Haploidentical hematopoietic stem cell transplantation (haplo-HSCT) is an effective therapeutic strategy for transplant candidates lacking an MHC-matched donor. Removal of T cells from the graft is required, however, to prevent lethal graft-versus-host disease (GvHD). Removal of all T cells increases the risk of graft rejection, relapse, and viral and other opportunistic infections. Several strategies have been used to overcome these barriers, but it is difficult to develop a single T-cell manipulation that both eliminates alloreactivity and spares T cells representing all the available anti-viral and anti-tumor specificities in the donor's peripheral blood. We determined whether alloreplete haploidentical T cells expressing the human caspase-9 (iC9) safety gene can produce immune reconstitution in patients undergoing haplo-HSCT, and whether any resultant GvHD from these alloreplete cells can be controlled by administration of a dimerizing drug (AP1903). After transplant, patients were infused with iC9-T cells using a dose-escalation schedule from 1×104 cells/kg to 5×106 cells/kg. We measured the subsequent immune reconstitution of iC9-T cell recipients. Subjects received dimerizing drug (AP1903) if they developed GvHD. Here we reported ten patients (median age, 13 years; range, 3 – 50 years) who received increasing numbers of alloreplete donor-T cells expressing iC9 (iC9-T). All patients receiving >104 alloreplete iC9 T-lymphocytes/kg engrafted with these cells. There was rapid reconstitution of immune responses toward EBV, CMV, HHV6, VZV and BK viruses, and concomitant control of any active infections. Four patients received a single dose of AP1903, and 85-95% of circulating Cd3+CD19+ T cells were eliminated within 30 minutes of dimerizer infusion, with no recurrence of GvHD within 90 days. In one of these patients with an associated cytokine release syndrome (CRS- hyperpyrexia, high levels of pro-inflammatory cytokines and rash), symptoms and signs of this disorder resolved within 2 hours of dimerizer infusion. One patient with VZV meningitis and acute GvHD had iC9-T cells present in the CSF which were reduced by >90% after dimerizing drug. Notably, virus-specific T cells recovered even after administration of AP1903 and continued to protect the patients against infection. Hence alloreplete iC9-T cells can reconstitute immunity post-transplant and can be eliminated both from peripheral blood and CNS by administration of dimerizing drug, leading to a rapid resolution of GvHD and CRS. The approach may therefore be useful for the rapid and effective treatment of toxicities associated with infusion of engineered T lymphocytes.