Abstract Background Upadacitinib (UPA), a selective JAK1 inhibitor, has shown efficacy in moderate-to-severe Crohn’s disease (CD), even in patients refractory to advanced therapies. This study aimed to evaluate the effectiveness, safety, and durability of UPA in refractory CD in real-world settings, with a focus on early objective assessment using biological markers and intestinal ultrasound (IUS). Methods A retrospective analysis was conducted on 41 CD patients (61% male, median age 40 years [SD: 33–53], mean disease duration 11 years [SD: 6–17]). Disease characteristics and prior treatments, including anti-TNF (100%), ustekinumab (70.7%), vedolizumab (19.5%), and risankizumab (9.8%), were recorded. Clinical (Harvey-Bradshaw Index [HBI]), biological (C-reactive protein [CRP], fecal calprotectin [FCP]), and IUS parameters (wall thickness, affected segment length, Limberg score) were assessed at 1, 2, 3, 6, and 12 months. Median follow-up was 8.2 months (SD: 4.8–12.3). Treatment patterns included standard induction (46.3%), extended induction (29.3%), and sustained high-dose (24.4%). Results Clinical response (≥2-point HBI reduction) was significant from week 4 and sustained throughout follow-up. Baseline CRP was 0.60 mg/dL (SD: 0.28–1.30), decreasing to 0.30 (SD: 0.05–0.80) at 1 month, 0.14 (SD: 0.04–0.64) at 3 months, and 0.10 (SD: 0.04–0.42) at 12 months, showing a non-significant downward trend. FCP dropped from 860 µg/g (SD: 270–1700) to 506 (SD: 186–2343) at 1 month, 260 (SD: 121–1200) at 3 months, and 205 (SD: 120–382) at 12 months, with a similar non-significant trend. Of 31 patients with baseline IUS, 55.6% showed radiological improvement in at least two IUS parameters at 12 months, though not statistically significant. Nine patients (22%) discontinued UPA due to adverse events (7.3%) or lack of response (17%). Non-severe adverse effects were reported in 53.7%, predominantly dermatological, without requiring dose adjustments or discontinuation. No severe infections, thromboembolic events, or cardiovascular complications were observed. Conclusion UPA demonstrated rapid, effective, and safe treatment for refractory CD in clinical practice. Trends toward early clinical, biological, and sonographic improvements were observed, highlighting its potential in real-world management of refractory CD.
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