri) to the total rate of sediment organic matter remineralization in sediment with and without the common Australian bioturbating shrimp Trypaea australiensis (Decapoda: Axiidea). In control sediment containing seagrass but no bioturbators, we observed a negative microbial priming effect, whereby seagrass remineralization was favored over sediment remineralization (and thus preserving sediment stocks). Bioturbation treatments led to a two‐ to five‐fold increase in total CO2 release compared to controls. The estimated bioturbator‐stimulated microbial priming effect was equivalent to 15% of the total daily sediment‐derived CO2 releases. We propose that these results indicate that bioturbation is a potential mechanism that converts these sediments from carbon sinks to sources through stimulation of priming‐enhanced sediment carbon remineralization. We further hypothesized that significant changes to seagrass faunal communities may influence seagrass sediment carbon stocks.

Seasonality of Nutrient Flux and Biogeochemistry in an Intertidal Aquifer

AbstractBiogeochemical reactions in coastal aquifers highly affect the nutrient flux associated with submarine groundwater discharge (SGD) to the ocean, which subsequently influences the oceanic environment and ecology. This study investigates a seasonal variation of SGD‐derived nutrient flux to the ocean and nutrient biogeochemistry in an intertidal aquifer of Tolo Harbor, Hong Kong. The results show that the inventory of NOx− and PO43− in the intertidal aquifer has a clear seasonality with a large inventory in summer, a small inventory in spring, and a median inventory in autumn and winter, respectively. Differently, the inventory of NH4+ is large in winter and summer and small in spring and autumn, which results from the coupled effects of seasonal change of both production and removal of NH4+ in the aquifer. The SGD‐derived nutrient (NH4+, NOx−, and PO43−) flux is the highest in summer (271.71, 24.86, and 116.66 mmol·day−1·(m coastline)−1) and is the lowest in spring (114.83, 1.70, and 20.26 mmol·day−1·(m coastline)−1). The majority of SGD‐derived nutrient flux is supported by the local remineralization of organic matter along with seawater infiltration. In autumn, the recharge of seawater induced by tidal pumping significantly shifts the biogeochemical balance of nutrients and is the major source of groundwater nutrients in the intertidal aquifer. Among the various nutrient fluxes (SGD, river discharge, atmospheric deposition, and benthic sediment diffusion) to Tolo Harbor, SGD‐derived PO43− flux is the second major source of seawater PO43− in addition to benthic sediment diffusion. The PO43− loading via SGD is of significance to the primary production in the phosphorus‐limited environment in Tolo Harbor. After considering the natural attenuation of nutrients in a sandy/silty beach aquifer, this study suggests the overestimation of SGD‐derived nutrient loading estimated previously that simply use average nutrient concentration of fresh SGD endmember and saline SGD endmember as the nutrient concentration of total SGD endmember.

Joint Effects of Extrinsic Biophysical Fluxes and Intrinsic Hydrodynamics on the Formation of Hypoxia West off the Pearl River Estuary

AbstractUsing field measurements and a process‐oriented three‐dimensional coupled physical‐biogeochemical numerical model, we investigated the physical and biogeochemical processes governing the bottom hypoxic zone west off the Pearl River estuary. The intensity and area of the hypoxia grew with increasing total nutrient input from the Pearl River that has increased continuously in recent decades. The hypoxic zone was formed and maintained largely associated with the stable water column where the stability was provided simultaneously by wind stress and freshwater discharge, favorable local hydrodynamics for flow convergence, and westward organic matter transport. Wind stress altered the stratification, while freshwater discharge changed the stratification and baroclinic velocity shear simultaneously. Two‐layered flow with a cyclonically rotating current around a coastal salient edge of the western shelf off the estuary hydrodynamically enhanced the local convergence, allowing sufficient residence time in the bottom for the remineralization of organic matter produced in the hypoxic zone and organic matter transported into the region. Our results suggest that a combination of unique local hydrodynamic feature and decomposition of organic matter in water column (and possibly in the sediment) are the cause of the formation and maintenance of the bottom hypoxia on the western shelf of the estuary during summer.

Modulation of the vertical particle transfer efficiency in the oxygen minimum zone off Peru

Abstract. The fate of the organic matter (OM) produced by marine life controls the major biogeochemical cycles of the Earth's system. The OM produced through photosynthesis is either preserved, exported towards sediments or degraded through remineralisation in the water column. The productive eastern boundary upwelling systems (EBUSs) associated with oxygen minimum zones (OMZs) would be expected to foster OM preservation due to low O2 conditions. But their intense and diverse microbial activity should enhance OM degradation. To investigate this contradiction, sediment traps were deployed near the oxycline and in the OMZ core on an instrumented moored line off Peru. Data provided high-temporal-resolution O2 series characterising two seasonal steady states at the upper trap: suboxic ([O2]<25 µmol kg−1) and hypoxic–oxic (15<[O2]<160 µmol kg−1) in austral summer and winter–spring, respectively. The OMZ vertical transfer efficiency of particulate organic carbon (POC) between traps (Teff) can be classified into three main ranges (high, intermediate, low). These different Teff ranges suggest that both predominant preservation (high Teff>50 %) and remineralisation (intermediate Teff 20 < 50 % or low Teff<6 %) configurations can occur. An efficient OMZ vertical transfer (Teff>50 %) has been reported in summer and winter associated with extreme limitation in O2 concentrations or OM quantity for OM degradation. However, higher levels of O2 or OM, or less refractory OM, at the oxycline, even in a co-limitation context, can decrease the OMZ transfer efficiency to below 50 %. This is especially true in summer during intraseasonal wind-driven oxygenation events. In late winter and early spring, high oxygenation conditions together with high fluxes of sinking particles trigger a shutdown of the OMZ transfer (Teff<6 %). Transfer efficiency of chemical elements composing the majority of the flux (nitrogen, phosphorus, silica, calcium carbonate) follows the same trend as for carbon, with the lowest transfer level being in late winter and early spring. Regarding particulate isotopes, vertical transfer of δ15N suggests a complex pattern of 15N impoverishment or enrichment according to Teff modulation. This sensitivity of OM to O2 fluctuations and particle concentration calls for further investigation into OM and O2-driven remineralisation processes. This should include consideration of the intermittent behaviour of OMZ towards OM demonstrated in past studies and climate projections.

Macroecological patterns of the phytoplankton production of polyunsaturated aldehydes

The polyunsaturated aldehydes (PUAs) are bioactive metabolites commonly released by phytoplankton species. Based primarily on laboratory experiments, PUAs have been implicated in deleterious effects on herbivores and competing phytoplankton species or in the regulation of the rates of bacterial organic matter remineralization; however, the role of the PUAs at an ecosystem level is still under discussion. Using data of PUA production in natural phytoplankton assemblages over a wide range of conditions, we analyzed macroecological patterns aiming for a comprehensive environmental contextualization that will further our understanding of the control and ecologic role played by these compounds. PUA composition changed from the predominance of decadienal in oligotrophy, octadienal in eutrophy, and heptadienal at intermediate conditions. The production of PUAs per unit biomass also showed a strong relationship with the trophic status, sharply increasing towards oligotrophic conditions and with small-sized cells reaching the highest production rates. High ratios of dissolved inorganic nitrogen to dissolved inorganic phosphorus also promoted PUA production, albeit to a considerably lesser extent. Although the allelopathic use of PUAs to outcompete other phytoplankton or reduce herbivory may be key in some environments and interactions, the macroecological patterns found here, showing higher production towards the poorest waters and among the small species typically populating these environments, support and link at the large scale the hypotheses of the nutrient-derived stress as driver for the production of PUAs together with the use of these compounds as boosters for the nutrient remineralization.

On the Properties of the Arctic Halocline and Deep Water Masses of the Canada Basin from Nitrate Isotope Ratios

AbstractNitrogen is a limiting nutrient for primary production in the western Arctic Ocean. Measurements of the nitrogen (15N/14N) and oxygen (18O/16O) isotope ratios of nitrate in the southeastern Beaufort Sea provide insight into biogeochemical cycling of nitrogen in the western Arctic Ocean. Nitrate O isotope ratios in the Pacific halocline evidence a highly regenerated reservoir. Coincident peaks in nutrient concentrations and reduced dissolved oxygen concentrations suggest that nitrate accrues from organic matter remineralization in bottom waters of the Chukchi shelf and that these ventilate the basin predominantly in summer, when isolated from the atmosphere. Preformed nitrate in Pacific Winter Water lacks 18O/16O elevation from nitrate assimilation, contrasting with preformed nitrate in other ocean regions. A reactive N deficit and elevated nitrate N isotope ratios in the Pacific halocline further indicate substantial N loss to coupled nitrification‐denitrification in shelf sediments upstream. In the Atlantic Water below, nitrate isotope ratios identify two distinct waters entering the Arctic at Fram Strait, from (1) the surface West Spitsbergen Current, bearing isotopic signatures akin to North Atlantic waters, and (2) deeper inflows of waters ventilated in the Nordic Seas, transporting nitrate O isotope ratios indicative of regenerated nitrate. Poorly ventilated Canada Basin Deep Water shows evidence of nominal accrual of remineralized products, and nitrate isotope ratios suggest an influence of slow benthic denitrification on the sea floor. The observations reveal that shelf processes have a disproportionate influence on tracer properties of the Pacific halocline, while those in Atlantic Water are dominated by processes in the Nordic Seas.

In situ, high-resolution time series of dissolved phosphate in Green Bay, Lake Michigan

Abstract In nearly every instance in which the environment has been sampled on a higher resolution in time or space, fundamental processes have come to light that were previously undetected or unobserved. In this study, an autonomous dissolved phosphate sensor was deployed at the Entrance Light station in lower Green Bay, Lake Michigan in 2012 and 2013. Hourly phosphate sensor measurements were compared with other real time sensor data to gain insights into the processes occurring at this site. Results showed that the water column at this location undergoes repeated stratification and turnover during the course of the summer. Often, the stratification results from intrusions of cold hypolimnetic bottom water from the north, while turnover is associated with significant northerly and/or easterly wind events. It was observed that, during calm periods, dissolved phosphate concentrations increased at a rate that was stoichiometrically consistent with the consumption of dissolved oxygen during the remineralization of organic matter; specifically, areal oxygen consumption rates ranged from 3.2 to 43 mmol m−2 d−1 and oxygen to phosphate ratios ranged from 120 to 210. At other times, the inverse relationship between dissolved oxygen and dissolved phosphate was not stoichiometrically linked; during these times, areal oxygen depletion rates ranged from 51 to 240 mmol m−2 d−1 and oxygen to phosphate ratios ranged from 260 to 2300. Future strategic deployment of multiple in situ dissolved phosphate and other nutrient sensors will enhance the understanding of nutrient cycling in this important aquatic system.

Significant chemical fluxes from natural terrestrial groundwater rival anthropogenic and fluvial input in a large-river deltaic estuary

The shores of the Pearl River estuary are home to 35 million people. Their wastes are discharged into the large river delta-front estuary (LDE), one of the most highly polluted systems in the world. Here we construct a radium reactive transport model to estimate the terrestrial groundwater discharge (TGD) into the highly urbanized Pearl River LDE. We find the TGD comprises only approximately 0.9% in term of water discharge compared to the river discharge. The TGD in the Pearl River LDE delivers significant chemical fluxes to the coast, which are comparable to the fluvial loadings from Pearl River and other world major rivers. Of particular importance is the flux of ammonium because of its considerable role in Pearl River estuary eutrophication and hypoxia. Unlike the ammonium in many other aquifers, the ammonium in the Pearl River aquifer system is natural and originated from organic matter remineralization by sulfate reduction in the extremely reducing environment. The TGD derived NH4+ is as much as 5% of the upstream Pearl River fluvial loading and 42% of the anthropogenic inputs. This high groundwater NH4+ flux may greatly intensify the eutrophication, shift the trophic states, and lead to alarming hypoxia within the affected ecosystems in the Pearl River LDE. The large TGD derived chemical fluxes will lead to deterioration of water and will potentially affect human health.

Nitrate Isotope Distribution in the Subarctic and Subtropical North Pacific

AbstractNitrogen and oxygen isotopic compositions of nitrate (δ15NNitrate and δ18ONitrate) were determined along 47°N in the subarctic North Pacific and 149°E in the western North Pacific. In the western subarctic gyre, known as a high‐nutrient, low‐chlorophyll region, the δ15NNitrate and the differences between δ15NNitrate and δ18ONitrate (herein Δ(15–18)) in the intermediate water were significantly lower than in the surrounding area. The 15N‐depleted nitrate was generated by nitrified nitrate from the remineralization of organic matter produced by the partial consumption of the surface nitrate pool. Between the western subarctic gyre and the Alaskan gyre, there was a 0.2‰ increase in δ15NNitrate and a 0.3‰ increase in Δ(15–18) in the intermediate water associated with a 7.2‐μM decrease in the nitrate concentration at the surface. Assuming Rayleigh distillation kinetics, the increase in utilization of the surface nitrate pool between the western subarctic gyre and the Alaskan gyre (from 29% to 85%) corresponds to a change in δ15N of organic matter from 2.6‰ to 4.9‰. The 15N enrichment of intermediate nitrate toward the east resulted from the increase in utilization. Moreover, the 15N‐depleted nitrate in the mixed‐layer water of the western subtropical gyre was affected by N2 fixation in the Kuroshio water, whereas the 15N‐enriched nitrate in the intermediate water at the western margin of North America was affected by water column denitrification. The δ15N sediment record in the western subarctic North Pacific likely reflects past changes in the high‐nutrient, low‐chlorophyll region but may also be controlled by water column denitrification and N2 fixation.

Simulation of Coastal Processes affecting pH with Impacts on Carbon and Nutrient Biogeochemistry

Naturally occurring microbial decomposition of organic matter (OM) in coastal marine environments cause increased acidity in deeper layers similar or even exceeding the future predictions for global ocean acidification (OA). Experimental studies in coastal areas characterized by increased inputs of OM and nutrients, coping with intermittent hypoxic/anoxic conditions, provide better understanding of the mechanisms affecting nutrients and carbon biogeochemistry under the emerging effects of coastal pH decrease. Laboratory CO2-manipulated microcosm experiments were conducted using seawater and surface sediment collected from the deepest part of Elefsis Bay (Saronikos Gulf, Eastern Mediterranean) focusing to study the co-evolution of processes affected by the decline of dissolved oxygen and pH induced by (a) OM remineralization and (b) the future anthropogenic increase of atmospheric CO2. Under more acidified conditions, a significant increase of total alkalinity was observed partially attributed to the sedimentary carbonate dissolution and the reactive nitrogen species shift towards ammonium. Νitrate and nitrite decline, in parallel with ammonium increase, demonstrated a deceleration of ammonium oxidation processes along with decrease in nitrate production. The decreased DIN:DIP ratio, the prevalence of organic nutrient species against the inorganic ones, the observations of constrained DON degradation and nitrate production decline and the higher DOC concentrations revealed the possible inhibition of OM decomposition under lower pH values. Finally, our results highlight the need for detailed studies of the carbonate system in coastal areas dominated by hypoxic/anoxic conditions, accompanied by other biogeochemical parameters and properly designed experiments to elucidate the processes sequence or alterations due to pH reduction.

Deepwater Expansion and Enhanced Remineralization in the Eastern Equatorial Pacific During the Last Glacial Maximum

AbstractPublished estimates of the radiocarbon content of middepth waters suggest a decrease in ventilation in multiple locations during the last glacial maximum (LGM; 24.0–18.1 ka). Reduced glacial ventilation would have allowed respired carbon to accumulate in those waters. A subsequent deglacial release of this respired carbon reservoir to the atmosphere could then account for the observed increases in atmospheric CO2 and decline in atmospheric radiocarbon content. However, age model error and a release of 14C‐depleted mantle carbon have also been cited as possible explanations for the observed middepth radiocarbon depletions, calling into question the deep ocean's role in storing respired carbon during the LGM. Joint measurements of benthic foraminiferal carbon isotope values (δ13C) and cadmium/calcium (Cd/Ca) ratios provide a method for isolating the air‐sea component of a water mass from changes in remineralization. Here we use benthic foraminiferal δ13C and Cd/Ca records from the eastern equatorial Pacific to constrain changes in remineralization and water‐mass mixing over the last glacial‐interglacial transition. These records are complemented with elemental measurements of the authigenic coatings of foraminifera to monitor postdepositional changes in bottom water properties. Our results suggest an increase of deep waters at midwater depths consistent with a shoaling of the boundary between the upper and lower branches of Southern Ocean overturning circulation. Additionally, our records demonstrate increased organic matter remineralization in middepth waters during the LGM, suggesting that respired carbon did accumulate in middepth waters under periods of reduced ventilation.

Late inception of a resiliently oxygenated upper ocean.

Rising oceanic and atmospheric oxygen levels through time have been crucial to enhanced habitability of surface Earth environments. Few redox proxies can track secular variations in dissolved oxygen concentrations around threshold levels for metazoan survival in the upper ocean. We present an extensive compilation of iodine-to-calcium ratios (I/Ca) in marine carbonates. Our record supports a major rise in the partial pressure of oxygen in the atmosphere at ~400 million years (Ma) ago and reveals a step change in the oxygenation of the upper ocean to relatively sustainable near-modern conditions at ~200 Ma ago. An Earth system model demonstrates that a shift in organic matter remineralization to greater depths, which may have been due to increasing size and biomineralization of eukaryotic plankton, likely drove the I/Ca signals at ~200 Ma ago.

Authigenic carbonate formation rates in marine sediments and implications for the marine δ13C record

Carbon isotope (δ13C) variations measured in carbonates have been attributed to large-scale phenomena throughout Earth history, such as changes in atmospheric oxygen or global glaciations. These interpretations follow from a model wherein the δ13C of marine dissolved inorganic carbon (DIC) is controlled by the relative sedimentary burial rates of biogenic carbonate (BC) and organic carbon (OC). A new model proposes authigenic carbonate (AC) as a third major sedimentary C pool, implying that δ13C anomalies are not necessarily indicative of extreme changes in the global carbon cycle and/or atmospheric oxygen. Two conditions are required for AC formation to significantly alter bulk carbonate δ13C: the AC isotopic composition must be at least ∼3‰ different from that of BC and the AC/BC ratio must be >0.1. We use pore fluid Ca and Sr concentrations to estimate rates of AC formation in Late Cenozoic marine sediments, then calculate relative fractions of AC, OC, and BC. Today AC is not expected to constitute a significant fraction of total sedimentary carbon (AC+OC+BC) globally; however, there are modern sites where local conditions promote elevated AC/BC and anaerobic metabolisms can alter the δ13C of pore fluids. We investigate these sites to determine what conditions might enable AC to alter δ13C of marine DIC. We find there is very little net addition of AC relative to BC, but large quantities of AC form today across many settings via recrystallization. In settings where remineralization of organic matter causes recrystallized carbonate to form with modified δ13C, AC/BC is generally too low for this recrystallization to significantly shift the δ13C of the bulk carbonate. However, exceptions are found in sites with very low BC and extensive methane oxidation, suggesting that this environment type would need to be globally extensive in the past in order for AC formation to change the δ13C of marine DIC.

Effects of sandfish (Holothuria scabra) removal on shallow-water sediments in Fiji.

Sea cucumbers play an important role in the recycling and remineralization of organic matter (OM) in reef sands through feeding, excretion, and bioturbation processes. Growing demand from Asian markets has driven the overexploitation of these animals globally. The implications of sea cucumber fisheries for shallow coastal ecosystems and their management remain poorly understood. To address this knowledge gap, the current study manipulated densities of Holothuria scabra within enclosures on a reef flat in Fiji, between August 2015 and February 2016, to study the effects of sea cucumber removal on sedimentary function as a biocatalytic filter system. Three treatments were investigated: (i) high density (350 g m−2 wet weight; ca. 15 individuals); (ii) natural density (60 g m−2; ca. 3 individuals); and (iii) exclusion (0 g m−2). Quantity of sediment reworked through ingestion by H. scabra, grain size distribution, O2 penetration depth, and sedimentary oxygen consumption (SOC) were quantified within each treatment. Findings revealed that the natural population of H. scabra at the study site can rework ca. 10,590 kg dry sediment 1,000 m−2 year−1; more than twice the turnover rate recorded for H. atra and Stichopus chloronotus. There was a shift towards finer fraction grains in the high treatment. In the exclusion treatment, the O2 penetration depth decreased by 63% following a 6 °C increase in water temperature over the course of two months, while in the high treatment no such change was observed. SOC rates increased ca. two-fold in the exclusion treatment within the first month, and were consistently higher than in the high treatment. These results suggest that the removal of sea cucumbers can reduce the capacity of sediments to buffer OM pulses, impeding the function and productivity of shallow coastal ecosystems.

Macronutrient and carbon supply, uptake and cycling across the Antarctic Peninsula shelf during summer.

The West Antarctic Peninsula shelf is a region of high seasonal primary production which supports a large and productive food web, where macronutrients and inorganic carbon are sourced primarily from intrusions of warm saline Circumpolar Deep Water. We examined the cross-shelf modification of this water mass during mid-summer 2015 to understand the supply of nutrients and carbon to the productive surface ocean, and their subsequent uptake and cycling. We show that nitrate, phosphate, silicic acid and inorganic carbon are progressively enriched in subsurface waters across the shelf, contrary to cross-shelf reductions in heat, salinity and density. We use nutrient stoichiometric and isotopic approaches to invoke remineralization of organic matter, including nitrification below the euphotic surface layer, and dissolution of biogenic silica in deeper waters and potentially shelf sediment porewaters, as the primary drivers of cross-shelf enrichments. Regenerated nitrate and phosphate account for a significant proportion of the total pools of these nutrients in the upper ocean, with implications for the seasonal carbon sink. Understanding nutrient and carbon dynamics in this region now will inform predictions of future biogeochemical changes in the context of substantial variability and ongoing changes in the physical environment.This article is part of the theme issue ‘The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change’.