The cornea is the transparent tissue situated at the surface of the eye, with crucial protective and light refraction properties. Limbal epithelial stem cells (LESC), residing in the limbus in the peripheral cornea, play a crucial role in sustaining corneal clarity by continuously renewing the corneal epithelium. Due to this regenerative capacity, LESC loss or malfunction result in limbal stem cell deficiency (LSCD) and subsequent corneal opacity. Therefore, elucidating LESC development and lineage determination is paramount for the advancement and refinement of LESC‐based therapies.In this project, we have differentiated induced pluripotent stem cells (iPSC) into LESC using established in‐house protocols spanning a 25‐day period. Subsequently, we conducted single‐cell Assay for Transposase‐Accessible Chromatin with high‐throughput sequencing (scATACseq) at three distinct stages of differentiation (days 0, 11, and 25) to examine chromatin accessibility changes throughout the process. These findings were integrated with previously conducted single‐cell RNA sequencing (scRNAseq) on cells at equivalent differentiation stages. Analysis revealed six distinct cell populations based on overall chromatin accessibility profiles, aligning with the major cell clusters identified in scRNA‐seq data. We are currently conducting gene regulatory network analysis using both scATACseq and scRNAseq data to pinpoint the critical transcription factors driving LESC fate and comprehend the mechanisms underlying cellular heterogeneity during differentiation.This research aims to unveil novel epigenetic mechanisms and crucial factors potentially implicated in the dynamic process of LESC lineage determination, potentially benefiting the generation of LESC populations suitable for transplantation as well as providing novel insights for LSCD treatment options.
Read full abstract