Related Genera Research Articles

Sodium acetate and sodium butyrate attenuate diarrhea in yak calves by regulating gut microbiota and metabolites

Diarrhea is a severe issue in calves that causes fertility problems and economic issues worldwide. Sodium acetate/sodium butyrate (SA/SB) alleviates diarrhea in mice; however, little information is available about the preventive effect of SA/SB on diarrheic yak calves living on the Tibet plateau. Yak calves (n = 19) of age ≥4 months and weight 37 ± 2 Kg were randomly divided into control (C, n = 10) and supplement groups (S, n = 9). Yaks belonging to the supplement group were given sodium butyrate (10 g/kg) and sodium acetate (5 g/kg) for 28 days, along with normal feed, seasonal grasses, pasture, and water. The blood and fecal samples from yak calves were collected for assessment of antioxidant capacity, inflammatory cytokines, microbiome, and short-chain fatty acids (SCFAs) concentration analysis. Results of this study revealed that a lower diarrhea rate, higher weight, and net weight gain were recorded in yaks belonging to group S supplemented with SA/SB. Similarly, increased antioxidant capacity with higher levels of T-AOC, SOD, and GSH-px and decreased inflammatory reactions by decreasing both TNF-α and IL-1β concentrations were recorded in yaks of group S. The concentration of SCFAs was significantly higher (p < 0.05) in yaks from group S than group C. Microbiome analysis revealed that 8 phyla and 54 genera were significantly different (p < 0.05) in both yak groups, with increased probiotics (Akkermansia, Oscillospira), SCFAs producing genera (Oscillospira, ASF356, Anaerosporobacter and Phascolarctobacterium), and decreased inflammatory related genus (Flavonifractor, Fournierella) and harmful bacteria (Oscillibacter, Achromobacter) in group S. In conclusion, the results demonstrated that SA and SB could decrease diarrhea rates in yak calves on the plateau via increasing antioxidant ability and SCFAs, while decreasing inflammatory responses in yaks by moderating gut microbiota. The current results provide new insights for the prevention and treatment of diarrhea in yaks.

A newly recorded genus Microdynerus Thomson, 1874 and a review of its related genus Leptochilus de Saussure, 1853 (Hymenoptera, Vespidae, Eumeninae) from China

In this paper, the genus MicrodynerusThomson 1874 is newly recorded from China with one species Microdynerus (Pseudomicrodynerus) parvulus (Herrich-Schäeffer, 1838). Furthermore, a total of ten species of the genus Leptochilus de Saussure is recorded from China, including one new species, i.e., Leptochilus (Lionotulus) angulussp. nov., which is described and illustrated in detail. Of the remaining nine Leptochilus species three are recorded here for the first time from China, i.e., L. (Lionotulus) argentifrons (Kostylev, 1935), L. (Lionotulus) callidus (Kostylev, 1940), and L. (Lionotulus) locuples Giordani Soika, 1970, whereas the remaining six species, i.e., L. (Lionotulus) chinensis Gusenleitner, 2001, L. (Lionotulus) gobicus (Kostylev, 1940), L. (Lionotulus) habyrganus Kurzenko, 1977, L. (Lionotulus) incertus (Kostylev, 1940), L. (Lionotulus) kozlovi Kurzenko, 1977, and L. (Neoleptochilus) tibetanus Giordani Soika, 1966, have been documented from China before. All treated species are diagnosed and illustrated. Finally, a key to the Chinese species of the two related genera is provided.

Phylogeny, biogeography, and character evolution of Anaphalis (Gnaphalieae, Asteraceae).

The HAP clade, mainly including Helichrysum Mill, Anaphalis DC., and Pseudognaphalium Kirp., is a major component of tribe Gnaphalieae (Asteraceae). In this clade, Anaphalis represents the largest genus of Asian Gnaphalieae. The intergeneric relationships among Anaphalis and its related genera and the infrageneric taxonomy of this genus are complex and remain controversial. However, there are few studies that have focused on these issues. Herein, based on the current most comprehensive sampling of the HAP clade, especially Anaphalis, we conducted phylogenetic analyses using chloroplast (cp) genome and nuclear ribosomal DNA (nrDNA) to evaluate the relationships within HAP clade, test the monophyly of Anaphalis, and examine the infrageneric taxonomy of this genus. Meanwhile, the morphological characters were verified to determine the circumscription and infrageneric taxonomy system of Anaphalis. Additionally, the biogeographical history, diversification processes, and evolution of crucial morphological characters were estimated and inferred. Our phylogenetic analyses suggested that Anaphalis is polyphyletic because it nested with Helichrysum and Pseudognaphalium. Two and four main clades of Anaphalis were identified in cp genome and nrDNA trees, respectively. Compared with nrDNA trees, the cp genome trees were more effective for phylogenetic resolution. After comprehensively analyzing morphological and phylogenetic evidence, it was concluded that the achene surface ornamentation and leaf base showed less homoplasy and supported the two Anaphalis lineages that were inferred from cp genome. Our biogeographical analyses based on cp genome indicated that HAP clade underwent rapid diversification from late Miocene to Pliocene. The two Anaphalis lineages appeared to have originated in Africa, then spread to Western and Southern Asia, and subsequently moved into Southwestern China forming a diversity center. The dispersal patterns of the two Anaphalis lineages were different. One dispersed around the world, except in Africa and South America. The other one dispersed to Eastern and Southeastern Asia from the ancestral origin region.

Decoding the Genomic Profile of the Halomicroarcula Genus: Comparative Analysis and Characterization of Two Novel Species.

The genus Halomicroarcula, classified within the family Haloarculaceae, presently comprises eight haloarchaeal species isolated from diverse saline habitats, such as solar salterns, hypersaline soils, marine salt, and marine algae. Here, a detailed taxogenomic study and comparative genomic analysis of the genus Halomicroarcula was carried out. In addition, two strains, designated S1CR25-12T and S3CR25-11T, that were isolated from hypersaline soils located in the Odiel Saltmarshes in Huelva (Spain) were included in this study. The 16S rRNA and rpoB' gene sequence analyses affiliated the two strains to the genus Halomicroarcula. Typically, the species of the genus Halomicroarcula possess multiple heterogeneous copies of the 16S rRNA gene, which can lead to misclassification of the taxa and overestimation of the prokaryotic diversity. In contrast, the application of overall genome relatedness indexes (OGRIs) augments the capacity for the precise taxonomic classification and categorization of prokaryotic organisms. The relatedness indexes of the two new isolates, particularly digital DNA-DNA hybridization (dDDH), orthologous average nucleotide identity (OrthoANI), and average amino acid identity (AAI), confirmed that strains S1CR25-12T (= CECT 30620T = CCM 9252T) and S3CR25-11T (= CECT 30621T = CCM 9254T) constitute two novel species of the genus Halomicroarcula. The names Halomicroarcula saliterrae sp. nov. and Halomicroarcula onubensis sp. nov. are proposed for S1CR25-12T and S3CR25-11T, respectively. Metagenomic fragment recruitment analysis, conducted using seven shotgun metagenomic datasets, revealed that the species belonging to the genus Halomicroarcula were predominantly recruited from hypersaline soils found in the Odiel Saltmarshes and the ponds of salterns with high salt concentrations. This reinforces the understanding of the extreme halophilic characteristics associated with the genus Halomicroarcula. Finally, comparing pan-genomes across the twenty Halomicroarcula and Haloarcula species allowed for the identification of commonalities and differences between the species of these two related genera.

Investigation of quality related process variables in pultrusion by correlation of numerical and experimental data with application of an inline data acquisition system

The pultrusion process is an efficient technology for the continuous production of fiber reinforced polymers. While the process is industrially established for decades, the interactions between process parameters and material quality of pultruded profiles are – despite various studies – not fully understood yet. Due to the complexity of the process and the variety of materials, it is difficult to identify generic and quality related process relationships. Based on a novel multidisciplinary approach, this paper investigates the correlation between simulation data and experimental based process- and quality data. Therefore, a pultrusion-specific epoxy resin is characterized and modelled and thermo-chemical process simulations are performed. A for pultrusion unique inline quality assurance and data acquisition system was developed, built-up and applied during the production of a rectangular, glass-fiber reinforced profile. The analyzed data involves cure variables, die pressure, temperature, pull-speed and -force, ultrasonic data, surface waviness and roughness and void content. As main result, the position of gelation at the profile’s centerline in respect to the die length was determined as important criteria to maintain a sufficient material quality. Furthermore, a correlation between the die pressure and an insufficient degree of cure was identified. No significant influences of the process parameters on the material quality could be observed as long as the process stayed in a stable process window. This indicates that no severe quality losses have to be expected at higher production rates. The methods and results developed in this work are applicable for the implementation in an automated process control in pultrusion.

Microbiological and chemical characteristics of porkfish inasua, traditional fish fermented from Maluku, Indonesia

Abstract. Mahulette F. 2023. Microbiological and chemical characteristics of porkfish inasua, traditional fish fermented from Maluku, Indonesia. Biodiversitas 25: 1-8. Porkfish inasua consisted of two types, i.e., with and without coconut sap. The research aimed to analyze the microbiological and chemical characteristics of two types of porkfish inasua. The microbiological characteristics are used to determine the role of microbes and product safety whereas the chemical characteristics, including proximate composition, amino acids, and fatty acids contents can determine the nutritional value for consumption. The sample of porkfish inasua was taken from traditional producers in Layeni, Teon, Nila, and Serua (TNS) Islands, Maluku, Indonesia. The microbiological analysis was done using the plate count method. From the measurement, the total number of halotolerant and coliform bacterial in porkfish inasua without sap were 6.2 log cfu/g and 6.1 log cfu/g, respectively. In comparison, the total of Bacillus and related genera in porkfish inasua with sap was 5.9 log cfu/g at the end of fermentation. The fat content of both types of inasua was around 17%. The total amino acids and fatty acids contents of porkfish inasua without sap at the end of fermentation were 15.31 and 57.08%, while porkfish inasua with sap were 15.85 and 63.81%, respectively. The dominant bacteria found in porkfish inasua without sap was Staphylococcus saprophyticus, while porkfish inasua with sap was Bacillus cereus. These two bacteria play a role in fermentation so porkfish inasua was safe for consumption. Generally, chemical characteristics of porkfish inasua with sap were better than those of porkfish inasua without sap, but statistically, it was not significantly different. This research can improve the quality of porkfish inasua as local fermented fish products in Maluku.

Characterization of Four Complete Mitogenomes of Monolepta Species and Their Related Phylogenetic Implications.

Monolepta is one of the diverse genera in the subfamily Galerucinae, including 708 species and 6 sub-species worldwide. To explore the information on the mitogenome characteristics and phylogeny of the section "Monoleptites", especially the genus Monolepta, we obtained the newly completed mitochondrial genomes (mitogenomes) of four Monolepta species using high-throughput sequencing technology. The lengths of these four new mitochondrial genomes are 16,672 bp, 16,965 bp, 16,012 bp, and 15,866 bp in size, respectively. All four mitochondrial genomes include 22 transfer RNA genes (tRNAs), 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), and one control region, which is consistent with other Coleoptera. The results of the nonsynonymous with synonymous substitution rates showed that ND6 had the highest evolution rate, while COI displayed the lowest evolution rate. The substitution saturation of three datasets (13 PCGs_codon1, 13 PCGs_codon2, 13 PCGs_codon3) showed that there was no saturation across all datasets. Phylogenetic analyses based on three datasets (ND1, 15 genes of mitogenomes, and 13 PCGs_AA) were carried out using maximum likelihood (ML) and Bayesian inference (BI) methods. The results showed that mitogenomes had a greater capacity to resolve the main clades than the ND1 gene at the suprageneric and species levels. The section "Monoleptites" was proven to be a monophyletic group, while Monolepta was a non-monophyletic group. Based on ND1 data, the newly sequenced species whose antennal segment 2 was shorter than 3 were split into several clades, while, based on the mitogenomic dataset, the four newly sequenced species had close relationships with Paleosepharia. The species whose antennal segment 2 was as long as 3 were split into two clades, which indicated that the characteristic of "antennal segment 2 as long as 3" of the true "Monolepta" evolved multiple times in several subgroups. Therefore, to explore the relationships among the true Monolepta, the most important thing is to perform a thorough revision of Monolepta and related genera in the future.

Halospeciosus flavus gen. nov., sp. nov. and Haladaptatus caseinilyticus sp. nov., halophilic archaea isolated from saline soil of an inland solar saltern and offshore sediment.

Two novel halophilic archaeal strains (XZGYJ-43T and ZJ1T) were isolated from Mangkang ancient solar saltern (Tibet, PR China) and Zhujiang river inlet (Guangdong, PR China), respectively. The comparison of the 16S rRNA gene sequences revealed that strain XZGYJ-43T is related to the current species of the family Halobacteriaceae (89.2-91.7% similarity) and strain ZJ1T showed 94.7-98.3% similarity to the current species of the genus Haladaptatus. Phylogenetic analyses based on 16S rRNA genes, rpoB' genes and genomes indicated that strain XZGYJ-43T is separate from the related genera, Halocalculus, Salarchaeum and Halarchaeum of the family Halobacteriaceae, and strain ZJ1T tightly clusters with the current species of the genus Haladaptatus. The average nucleotide identity, digital DNA-DNA hybridization and average amino acid identity values between strain XZGYJ-43T and the current species of the family Halobacteriaceae were 71-75, 20-25 and 59-68 %, and these values between strain ZJ1T and the current species of the genus Haladaptatus were 77-81, 27-32 and 76-82 %, respectively, clearly below the thresholds for prokaryotic species demarcation. These two strains could be distinguished from their relatives according to differential phenotypic characteristics. The major polar lipids of strain XZGYJ-43T were phosphatidic acid (PA), phosphatidylglycerol (PG), phosphatidylglycerol phosphate methyl ester (PGP-Me), mannosyl glucosyl diether (DGD-1; DGD-PA) and sulphated mannosyl glucosyl diether (S-DGD-1; S-DGD-PA), and those of strain ZJ1T were PA, PG, PGP-Me, DGD-PA, S-DGD-1 (S-DGD-PA) and sulphated galactosyl mannosyl glucosyl diether. Based on phenotypic, phylogenetic and genomic data, strain XZGYJ-43T (=CGMCC 1.13890T=JCM 33735T) represents a novel species of a new genus within the family Halobacteriaceae, and strain ZJ1T (=CGMCC 1.18785T=JCM 34917T) represents a novel species of the genus Haladaptatus, for which the names Halospeciosus flavus gen. nov., sp. nov. and Haladaptatus caseinilyticus sp. nov. are proposed, respectively.

The ribosomal transcription units of five echinostomes and their taxonomic implications for the suborder Echinostomata (Trematoda: Platyhelminthes).

Five newly obtained nuclear ribosomal transcription unit (rTU) sequences from Echinostomatidae and Echinochasmidae are presented. The inter- and intrafamilial relationships of these and other families in the suborder Echinostomata are also analyzed. The sequences obtained are the complete rTU of Artyfechinostomum malayanum (9,499bp), the near-complete rTU of Hypoderaeum conoideum (8,076bp), and the coding regions (from 5'-terminus of 18S to 3'-terminus of 28S rRNA gene) in Echinostoma revolutum (6,856bp), Echinostoma miyagawai (6,854bp), and Echinochasmus japonicus (7,150bp). Except for the longer first internal transcribed spacer (ITS1) in Echinochasmus japonicus, all genes and spacers were almost identical in length. Comprehensive maximum-likelihood phylogenies were constructed using the PhyML software package. The datasets were either the concatenated 28S + 18S rDNA sequences (5.7-5.8kb) from 60 complete rTUs of 19 families or complete 28S sequences only (about 3.8-3.9kb) from 70 strains or species of 22 families. The phylogenetic trees confirmed Echinostomatoidea as monophyletic. Furthermore, a detailed phylogeny constructed from alignments of 169 28S D1-D3 rDNA sequences (1.1-1.3kb) from 98 species of 50 genera of 10 families, including 154 echinostomatoid sequences (85 species/42 genera), clearly indicated known generic relationships within Echinostomatidae and Echinochasmidae and relationships of families within Echinostomata and several other suborders. Within Echinostomatidae, Echinostoma, Artyfechinostomum, and Hypoderaeum appeared as monophyletic, while Echinochasmus (Echinochasmidae) was polyphyletic. The Echinochasmidae are a sister group to the Psilostomidae. The datasets provided here will be useful for taxonomic reappraisal as well as studies of evolutionary and population genetics in the superfamily Echinostomatoidea, the sole superfamily in the suborder Echinostomata.

Phylogeny, adaptive evolution, and taxonomy of Acronema (Apiaceae): evidence from plastid phylogenomics and morphological data.

The genus Acronema, belonging to Apiaceae, includes approximately 25 species distributed in the high-altitude Sino-Himalayan region from E Nepal to SW China. This genus is a taxonomically complex genus with often indistinct species boundaries and problematic generic delimitation with Sinocarum and other close genera, largely due to the varied morphological characteristics. To explore the phylogenetic relationships and clarify the limits of the genus Acronema and its related genera, we reconstructed a reliable phylogenetic framework with high support and resolution based on two molecular datasets (plastome data and ITS sequences) and performed morphological analyses. Both phylogenetic analyses robustly supported that Acronema was a non-monophyletic group that fell into two clades: Acronema Clade and East-Asia Clade. We also newly sequenced and assembled sixteen Acronema complete plastomes and performed comprehensively comparative analyses for this genus. The comparative results showed that the plastome structure, gene number, GC content, codon bias patterns were high similarity, but varied in borders of SC/IR and we identified six different types of SC/IR border. The SC/IR boundaries of Acronema chienii were significantly different from the other Acronema members which was consistent with the type VI pattern in the genus Tongoloa. We also identified twelve potential DNA barcode regions (ccsA, matK, ndhF, ndhG, psaI, psbI, rpl32, rps15, ycf1, ycf3, psaI-ycf4 and psbM-trnD) for species identification in Acronema. The molecular evolution of Acronema was relatively conservative that only one gene (petG) was found to be under positive selection (ω = 1.02489). The gene petG is one of the genes involved in the transmission of photosynthetic electron chains during photosynthesis, which plays a crucial role in the process of photosynthesis in plants. This is also a manifestation of the adaptive evolution of plants in high-altitude areas to the environment. In conclusion, our study provides novel insights into the plastome adaptive evolution, phylogeny, and taxonomy of genus Acronema.

Cytospora: an important genus of canker pathogens

Cytospora species have commonly been reported as important plant pathogenic fungi with wide host ranges and geographic distributions. With the increase in the number of cryptic species being described, a comprehensive global taxonomic revision of the genus Cytospora is required. The present study includes 399 isolates from 32 countries. These isolates were subjected to DNA sequence analysis for five genomic loci (ITS, act1, rpb2, tef1-α and tub2). Based on these data, it could be confirmed that Cytospora, Leucostoma, Valsa, Valsella and Valseutypella are congeneric. Furthermore, 111 species of Cytospora could also be reassessed, 44 species and four combinations newly introduced, and new typifications proposed for a further three species. Three asexual morphological groups (including 13 asexual morphological types) and three sexual morphological groups (including eight sexual morphological types) were designated. The present study explored the species diversity of Cytospora and re-evaluated the identity of all cultures in the Westerdijk Fungal Biodiversity Institute (Utrecht, The Netherlands) that were deposited as either Cytospora or as one of its related genera. This is the most comprehensive phylogenetic analysis thus far conducted on Cytospora and the results contribute to an increased understanding of the taxonomy of these important fungi. It is also hoped that the findings will lead to improved management strategies for diseases associated Cytospora species.

Arthrocatenales, a new order of extremophilic fungi in the Dothideomycetes.

The widely treated order Capnodiales is one of the most important orders in the class Dothideomycetes. Recently, the order Capnodiales s. lat. was reassessed and split into seven orders (Capnodiales s. str., Cladosporiales, Comminutisporales, Mycosphaerellales, Neophaeothecales, Phaeothecales and Racodiales) based on multi-locus phylogeny, morphology and life strategies. In this study, two Arthrocatena strains isolated from sooty mould communities on the leaves of Tiliacordata and needles of Pinusnigra in southern Poland were analyzed. Multi-locus phylogenetic analyses (ITS-LSU-SSU-rpb2-tef1) along with morphological examination showed that they belong to Capnobotryellaantalyensis, which represents a sister taxon to Arthrocatenatenebrosa. Capnobotryellaantalyensis is a rock-inhabiting fungus described from Turkey. The following new combination is proposed: Arthrocatenaantalyensis. Phylogenetic analyses also showed that Arthrocatena and related genus Hyphoconis, both known previously only from rocks, form a sister lineage to orders Cladosporiales and Comminutisporales. The new order Arthrocatenales and new family Arthrocatenaceae are proposed to this clade. Representatives of this order are extremophilic fungi that live on rocks and in sooty mould communities.

Field-based generic empirical flame length–fireline intensity relationships for wildland surface fires

Background Fireline intensity (If) quantifies the power of the fireline and is used for various purposes. If and flame length (Lf) are relatable to each other using an empirical power function, which has been considered fuel-specific. Aims The aim of this study was to develop generic Lf − If relationships based on a robust set of field head fires from the literature (n = 797) conducted worldwide in forest, shrubland and grassland. Methods Lf was determined from the base of the fuel bed for comparability across fires in different fuel heights, and the effect of vegetation type was examined. Key results Although If could be approximately described using the same function in forest and shrubland, fires in grassland required different fitted coefficients; we speculate that fuel particles’ surface area-to-mass ratio is the main fuel metric influencing flame structure. Conclusions Fuel-generic relationships for If are reasonably accurate and encompass the high end of surface fire If. Previous studies suggested their unviability, most likely because of limitations in the number of observations and data ranges, difficulty in objectively measuring Lf and variation in Lf definition. Implications The generic relationships presented in this work will be of interest for research and management purposes when specific models for If are non-existent.

The librettos of Moniuszko’s operas and the European literary tradition: a comparative perspective on the opposition between serious drama and comedy

The aim of this study is to indicate several features of serious drama and comedy proper to Moniuszko’s operatic output and to describe them within the context of European points of reference (Pierre de Beaumarchais, Alfred de Musset, Jane Austen, Italian librettists). The network of generic and intertextual relationships shows that an important feature of Moniuszko librettos is not their supposed closure within the circle of national inspiration, but on the contrary – a seemingly insatiable openness to the most valuable areas of foreign legacies. The consistent comparison of comic and serious works in a single study also reveals an affinity between the issues at the heart of Moniuszko’s musical dramas, regardless of the tone of particular works. Moniuszko’s oeuvre, both in its comical and serious aspects, reflects, in different ways, one of the themes that has recurred in Europe after cataclysms, such as the holy wars of the Renaissance, the French Revolution (or the Partitions of Poland during the same period) and the conflicts of the twentieth century. One issue at the core of Polish opera turns out to be the disintegration of the social order and the transition to its opposite – the sudden or gradual, but ineluctable movement from harmony to confusion and violence-filled chaos. Halka and The Pariahforge models of a community based on the exploitation of the weak by the strong. Highlighted are instances of individuals refusing to conform to the anti-order. In the comic variant of Moniuszko’s output, meanwhile (The Haunted Manor, The Countess), the relationship between the order and its contradiction takes on the form of an unjustified renouncing of communal values. At the same time, the comparison between serious and comical works refutes the thesis that Moniuszko was an unequivocal eulogist of an ethics based on the unconditional belonging to a national community.

Lost companions: a new quill mite species and its possible coextinction with the Carolina parakeet.

Investigations of the parasites associated with extinct avian species provide unique insights into the ecology and evolution of both hosts and their parasitic counterparts. In the present paper, a new quill mite species, Peristerophila conuropsis sp. n., belonging to the family Syringophilidae (Prostigmata: Cheyletoidea) is described from the Carolina parakeet Conuropsis carolinensis Linnaeus (Psittaciformes: Psittacidae). This new species was collected from museum dry skin of the Carolina parakeet, the only native representative of the Psittacidae in the United States, which was an abundant resident of the southeastern and midwestern states and has been extinct in the beginning of the 20th century. Comment on the current taxonomic state and host associations of the genus Peristerophila are provided. Based on the host associations and habitats occupied by Peristerophila and related genera on parrots, it is hypothesized with the high probability that P. conuropsis has been extinct along with its host.

An insight into the genus Phytophthora (Peronosporaceae:Oomycota)

The genus Phytophthora, a group of hemibiotrophic species of the Phylum Oomycota, is considered one of the most economically important plant pathogens. Over the last few decades, the number of Phytophthora species has doubled, mainly affecting species delineation and natural groupings. This study aims to revisit the existing enigmatic clade system of Phytophthora and understand its phylogeny. Sequences of ex-type species of Phytophthora and its related genera in the crown Peronosporomycota were obtained in various databases. The data sequences were subjected to phylogenetic analyses and compared to the existing 8 to 10-clade system of Phytophthora. Generated results presented a similar 10-clade system. Further, ancestral trait reconstruction and species delimitation of the group are discussed. The framework proposed in this research will provide an overview of the clade system and the status of some provisionally described species and groups.

RNA-Seq of Phenotypically Distinct Eimeria maxima Strains Reveals Coordinated and Contrasting Maturation and Shared Sporogonic Biomarkers with Eimeria acervulina.

Strains of Eimeria maxima, an enteric parasite of poultry, vary in virulence. Here, we performed microscopy and RNA sequencing on oocysts of strains APU-1 (which exhibits more virulence) and APU-2. Although each underwent parallel development, APU-1 initially approached maturation more slowly. Each strain sporulated by hour 36; their gene expression diverged somewhat thereafter. Candidate biomarkers of viability included 58 genes contributing at least 1000 Transcripts Per Million throughout sporulation, such as cation-transporting ATPases and zinc finger domain-containing proteins. Many genes resemble constitutively expressed genes also important to Eimeria acervulina. Throughout sporulation, the expression of only a few genes differed between strains; these included cyclophilin A, EF-1α, and surface antigens (SAGs). Mature and immature oocysts uniquely differentially express certain genes, such as an X-Pro dipeptidyl-peptidase domain-containing protein in immature oocysts and a profilin in mature oocysts. The immature oocysts of each strain expressed more phosphoserine aminotransferase and the mature oocysts expressed more SAGs and microneme proteins. These data illuminate processes influencing sporulation in Eimeria and related genera, such as Cyclospora, and identify biological processes which may differentiate them. Drivers of development and senescence may provide tools to assess the viability of oocysts, which would greatly benefit the poultry industry and food safety applications.

The chemical composition of the aerial parts’ essential oil of Cynoglossum clandestinum Desf. growing in Sicily, Italy

Cynoglossum L. is a taxonomically difficult genus belonging to the Boraginaceae family, distributed in Asia, Europe, mainly in Turkey, and in the Mediterranean region. Plants of this genus are used against various diseases in the ethnomedicine of several countries. In the present study, the chemical composition of the essential oil was obtained from the hydrodistillation of aerial parts of the Sicilian accession of Cynoglossum clandestinum Desf. was analysed by GC and GC-MS. The main constituents of the essential oil were aldehydes and ketones (69.9%) with nonanal (18.9%), 4-sec-butoxy-2-butanone (18.1%), and 3-methyl-butanal (13.1%) as main metabolites. No one paper has been previously published on the essential oil of this species, and there is a lack of studies also in the near related genera. The aim of this work is in fact, to study a species that has never been investigated, and through this, try to help place it within the Boraginaceae family.

Predicting PC‐SAFT parameters based on COSMO‐RS

AbstractTo predict the size (m, σ) and energy (ε) parameters of the perturbed‐chain statistical associating fluid theory (PC‐SAFT) based on the conductor‐like screening model for realistic solvents (COSMO‐RS), in this work, the PC‐SAFT model parameters of 304 substances were reviewed and summarized, their COSMO‐RS results linked to the size and energy were predicted, and the relationships between the PC‐SAFT parameters and COSMO‐RS results were obtained in 3 cases (Case 1: relationships based on n‐alkanes, Case 2: category‐specific relationships, Case 3: generic relationships for 138 substances). Case 2 (including Case 1) shows the lowest average absolute relative deviations (AARDs) of 7.63% (m), 3.05% (σ), and 9.05% (ε), while Case 3 provides the prediction capacity with AARDs of 10.00% (m), 4.05% (σ), and 13.21% (ε), which is better than those developed by others. Finally, the new PC‐SAFT parameters were used to predict the densities and vapor pressures of 8 representative substances and compared with the results using the original PC‐SAFT parameters, showing that the parameters in Case 3 can be used to reproduce densities and the parameters in Case 2 (including Case 1) can be used to reproduce both densities and vapor pressures.

Phylogeny and taxonomic review of Oreocomopsis with description of a new genus Oreocomoides (Apioideae, Apiaceae)

A revision of the genus Oreocomopsis was carried out based on the study of morphological, anatomical and molecular phylogenetic data based on ITS nrDNA sequences, of which the scope and composition were specified. The identity of O. xizangensis with the previously described O. dochenensis is shown; on the contrary, O. aromatica is singled out as an independent taxon. Ostericum scaberulum var. longiinvolucellatum is included in the genus Oreocomopsis as an independent species. Taxonomic features of the genus and differences from related genera are analysed. The species Oreocomopsis stelliphora has been assigned to the new genus Oreocomoides. The new genus Oreocomoides markedly differs from Oreocomopsis in many morphological characters, such as heterophyllous leaf blades: bipinnate in lower part and narrow-linear pinnate in upper part; bracts polymorphic, linear or pinnate with linear lobules; calyx teeth developed; petals with oval plate, at base with well-developed claw; pedicels rounded; mericarps ribs similar, narrowly-winged, slightly widened at the base.