Previous research has shown that misconceptions impair not only learners’ text comprehension and knowledge transfer but also the accuracy with which they predict their comprehension and transfer. In the present experiment with N = 92 university students, we investigated to what extent reading a refutation text or completing a think sheet compared with a control condition counteracts these adverse effects of misconceptions. The results revealed that both reading a refutation text and completing a think sheet supported learners with misconceptions in acquiring and accurately predicting their comprehension. Completing a think sheet additionally supported the learners in transferring their newly acquired knowledge, even though they were underconfident in their ability to do so. Moreover, learners who completed a think sheet were generally more accurate in discriminating between correctly and incorrectly answered test questions. Finally, delayed testing showed that the learning effects were quite stable, independent of the instructional method. This study reinforces the effectiveness of refutation texts and think sheets and provides important practical implications and avenues for future research.