Reef Formation Research Articles

Climatic effect from oyster reef restoration in Spartina alterniflora invaded intertidal mudflat: From the perspective of CH4 and N2O production

Spartina alterniflora is a dominant invasive species along the coast of China. A surprising phenomenon that the oyster reef formation is substituting the S. alterniflora invasion, was recently observed in the west coast of Bohai Bay, North China. As the intertidal mudflat ecosystem is critical for coastal blue carbon, this paper aims to evaluate the climatic effect of the alternation from the perspective of potential CH4 and N2O production. The sediment geochemical properties and potential CH4 and N2O productions were therefore measured in sediments dominated by Spartina alterniflora (SA), oyster reef (OR), mixture of S. alterniflora and oyster reef (SA-OR) and bare mudflat (BM) at an intertidal mudflat. Meanwhile, sediment microbial community structure and function genes were also determined utilizing metagenome high-throughput sequencing technology. Our results indicated that the formation of oyster reef in S. alterniflora invaded intertidal mudflat might slightly reduce the sediment potential CH4 production and enhance the sediment potential N2O production. The oyster reef formation could alter the community composition of methanogens and the abundance of functional genes in methanogenesis, and transform the main pathway from methylotrophic to hydrogenotrophic methanogenesis in surface sediments. Metagenome sequencing revealed that the oyster reef formation may promote nitrification, inhibit dissimilatory nitrate reduction (DNRA) and nitrate assimilation functions, and reduce the abundance of nosZ genes. Mantel analysis showed that pH, soluble salt and dissolved carbon (DC) were the most important factors influencing the composition of microbial community. In general, our results imply that the growth of oyster reef in the S. alterniflora invaded area has opposing effects from the prospective of the potential CH4 and N2O production.

Structure of reef-building corals in tidal pools of a Marine Protected Area on the coastal zone of Royal Charlotte Bank, Eastern Brazil

ABSTRACT Brazilian coral reefs are the largest and richest reefs in the Southwestern Atlantic Ocean. Despite their historical and tourist importance, coral reefs on the east coast of Brazil remained unknown until recently. This study evaluated the structure of the reef-building coral community in three tidal pools along a gradient of anthropogenic disturbance. The pool known as Dolphin Pool is the warmest and has a high abundance of stony coral Siderastrea spp. One endemic species is on the national list of threatened species. Despite the high frequency of water temperatures above the alert threshold for mass bleaching events, the tidal pools have high densities of adults and recruits of reef-building corals. The results highlight the importance of reef formations on the coastal zone of the Royal Charlotte Bank, given the uniqueness of this area, and reinforce the need for further research and adoption of adaptive conservation approaches.

Multi-proxy assessment of coral reef formation and biotic-abiotic diversity in an urban coastal reef ecosystem in northeastern Brazil

Coral reefs are habitats with high animal and mineral diversity and are subject to both climate change and anthropogenic impacts. This article presents novel and relevant data on the Seixas coral reef environment's geological, sedimentological, mineralogical, and biotic aspects in Paraíba State, northeastern Brazil. The aim of this study is to evaluate the processes of reef formation and the diversity of coral reef species in urban coastal environments in northeastern Brazil using a multi-proxy approach. Materials and methods employed to analyze the formation and diversity of biotic and abiotic species include (a) bathymetric survey, (b) collection of sedimentological, mineralogical, and granulometric data, (c) geological and stratigraphic determination, and (d) identification of biotic and abiotic species. Mineralogical slide results reveal that the Seixas Reef is a recent biogenic coral-algal carbonate formation associated with coastline evolution, high coastal sedimentation, and changes that occurred alongside sea-level rise (Holocene-Quaternary period). The diversity results indicate that benthic organism settlement occurred on a consolidated arenite base, with the fauna undergoing continuous succession processes. It can be concluded that this coral reef is highly vulnerable due to the material of its formation and comprises subsectors with high diversity (fore reef) and others with low diversity (reef top), which are affected by both anthropogenic and natural factors. Studies of this nature can contribute to understanding the evolution of coastal reefs, as their proximity to the continent makes them more vulnerable, and they experience direct physical impacts from fishing and tourist activities.

Climate change, site formation, and indigenous use of coastlines in Barbuda

This article explores the landscape dynamics at the island of Barbuda in the context of changing climate to understand (1) the environmental setting of indigenous settlements; (2) the impacts of current coastal processes; and (3) the potential threats moving forward toward increasing pressure of climate change. Focusing on the site of Seaview, on the east coast of Barbuda, we use geoarchaeological methods to reconstruct the ancient geomorphological setting, investigate changes post-abandonment, and identify the hazards faced under future sea-level projections. Our study shows that (1) sea level stabilization after the Mid-Holocene allowed the formation of coral reefs, seagrass beds and other benthic ecosystems that allowed for biogenic sediment accumulation and growth of sand dune retention ridges. (2) These environmental characteristics, including rich marine food sources, supported the establishment and flourishing of Seaview starting ca. 160 BC. (3) Occupation ended at some point between AD960 and 1000. This change coincided with a period of increased storminess, higher SSTs, and possible coral reef mortality that affected both food availability and sediment supply. (4) Lack of sediments triggered progressive sand dune erosion that continues today and has left the sand dune ridge past the tipping point of erosion. (5) Looking into a future of rapidly changing climate, sea level rise poses a severe and devastating threat to the land- and seascapes of Barbuda. With the lowland coastal plain at or only slightly above current sea level, a rate of SLR comparable to Mid-Holocene rates, and rapid loss of sand dune ridges and coral reefs as natural barriers, it is just a matter of time before the lowlands become transformed beyond recognition. The results of this analysis can be used to improve long-term management of the heritage resources of Barbudans and shed light on parallel challenges experienced on other tropical coastal locations.

Analysis of The Conditions of Acropora Transplant Corals in "Liang" Bunaken National Park, North Sulawesi Province

Coral transplantation is the grafting or cutting of live corals to be transplanted elsewhere or where the corals have been damaged, aiming for restoration or the formation of natural coral reefs. Coral transplantation plays a role in accelerating the regeneration of coral reefs that have been damaged and can also be used to build new coral reef areas that previously did not exist. Meanwhile, the objectives of the research are: To describe the initial conditions, artificial coral transplantation in Liang, at the Bunaken National Park location; Analyzing the number of transplanted corals that survived for 3 years; Analyzing the condition of transplanted corals by measuring the length and number of coral branches that survived for 3 years. The results obtained for coral transplantation carried out in "Liang" Bunaken National Park, from 84 transplanted in 7 Modules, 76 coral fragments survived, and only 8 coral fragments died, with a 90% survival percentage. The average value of the increase in height of transplanted coral fragments was 10 cm, and the number of branches that increased in each coral fragment was an average of 11 branches in each surviving coral fragment. This means that from 2018 to 2021, the increase in height and number of branches is around 3 cm per year.

Checklist, diversity descriptors and selected descriptions of a highly diverse intertidal sponge (Porifera) assemblage at Costa do Descobrimento (Bahia, Brazil).

Costa do Descobrimento is located in southern Bahia, Brazil, and only 22 species of sponges (Porifera) were known from the area until now, despite its important reef formations. In the present study, we report a checklist of the sponges of Costa do Descobrimento and their distribution in the studied reefs, with several species illustrated in life. We also describe nine new sponge records for this region, some of which are new records for Brazil, or new records of species previously only poorly known. We present alpha and beta diversity indices and compare the sponge assemblage of the sampled locations. Four reefs were considered: two fringing reefs (Arraial D'Ajuda-AA and Coroa Vermelha / Mutá-CVM) and two offshore Municipal Marine Park "Parque Municipal Marinho- (P.M.M. Coroa Alta-CA and P.M.M. Recife de Fora-RF). A total of 229 specimens were collected (224 Demospongiae, 2 Homoscleromorpha and 3 Calcarea). These were classified in 101 morphotypes. Studied materials included representatives of 15 orders, 34 families and 48 genera. The richest orders are Haplosclerida (29 spp.), Poecilosclerida (15 spp.) and Tetractinellida (11 spp.). The richest families were Chalinidae (24 spp.), Clionaidae (7 spp.) and Mycalidae and Suberitidae (6 spp. each). The richest genus is, by far, Haliclona (20 spp.). Only 13 species were shared among all four reefs surveyed, namely Amphimedon viridis, Cinachyrella alloclada, C. apion, Cladocroce caelum, Cliona varians, Dysidea robusta, Mycale (Naviculina) diversisigmata, Niphates erecta, Spirastrella hartmani, Tedania (Tedania) ignis, Terpios fugax, Tethya bitylastra and T. maza. The reefs with the highest richness were CA and CVM, and the lowest richness was observed in RF. The most similar reefs in terms of species composition were CA and CVM, while AA and RF were more dissimilar to the previous reefs, but also from each other. While the difference among CA, CVM and AA was mainly explained by species turnover, RF differed from the previous based on its lower richness (nestedness component). Even though CA and CVM were the richest reefs, AA presented the highest number of exclusive species, highlighting the uniqueness of this reef, and urging the inclusion of local beachrock fringing reefs in a more holistic conservation strategy at Costa do Descobrimento.

Preliminary observations on the coral reef communities in Angria Bank, an isolated carbonate bank in the Northern Indian Ocean

Submerged carbonate banks are of significant geological and biological importance and relatively little is known about the biodiversity of these deeper and less accessible habitats. This study provides pilot information on the biodiversity and spatial distribution of the coral reef communities in Angria Bank, a submerged carbonate platform along the central west coast of India. An exploratory survey was carried out in January 2014 to document the habitat characteristics and biodiversity of different reef communities across a gradient from the western to the eastern edge of the Angria Bank. The western zone of the bank comprises rocky and coralline substrates in contrast to the eastern zone which is sandy with calcareous deposits. The overall biodiversity includes 16 genera of corals from 10 families and 82 species of reef fish from 26 families, comparatively lower than the other major reef formations in the Indian Ocean. The study sites between the depths of 25–29 m along the eastern edge of the bank host abundant and diverse coral communities. The macroalgae was equally abundant in three of the five dive sites along the east zone reflecting the homogeneous distribution of reef communities in the Angria bank. Other invertebrates including members of the phylum Porifera, Mollusca, Annelida, Arthropoda, Echinodermata, and Cnidaria account for 28 species. Angria Bank signifies a biodiversity hotspot and these remote habitats hold the potential to serve as a refugium for the shallow reef communities for a range of environmental disturbances. Further research to understand the effect of climate-associated stress on the reef communities of Angria bank is vital to evolve a conservation strategy to sustain the biodiversity and resilience of these communities.

Reef growth and carbonate sedimentation at the southernmost Pacific reefs

Lord Howe Island and Balls Pyramid are located at the latitudinal limit of coral reef formation in the Tasman Sea, with the fringing reef on the western margin of Lord Howe Island considered to be the southernmost coral reef in the Pacific. An extensive submerged fossil reef occurs on the shelf around Lord Howe Island. Mapping of the shelf surrounding Balls Pyramid, 24 km south of Lord Howe Island, has revealed a comparable submerged mesophotic reef system in 30–50 m water depth supporting scattered live coral colonies. Radiocarbon dating of coral extracted from limestone cores on the fossil reef reveals that accretion occurred during the early Holocene (10,100–8800 cal. Years BP), concurrent with the first phase of Holocene accretion around Lord Howe Island. The timing of fossil coral growth on the shelves of the two islands indicates that the reefs have been drowned by rising sea level. The fossil reef around Balls Pyramid is a give-up reef that was unable to keep pace with sea level. After its demise, carbonate sediment production continued across the shelf with sands and gravels that have accumulated in basins and channels, between the submerged fossil reef structures. Vibrocores record a fining upward sequence of sands overlying rhodoliths and angular carbonate gravels. The coral reef around Lord Howe Island persisted a little longer (∼7000 cal. Years BP) and has accreted into shallower water (∼25 m). The reef here was able to backstep to form the modern fringing reef. Although similar benthic habitats characterise both shelves, availability of suitable accommodation space on Lord Howe Island enabled deposition of sequences of eolianite during successive Late Quaternary highstands, and the development of a modern fringing reef and lagoon over eroded basalt, and late Pleistocene reef and eolianite. Antecedent topography has provided a first-order control on establishment and persistence of reef habitats during post-glacial sea-level rise, and the relative extent of past reef structures and eroded bedrock outcrops has constrained coral reef accretion at this latitudinal limit.

Middle Devonian (Givetian) coral-stromatoporoid patch reefs from the Lazhuglung Formation, Xizang (Tibet) and their palaeoecological and palaeogeographical implications

We carried out, for the first time, detailed studies on the coral-stromatoporoid patch reefs from the Lazhuglung Formation near Shouxinghu in the Lazhuglung-Badangco area, Ngari Prefecture of Xizang (Tibet) Autonomous Region, China. On the basis of 1085 thin sections prepared from three patch reefs, the fossil components and reef structures are depicted. The patch reefs are found to encompass diverse fossil organisms, including tabulate and rugose corals, stromatoporoids, brachiopods, gastropods, ostracods, nautiloids, calcified cyanobacteria, and tubeworms. Tabulate corals and stromatoporoids are the predominant reef-builder, particularly Alveolites obtortus and Gerronostromaria gromotuchense. The patch reefs are Middle Devonian Givetian in age based on the tabulate coral and stromatoporoid assemblage. Extensive biotic interactions between the reef organisms are found in all three patch reefs, which are beneficial for the reef formation and development. The ecological features of the corals and stromatoporoids indicate a mesophotic ecosystem that is widespread in the Givetian. In addition, the common species and similar characteristics between the faunas in the Lazhuglung Formation, North Qiangtang Block and those in South China suggest a close palaeobiogeographic relationship. This study enhances our understanding on fossil components, reef structure and tectonic affiliation of the Palaeozoic strata in the Lazhuglung-Badangcuo area.

Палеоэкологическая и фациальная характеристика органогенной постройки горы Сестра в Южном Приморье

A lithological-paleoecological description of the organogenic structure of Mountain Sestra is given. A macro- and microscopic study of the fauna composing the structure was carried out, its percentage content in limestones and the role of each group of organisms in the reef formation process were determined. Based on the data obtained, six genetic types of limestones were identified: biohermic, biomorphic, detrital, biohemogenic, clastic and granular. Studies of the taxonomic composition and the structure of communities allowed us to identify three distinct stages in the development of organogenic structure corresponding to facies: 1) banks, 2) biostromes and 3) bioherms. A detailed description of each stage of development is given. Based on the description, assumptions are made about the initial stage of reef formation. The findings of some species of sphinctozoa new to this locality are reported: Colospongia globosa Belyaeva, 1991; Amblysiphonella regularis Zhang, 1983 and Discosiphonella squamilis Belyaeva, 1991.

Reefogenic Lower Permian megareservoirs in the south of the Khoreyver depression of the Timan-Pechora province in connection with the prospects for oil and gas potential

In the southern part of the Khoreyver depression, a structure of the first order, which is a fragment of the supra-order Pechora megasyneclise, ring and linearly elongated structures have been established - parts of the complex Assel-Sakmar reef system. In the Sandiveyskaya area, the reef formations of the Lower Permian are commercially oil and gas bearing. Several fields have been discovered here: Sandiveyskoye, Severo-Khayakhinskoye, Veyakshorskoye, Vostochno-Veyakskoye, Salyukinskoye and others, including those with high oil production rates. As a result of the analysis of 2D and 3D seismic data and a complex of drilling and well logging data, numerous reservoir zones with high porosity and permeability properties were identified and mapped in the upper parts of reef structures, which are highly promising objects for the search for oil and gas deposits in the Lyzayuskoye, South Sandivey and East Bagan areas. Keywords: reef systems; oil and gas reservoirs; filtration-capacitive properties.

Reef Complexes of the Late Ordovician–Early Silurian Altai Basin: Classification, Structure, Paleobiota, and Paleogeography

Abstract —The paper presents data on the classification, structure, and biota of reef complexes from the Late Ordovician–early Silurian Altai Basin. The early Paleozoic history of the Altai Basin included the early–middle Katian, late Katian, early Hirnantian, late Telychian, and middle–late Sheinwoodian events of large-scale reef formation which produced framework reefs, mud mounds, and coral meadows. The early Paleozoic reefs of the area formed at rates of 40 to ~12 cm per thousand years. The late Telychian reef system, which formed in 0.51–1.0 Myr, occupied the largest area of the basin. The lateral extent of reef systems in the Late Ordovician–early Silurian basin of Altai depended more on the rates of vertical and lateral growth, as well as on the previous sea bottom topography and clastic inputs, than on the duration of reef formation. Carbonate deposition in the Altai basins of that time can be simulated with a general model implying formation of distal barrier reefs.

Seismic imaging of the gold deposit and geological structures through reprocessing of legacy seismic profiles near Kloof–Driefontein Complex East Mine, South Africa

AbstractTwo legacy reflection seismic profiles were acquired in 1988, north of the Kloof–Driefontein Complex East Mine in the West Rand goldfield (South Africa), for the purpose of gold exploration and mine planning. These legacy 2D seismic data have been reprocessed using the latest processing tools to improve imaging. Special interest is given to the Black Reef Formation, which hosts a known gold orebody. The original legacy data are of poor quality, especially in areas that are dominated by dolomitic outcrops. To improve the quality of the data, special attention was given to the refraction static correction to enhance the continuity of the reflections below dolomitic rocks. Refraction seismic tomograms from both profiles exhibit three‐layer P‐wave velocity models: (1) topsoil (1000–2000 m/s), (2) a weathered layer ranging from ca. 100 to 300 m in thickness (2000–5000 m/s) and (3) bedrock (> 5000 m/s). Seismic profile OK‐212 shows poor imaging of the Black Reef Formation because of the scattering of seismic energy in the near‐surface due to dolomites from the Transvaal Supergroup, while seismic profile OK‐213 exhibits south‐dipping reflections that are associated with the Black Reef Formation. To improve the structural imaging resolution, we tried pre‐stack time migration, pre‐stack depth migration and post‐stack time migration using the Kirchhoff algorithm. PreSDM most improved the imaging of deeper reflections due to its ability to honour complex lateral variations in the velocity field. Both pre‐stack time migration and post‐stack time migration enhanced the continuity of the near‐surface reflections below the dolomitic rocks.

Microscale evolution of reefal microbialites

Reefal microbialites are crusts and infills of microbialites developed within primary cavities of late Quaternary coralgal reef frameworks. In spite of many previous studies, factors controlling mesofabric transitions, particularly from laminated to digitate microbialites but as well as the microscale formation process in relation to microbial communities, have not yet been fully understood. Furthermore, there are still controversies regarding age differences between reef framework growth and microbialite formation. The authors have discussed the macroscale evolution of primary cavities as well as the microscale evolution of reefal microbialites obtained in a middle Holocene reef core drilled off Okinawa Island, south-west Japan, based on petrographic observations using light and scanning electron microscopy with energy dispersive X-ray spectroscopy and radiocarbon (14C) ages of corals and reefal microbialites. The authors’ petrographic observations show that coralgal reef framework growth was followed by encrusting foraminifers and metazoans, coevally with macro-bioerosion and microbioerosion of coralgal frameworks, then finally infilled with an intraskeletal and boring-filling microbialite (IBFM) and encrusted by reefal microbial crusts (RMCs), including structureless and digitate microbialites. The observed macroscale evolution was probably driven in response to progressive changes to reduced light and water circulation in the primary cavities associated with middle Holocene transgression and reef formation. The microfabric of reefal microbialites consists of primary in situ precipitated peloids (spherical micritic clots), voids (primary pores) and allochthonous detrital grains (bioclastic and siliciclastic) fallen from upper reef surfaces. IBFM geopetally infilled inside bioeroded cavities soon after the bioerosion of coralgal frameworks. RMCs have a two-layered microfabric succession, which is composed of the alternation of dense peloidal aggregates and laterally aligned voids in the lower part and the mixing of peloidal aggregates and irregularly and vertically developed voids in the upper part. The authors speculate that the repeated occurrences of laterally aligned voids in the lower part may imply the intermittent pauses of peloidal formation, while peloids accumulated on the irregular outer surfaces may result in the formation of vertically developed voids and digitate surfaces in the upper part. These peloids are probably formed by coccoid sulfate-reducing bacteria in anoxic environments developed by the degradation of bacterial biofilms and organic matters, allowing sulfate reduction and increasing alkalinity, therefore carbonate precipitation. The two-layered microfabric succession generally observed in RMCs may reflect spatial-temporal oxic/anoxic variations in interstitial water and the degree of sulfate ion supply by the gradual closing of primary cavities.

Local-scale feedbacks influencing cold-water coral growth and subsequent reef formation

Despite cold-water coral (CWC) reefs being considered biodiversity hotspots, very little is known about the main processes driving their morphological development. Indeed, there is a considerable knowledge gap in quantitative experimental studies that help understand the interaction between reef morphology, near-bed hydrodynamics, coral growth, and (food) particle transport processes. In the present study, we performed a 2-month long flume experiment in which living coral nubbins were placed on a reef patch to determine the effect of a unidirectional flow on the growth and physiological condition of Lophelia pertusa. Measurements revealed how the presence of coral framework increased current speed and turbulence above the frontal part of the reef patch, while conditions immediately behind it were characterised by an almost stagnant flow and reduced turbulence. Owing to the higher current speeds that likely promoted a higher food encounter rate and intake of ions involved in the calcification process, the coral nubbins located on the upstream part of the reef presented a significantly enhanced average growth and a lower expression of stress-related enzymes than the downstream ones. Yet, further experiments would be needed to fully quantify how the variations in water hydrodynamics modify particle encounter and ion intake rates by coral nubbins located in different parts of a reef, and how such discrepancies may ultimately affect coral growth. Nonetheless, the results acquired here denote that a reef influenced by a unidirectional water flow would grow into the current: a pattern of reef development that coincides with that of actual coral reefs located in similar water flow settings. Ultimately, the results of this study suggest that at the local scale coral reef morphology has a direct effect on coral growth thus, indicating that the spatial patterns of living CWC colonies in reef patches are the result of spatial self-organisation.

Fraser Island (K'gari) and initiation of the Great Barrier Reef linked by Middle Pleistocene sea-level change

The eastern Australia coastline is characterized by impressive coastal landforms and an extensive northward-moving longshore drift system that have been influenced by a stable, long-term tectonic history over the Quaternary period. However, the timing and drivers of the formation of two conspicuous landscape features—Fraser Island (K’gari) and the Great Barrier Reef—remain poorly understood. Here we use optically stimulated luminescence and palaeomagnetic dating to constrain the formation of the extensive dunes that make up Fraser Island, the world’s largest sand island, and adjacent Cooloola Sand Mass in southeastern Queensland. We find that both formed between 1.2 Ma and 0.7 Ma, during a global climate reconfiguration across the Middle Pleistocene transition. They formed as a direct result of increased amplitude of sea-level fluctuations associated with increasing global ice volume that redistributed previously stored sediment across the continental shelf. The development of Fraser Island dramatically reduced sediment supply to the continental shelf north of the island. This facilitated widespread coral reef formation in the southern and central Great Barrier Reef and was a necessary precondition for its development. This major reorganization of the coastal sedimentary system is probably not unique to eastern Australia and should be investigated in other passive-margin coastlines.

Patch reefs as sources of long and continuous skeletal records of horizontal reef expansion in Dongsha Atoll, South China Sea

Atolls are annular midocean reefs with various topographical features. The reef rim of an atoll encloses a central lagoon and lagoonal patch reefs therein. Two hypotheses explaining the origins of patch reefs in atoll lagoons have been developed: the karst hypothesis and the growth hypothesis, which emphasize the role of uneven erosion and uneven timing of reef accretion (especially horizontal expansion), respectively, in the formation and growth of patch reefs. In this study, we investigated trends in the locations, depths, ages, sizes, and other features of flat-top and pinnacle-top reefs in the Dongsha Atoll in the South China Sea by analyzing bathymetric LiDAR images and performing U-Th dating on samples we collected from various reefs in the atoll. Three of our main findings were consistent with the growth hypothesis: (1) the differences in ages of the centers of different flat-top patch reefs reflected the different times at which each patch reef reached the surface and started to expand horizontally; (2) the top surfaces of individual flat-top patch reefs had old centers and young peripheries, reflecting horizontal growth; and (3) all the pinnacle-top reefs we examined had more live corals on their tips than on the surrounding bases. We observed no positive correlation between the ages of the centers and the diameters of flat-top patch reefs; that is, larger reefs did not necessarily have older centers, indicating that various complex factors affect the expansion and age patterns of patch reefs. Overall, the findings of this study provide support for the growth hypothesis and for the use of flat-top patch reefs as sources of easily accessible long-term coral skeletal records. They may therefore serve as a reference for future studies on asymmetric reef expansion and other relevant topics.

Early biomineralization and exceptional preservation of the first thrombolite reefs with archaeocyaths in the lower Cambrian of the western Anti-Atlas, Morocco

AbstractThrombolite reefs with archaeocyaths are common in the subtidal limestones of the lower Cambrian in the western Anti-Atlas of Morocco. The Igoudine Formation of the Tata Group recorded the first replacement of the microbial consortium (stromatolite-dominated) by thrombolite reefs with archaeocyaths and shelly metazoans. In order to better understand the role of the microbial community in the formation of thrombolite reefs with archaeocyaths across this critical transition, the macro-, micro- and ultra-fabric of thrombolites have been studied in detail. Three major components are identified within the first thrombolytic reef: archaeocyaths, calcimicrobes and micritic matrix. The studied thrombolites are typically dominated by the calcimicrobe Renalcis with subordinate Epiphyton and Girvanella. Scanning electron microscopy of the dark micrite of the Renalcis chambers showed amorphous translucent sheet-like structures interpreted as extracellular polymeric substances, closely associated with organominerals including nanoglobules and polyhedrons. Exceptionally well-preserved Renalcis chambers contain bacterial fossils similar to those described in modern microbialites, including microspherical coccoid fossils and filamentous bacteria that are either spaced or in close associations forming colonies. These organomineralization-related features suggest a bacterial origin for the Renalcis calcimicrobe. The matrices between the Renalcis chambers consist predominantly of clotted peloidal micrite. Mineralization of Renalcis microframes may involve two major biomineralization processes: (1) replacement of organic matter by organominerals resulting from anaerobic degradation of extracellular polymeric substances and bacterial sheaths and (2) encrustation of bacterial sheaths and extracellular polymeric substances due to increasing alkalinity of the microenvironment. These mechanisms played a crucial role in the early diagenetic cementation and preservation of the studied reefs.

Climate drives coupled regime shifts across subtropical estuarine ecosystems

Ecological regime shifts are expected to increase this century as climate change propagates cascading effects across ecosystems with coupled elements. Here, we demonstrate that the climate-driven salt marsh-to-mangrove transition does not occur in isolation but is linked to lesser-known oyster reef-to-mangrove regime shifts through the provision of mangrove propagules. Using aerial imagery spanning 82 y, we found that 83% of oyster reefs without any initial mangrove cover fully converted to mangrove islands and that mean (± SD) time to conversion was 29.1 ± 9.6 y. In situ assessments of mangrove islands suggest substantial changes in ecosystem structure during conversion, while radiocarbon dates of underlying reef formation indicate that such transitions are abrupt relative to centuries-old reefs. Rapid transition occurred following release from freezes below the red mangrove (Rhizophora mangle) physiological tolerance limit (-7.3 °C) and after adjacent marsh-to-mangrove conversion. Additional nonclimate-mediated drivers of ecosystem change were also identified, including oyster reef exposure to wind-driven waves. Coupling of regime shifts arises from the growing supply of mangrove propagules from preceding and adjacent marsh-to-mangrove conversion. Climate projections near the mangrove range limit on the Gulf coast of Florida suggest that regime shifts will begin to transform subtropical estuaries by 2070 if propagule supply keeps pace with predicted warming. Although it will become increasingly difficult to maintain extant oyster habitat with tropicalization, restoring oyster reefs in high-exposure settings or active removal of mangrove seedlings could slow the coupled impacts of climate change shown here.

The Formation of Atolls: New Insights From Numerical Simulations

AbstractSeveral theories have been proposed to explain atoll formation. While karst dissolution during glacial periods and preferential coral reef accretion along raised bank margins during deglaciations and interglacials have been invoked to explain atoll formation, the respective roles of karst dissolution and reef margin construction in atoll formation have not been adequately evaluated by simulations. In this study, we conducted three‐dimensional numerical simulations of the Quaternary development of Meiji Atoll in the southern South China Sea based on interpreted data from a 2020‐m‐deep borehole drilled on its northeast rim in 2018. Our results suggest that the origin of atolls is more likely due to spatially differential dissolution across margin and interior areas (i.e., minimal along margins and maximal in bank centers) rather than preferential reef accretion along margins of flat‐topped banks. Preferential reef accretion along margins of flat‐topped banks that can result in central lagoons and atoll morphology can hardly result in the formation of lagoonal patch reefs that reach mean sea level. Preferential reef accretion along margins is mainly predicated on the karst‐induced morphology that has a central depression surrounded by raised rims, that is, using antecedent karst morphologies. If topographic highs in the lagoon are similar in elevation to the margins, reef accretion on these topographic highs can be similar to that observed on the margins, resulting in lagoonal patch reefs that reach mean sea level. Our simulation shows that spatially differential dissolution across margin and interior areas is a critical driver of worldwide central lagoons and atoll formation.