This work reports an investigation of the physicochemical properties (density, viscosity, refractive index and thermal stability) of four binary mixtures having a common acetate ([OAc]¯), trifluoromethanesulfonate ([OTf]¯) or bis(trifluoromethylsulfonyl)imide ([NTf2]¯) anion with either cation-fluorinated and non-fluorinated methylimidazolium (MIm) or pyridinium (Py) cations respectively, at various temperatures. The mixing behaviour of the binary mixtures was analysed by 1H and 19F Nuclear magnetic resonance (NMR) spectrometry, and the excess properties of the mixtures were calculated from the physicochemical data. The binary mixtures of fluorinated ionic liquids (FILs) with their non-fluorinated or alkyl-substituted analogues (AILs) showed an increase in density and viscosity but a decrease in refractive index with an increase in mole fraction of the pure FILs. The thermal stability of the AILs was higher than the FILs, however, an increase in the mole fraction of the pure FILs in the binary mixtures made a negligible impact on the thermal stability of the binary mixtures. These binary mixtures were found to deviate from ideal behaviour for the different physicochemical properties tending to vary between the extremes of the pure components. The large differences in properties of FILs compared with their non-fluorinated analogues were shown to be associated with the size of the fluorine atoms in the fluoro-alkyl chain, the tendency of the fluoro-alkyl chain to form aggregates with fluorinated anions, and the hydrogen bond acceptor strength of the anions. The excess properties were fitted to the Redlich-Kister polynomial equation, and no significant deviation was obtained. This study shows that the physicochemical properties of the fluorinated ionic liquids can conveniently be adjusted for specific applications by simply varying the amount of the cation-fluorinated component in binary mixtures.