Red Oak Research Articles

Fungal Footprints: Soil Fungal Communities in Black Walnut and Red Oak Forests

Soil fungal communities are critical for forest ecosystem functions in the Central Hardwood Region (CHR) of the USA. This evaluation, which took place in 2022–2023, investigates the influence of Juglans nigra (BW, black walnut) and Quercus rubra (NRO, Northern red oak) on soil properties and fungal community structures across three CHR sites. The objectives of this study are to investigate how the fungal communities identified beneath J. nigra and Q. rubra serve to influence biodiversity and soil health within hardwood plantations. Soils from two locations in Indiana and one in Michigan were examined and assessed for variations in fungal composition and diversity. Soil fungal communities were characterized using Illumina high-throughput sequencing while multivariate analysis was applied to analyze patterns in these fungal communities. These data provided insights into how environment, location, and tree species affect fungal community structure. Results indicate that J. nigra soils exhibited higher carbon (0.36%, 1.02%, 0.72%), nitrogen (25%, 29%, 56%), and pH (0.46, 1.08, 1.54) levels than Q. rubra soils across all three sites and foster greater fungal diversity. Specifically, J. nigra was associated with increased Ascomycota diversity, whereas Q. rubra supported a higher prevalence of Basidiomycota. Basidiomycota were negatively correlated with carbon and pH, while Ascomycota showed positive correlations with these variables. These findings highlight how crucial it is to understand how different tree species influence fungal communities and, consequently, how they influence forest soil health. Our findings serve to improve forest management practices by emphasizing the importance of fungal communities in maintaining the function and resilience of an ecosystem. Our study underscores that grasping these specific interactions is essential for effective forest management, especially when considering how to use fungal communities to boost plant growth. This work focuses on hardwood plantations rather than either agricultural ecosystems, monocultures, or native forests, thus filling a gap in the current literature where many studies are limited to specific fungal groups such as mycorrhizae. In future research, it is important to examine a wider range of tree species. This will deepen our understanding of fungal community dynamics and their impact on maintaining healthy forest ecosystems. Our hardwood plantation focus also notes the potential for adaptive forest management as environmental conditions change.

Canker and dieback of Alnus rubra is caused by Lonsdalea quercina.

Understanding the ecology of pathogens is important for disease management. Recently a devastating canker disease was found on red alder (Alnus rubra) planted as landscape trees. Bacteria were isolated from two groups of symptomatic trees located approximately 1 kilometer apart and one strain from each group was used to complete Koch's postulates. Results showed that these bacteria can not only cause disease on red alder but also on two other alder species. Unexpectedly, analyses of genome sequences of bacterial strains identified them as Lonsdalea quercina, a pathogenic species previously known to cause dieback of oak species, but not alder. Additionally, a core genome phylogeny clustered bacterial strains isolated from red alder within a subclade of L. quercina strains isolated from symptomatic oak trees. Consistent with the close phylogenetic relationship, there was no obvious evidence for divergence in genome composition of strains isolated from red alder and oak. Altogether, findings indicate that L. quercina is a potential threat to Alnus species.

Effects of tree species identity on soil microbial communities in Juglans nigra and Quercus rubra plantations.

Understanding how different tree species affect soil microbial communities is crucial for sustainable forestry and ecosystem management practices. Despite Black walnut (Juglans nigra L.) forestry having a rich history, the overall comprehension of how this hardwood species influences soil remains incomplete. In earlier studies, we examined the effects of hardwood plantations on soil chemical properties and their interaction with microbial biomass, however, we highlight the importance of studying the soil microbial communities and their relationship with soil properties in greater depth. Building on this foundation, our research focused on evaluating microbiome compositions beneath J. nigra and another hardwood, Northern red oak (Quercus rubra L.) after a decade of establishment. We uncovered intriguing patterns within the soil bacterial/archaeal and fungal structures by conducting meticulous analyses utilizing amplicon sequencing alongside soil chemical properties. Our findings underscore that tree species play a pivotal role in shaping soil microbial structures, a role that surpasses even seasonal and depth influences. Most notably, J. nigra stands out for its ability to enhance microbial diversity, as evidenced by increased alpha-diversity indices compared to baseline values. Conversely, Q. rubra tends to decrease these indices. Significant disparities in microbial composition between the two tree species were evident, with J. nigra exhibiting enrichment in certain taxa such as Nitrospira, Geobacter, and Bacillus while Q. rubra showed enrichment in others like Acidobacteriota and ectomycorrhizal fungi. Furthermore, we also observed differences in co-occurrence networks by delving deeper into the interconnections within the soil microbiota. In both fungal and bacterial/archaeal communities, J. nigra and Q. rubra notably decreased the number of connections within their networks, while Q. rubra increased some, suggesting a more interconnected network. These differences were further highlighted by network metrics with Q. rubra displaying a higher mean degree and clustering coefficient. Additionally, our analysis revealed that tree species influence soil chemical properties, either directly or indirectly, thereby affecting soil bacterial and fungal communities. In conclusion, our study elucidates the intricate interplay between tree species and soil microbiota, emphasizing the need to consider these relationships in forestry and ecosystem management practices.

Seasonal activity and phoresy rates of Nitidulid beetles (Coleoptera: Nitidulidae) captured in stands with oak wilt infections in northern Michigan, USA.

Nitidulid beetles (Coleoptera: Nitidulidae), the overland vectors of the Bretziella fagacearum fungus that causes oak wilt, were monitored in infection centers in Quercus rubra stands in northern Michigan, USA using baited, wind-oriented traps for 2 years. First nitidulid captures, accounting for <1.5% of total annual captures, occurred in late April in both years (<50 cumulative degree days [DDs]; base 10°C). A total of 1,188 and 735 beetles representing 19 and 18 species were captured in 2018 (18 traps; 3 sites) and 2019 (16 traps; 4 sites), respectively. Ground traps (1.5 m high) captured more beetles and species than traps on canopy branches of red oaks. Most nitidulids (81-86%) were captured in May and June, but frequent precipitation and cool spring temperatures extended activity into early July in 2019. In 2018, 336 beetles representing 12 species were screened for B. fagacearum spores, but only 20 beetles from 4 species bore viable spores. Mycelial mats on red oaks killed were 4-fold more abundant in 2019 than in 2018. Of the 225 beetles screened in 2019, 56 beetles representing 6 species had viable spores. Nearly all (96%) spore-bearing beetles in both years were captured in late May or June. In bimonthly xylem samples collected from healthy trees, large earlywood vessels, presumably more vulnerable to infection than latewood, were present from May to June in 2018 and until early July in 2019. Results are consistent with mid-May to mid-July high-risk periods designated in current state and regional guidelines for oak wilt management.

The effects of environmental heterogeneity on the morphological similarity of toothed-leafed red oak species (Acutifoliae; &lt;i&gt;Quercus&lt;/i&gt;) in Mexico and Central America

Background: In plants, environmental gradients can promote similar morphophysiological traits in species that inhabit areas with similar climatic conditions. Here, to evaluate possible causes of morphological similarity, we analyzed leaf morphological and functional variation in toothed-leaf oaks and its relationships with environmental and geographic variables. Hypotheses: We expected that species with a greater degree of environmental overlap would exhibit similar leaf morphology, and those with a broader range of environmental tolerance would exhibit greater leaf morphological variation. Studied species: Acutifoliae group (Fagaceae, Quercus) Study sites and dates: Leaf samples were collected from adult trees distributed in diverse forest types between 495 and 2,566 meters above sea level (m asl) in Mexico and Guatemala. Methods: We compared patterns of leaf variation in a total of 2,934 leaves from 640 individuals corresponding to 68 populations of ten oak species using univariate and multivariate analyses. We also characterized the environmental conditions where each of the species occurred using the available geographical records and bioclimatic variables. Results: We found morphological overlap in leaf traits in oak species occurring in similar climatic environments. Additionally, oak species with a greater range of environmental distributions showed greater leaf shape morphological variation. Conclusions: The environment influenced the generation of similar leaf morphologies among oak species despite geographical distance and phylogenetic relationships.

Characterization of sugar maple and red oak bark: Efficient lignin extraction via the Organosolv and acidic dioxane process

The barks of two wood species, sugar maple (SM) and red oak (RO), were investigated to characterize their chemical composition and isolate the lignins they contain, representing relatively underexplored and underutilized polymers. Characterizing these two barks involved assessing extractive components, Klason and acid-soluble lignin, ash content, and sugars. It was observed that RO bark had a higher concentration of extractive substances and a lower Klason lignin content compared to SM bark. The Klason lignin content in the barks of the SM and RO bark was measured at 35.0% and 26.4%, respectively, higher than values reported for corresponding to wood of the same species, 21.8% and 22.2%, respectively, for RO and SM. Lignin isolation from bark was achieved by utilizing Organosolv catalytic and acid dioxane processes. Notably, the Organosolv process yielded lignins of considerably higher purity. The structural analysis of the bark lignins was peformed by combination of spectroscopic methods: FTIR,13P NMR, and solid-state NMR. Compared to dioxane lignins, a higher concentration of OH bound to syringyl and guayacyl units were found in Organosolv lignins. In contrast, aliphatic OH units are more important in dioxane lignins than in Organosolv lignins. Furthermore, sugar analysis was conducted via HPLC, thermal analysis was conducted through DSC and TGA, and ash composition identification was done using ICP-OES. Notably, higher Mw and Mn values are determined by GPC for dioxane lignins than for Organosolv lignins.

Scaling Individual Tree Transpiration With Thermal Cameras Reveals Interspecies Differences to Drought Vulnerability

AbstractUnderstanding tree transpiration variability is vital for assessing ecosystem water‐use efficiency and forest health amid climate change, yet most landscape‐level measurements do not differentiate individual trees. Using canopy temperature data from thermal cameras, we estimated the transpiration rates of individual trees at Harvard Forest and Niwot Ridge. PT‐JPL model was used to derive latent heat flux from thermal images at the canopy‐level, showing strong agreement with tower measurements (R2 = 0.70–0.96 at Niwot, 0.59–0.78 at Harvard at half‐hourly to monthly scales) and daily RMSE of 33.5 W/m2 (Niwot) and 52.8 W/m2 (Harvard). Tree‐level analysis revealed species‐specific responses to drought, with lodgepole pine exhibiting greater tolerance than Engelmann spruce at Niwot and red oak showing heightened resistance than red maple at Harvard. These findings show how ecophysiological differences between species result in varying responses to drought and demonstrate that these responses can be characterized by deriving transpiration from crown temperature measurements.

Floristic changes following the chestnut blight may be delayed for decades.

A survey conducted in the 1920s, prior to the chestnut blight, indicated that chestnuts and oaks were codominant canopy species in White Oak Canyon, Shenandoah National Park, Virginia. A second survey in 1977 suggested that chestnuts were being replaced by tree species present before the blight, particularly oaks. In 2021, we resurveyed the 10 sites included in our 1977 survey and also recorded canopy and understory trees that grew above remnant chestnut sprouts. The canopy changed more substantially during the second interval (since 1977). Birch and maples were now more abundant. Hemlock declined, and oaks were less common in the canopy. In general, the trees considered as early to mid-successional have replaced oaks and hemlock. Chestnut sprouts have become much less common since 1977, presumably as repeated cycles of diebacks have weakened rootstocks. Those sites where chestnut sprouts have persisted until 2021 differed from neighboring sites without them. Chestnut sprouts were rare in sites with birch and hemlock; chestnut has persisted in locations with red oaks in the canopy and with few other understory competitors. This survey has been conducted over a longer time interval than previous studies that asked similar questions and our results suggest that changes to the forest composition following the loss of the American chestnut may be greater than previously recognized although the relative contribution of losing this codominant species is unclear.

Response of Root Respiration to Warming and Nitrogen Addition Depends on Tree Species.

Roots contribute a large fraction of CO2 efflux from soils, yet the extent to which global change factors affect root-derived fluxes is poorly understood. We investigated how red maple (Acer rubrum) and red oak (Quercus rubra) root biomass and respiration respond to long-term (15 years) soil warming, nitrogen addition, or their combination in a temperate forest. We found that ecosystem root respiration was decreased by 40% under both single-factor treatments (nitrogen addition or warming) but not under their combination (heated × nitrogen). This response was driven by the reduction of mass-specific root respiration under warming and a reduction in maple root biomass in both single-factor treatments. Mass-specific root respiration rates for both species acclimated to soil warming, resulting in a 43% reduction, but were not affected by N addition or the combined heated × N treatment.Notably, the addition of nitrogen to warmed soils alleviated thermal acclimation and returned mass-specific respiration rates to control levels. Oak roots contributed disproportionately to ecosystem root respiration despite the decrease in respiration rates as their biomass was maintained or enhanced under warming and nitrogen addition. In contrast, maple root respiration rates were consistently higher than oak, and this difference became critical in the heated × nitrogen treatment, where maple root biomass increased, contributing significantly more CO2 relative to single-factor treatments. Our findings highlight the importance of accounting for the root component of respiration when assessing soil carbon loss in response to global change and demonstrate that combining warming and N addition produces effects that cannot be predicted by studying these factors in isolation.

Reducing tree volume overestimation in quantitative structure models using modeled branch topology and direct twig measurements

Abstract Quantitative Structure Models (QSMs) are fit to tree point clouds to represent the topology of trees as a network of cylinders. QSMs allow for the calculation of metrics difficult to measure without destructive sampling, including total tree volume. Current limitations in terrestrial laser scanning technology make small branches difficult to accurately resolve, causing overestimation of small branch volume in QSMs, which can translate into overestimating tree biomass. We present a new method called Real Twig to correct overestimated small branch and twig cylinders in QSMs. Real Twig differs from current methods by using twig diameters measured directly from corresponding tree species to model a unique taper for every path in the QSM, using the QSM’s inherent branching topology, but without relying on predefined mathematical or allometric relationships. To test Real Twig, we generated QSMs for different sets of trees that had detailed dry mass and density measurements obtained via felling after scanning. QSM-based biomass estimates were obtained by multiplying the tree’s QSM-based volume estimate by the tree’s specific basic density value. We trained our method with high-quality data consisting of five northern red oak (Quercus rubra L.) and five red maple (Acer rubrum L.) trees, using two different versions of TreeQSM, a widely used algorithm for generating QSMs. We further tested our method on three publicly available datasets, including managed forests and large tropical trees, collected with both phase-shift or time-of-flight sensors. QSMs corrected with our Real Twig method showed a very large improvement in tree biomass estimation, with a relative mean error of −1.2%, a relative root mean square error of 10.5%, and a concordance correlation coefficient of 0.999, compared to a relative mean error 76.8%, a relative root mean square error of 48.7%, and a concordance correlation coefficient of 0.982, when using the standard outputs of TreeQSM.

First record of Biscogniauxia mediterranea (De Not.) Kuntze on Quercus rubra L. in Bulgaria

The endophytic fungus Biscogniauxia mediterranea, a causal agent of charcoal canker disease, was established for the first time on red oak (Quercus rubra) in Bulgaria. Symptomatic trees were found in 2023-2024 in the field protective forest belts planted in the State Hunting Enterprise Balchik (Sokolovo and Trigortsi villages) and State Forest Enterprise Dobrich (Kozloduytsi Village) in northeastern Bulgaria. Water stress during the last growing seasons seems to reduce red oak trees’ resistance and predispose them to be infected with the pathogen B. mediterranea. The disease has caused dieback of infected trees and increased their vulnerability to attacks by xylophagous insect pests.

Sustainable Lignin Extraction Using a Mild Acidic γ-Valerolactone Process for the Identification of White and Red Oaks.

Current wood identification struggles to differentiate white and red oak (Quercus alba and Quercus rubra) due to highly similar microstructures, as demonstrated by morphological microscope analysis. The present research explores lignin composition as a potential discriminating factor. Here, a rapid and sustainable method for extracting high-quality lignin from oak samples using acidic γ-valerolactone (GVL) under mild conditions is described. As-extracted lignin is thoroughly characterized using various analytical methods, and results reveal a distinct structural difference between the lignin from the two species. White oak lignin possesses a unique "Hibbert ketone" unit detectable by nuclear magnetic resonance spectroscopy (NMR), which is absent in red oak lignin. In addition, infrared spectroscopy differentiates the species based on specific carbonyl groups present in their lignin. These findings suggest that identifying the presence of the Hibbert ketone unit in lignin may offer a highly efficient and reliable method for differentiating white and red oak, opening new avenues for wood identification.

Factors affecting early red oak (Quercus rubra L.) regeneration near its northern distribution limit in Quebec

Red oak is an important species within the North American landscape, with climate change projections indicating a potential northward shift in its distribution. However, understanding the factors influencing its regeneration success at the northern limit remains limited. Site conditions and seed provenance adaptability may play critical roles. To bridge this knowledge gap, we conducted a seed transfer study in two northern red oak stands in Quebec. We firstly investigated stand regeneration history through dendrochronological characterization. Then, we monitored the survival and growth of saplings for four red oak provenances across a south-to-north gradient in field and greenhouse settings, with varying soil nutrient levels due to fertilization, and with or without protection from large herbivores. Results indicated that stands have similar age structures with red oak establishment coinciding with the last major fire disturbance in the early 1920s. However, tree species composition and density differed, suggesting differences in fire disturbance regime or ecological succession status prior to fire. Site had the largest influence on red oak regeneration, with the highest tree density and soil water availability site exhibiting a 29% higher survival rate. Protection against large herbivores also significantly impacted red oak seedling performance, leading to a 16% higher survival rate. Germination, survival and growth also significantly differed between provenances. The local (northernmost) provenance exhibited the poorest overall performance with 28 to 42% lower germination, survival and growth rates, while the two southernmost provenances exhibited superior germination and sprout survival. An increase in soil nutrient availability was beneficial to red oak in the greenhouse, but only marginally benefited survival and growth in the field, suggesting that this factor is of less importance than other factors (e.g., water and light availability) for red oak early regeneration. The findings of this study suggest that silvicultural efforts to favor red oak should focus on site and provenance selection, and that water availability is currently limiting red oak regeneration success at acorn and early seedling life stages (i.e., 1 year old seedlings) near its northern distribution limit.

Soilless Production of Lettuce (Lactuca sativa) in the Atacama Desert Using Fog Water: Water Quality and Produce Mineral Composition

Soilless vegetable production in the Atacama Desert of Northern Chile is spreading since it is perceived as an alternative that requires much less water than open field soil production. However, strong competition between mining and urban use for human population consumption exists, forcing growers to use alternative water sources. Fog is commonly present in the coastal areas of Northern Chile; however, little information exists with regards to its chemical composition and the effect on nutrient quality of the produce. To address this knowledge gap, a set of experiments was carried out in Chañaral, a small town located in the Atacama Desert of Northern Chile. There, a 200 m2 greenhouse equipped with twenty deep flow pools was used in two consecutive growing cycles. Water for the mixing of the nutrient solution was collected from the fog using fog-catchers and later stored in 2000-L tanks. Fog water quality (electrical conductivity, pH and mineral content) was monitored directly from the storage tanks. Two types of lettuce, green butterhead and red oak leaf, were compared on their yield and accumulation of nutrients and heavy metals. The results indicate that fog water is of good quality for soilless production, with an electrical conductivity value of 0.65 ± 0.18 and low content of heavy metals. Plants’ heavy metal accumulation is below the recommendation of Food and Agriculture Organization and World Health Organization. Fog water presents as a viable water source for soilless production in Northern Chile.

Interlaboratory Evaluation of Bretziella fagacearum Molecular Detection Assays to Guide the eDNA Monitoring of Oak Wilt Disease

ABSTRACTOak wilt disease, caused by the fungus Bretziella fagacearum, can kill mature red oaks within months of infection, severely affecting biodiversity, landscapes, and industries. The disease, originally only present in the United States, was officially reported for the first time in Canada in June 2023. The aim of this study was to suggest a standardized assay and sample processing method to optimize oak wilt detection both in infection centers and ahead of the disease front. Two previously published molecular assays, a Nested PCR and a TaqMan qPCR, were compared to detect B. fagacearum in a variety of samples in a ring trial across five laboratories. Sample types investigated included eDNA from trapped insect vectors (sorted insects and bulk content from traps), infested and healthy oak wood chips, and B. fagacearum conidia dilutions. Results demonstrated that both Nested and TaqMan assays can be used for molecular confirmation of oak wilt, and results are reproducible across different labs. There is a general agreement between both detection assays when testing true‐positive and true‐negative samples. Both methods demonstrated overall good accuracy. The TaqMan assay was more sensitive and detected lower amounts of DNA target. Both tests were 100% specific to oak wood samples, which was the best sample type to use for detection. In general, samples with high Cts were more prompted to yield false negative Nested results. Detecting oak wilt from bulk insect samples was by far more rapid than sorted sap beetles, but resulted in lower detection signals, especially with the Nested assay. The time‐period when the insect traps were set up also had considerable influence on detection results. We hope this study helps to formulate guidelines in oak wilt detection and biosurveillance management.

Comparing Drought Responses of Red Oak (Quercus rubra) and Red Maple (Acer rubrum) in Field-grown Nursery Production

Comparing Drought Responses of Red Oak (Quercus rubra) and Red Maple (Acer rubrum) in Field-grown Nursery Production

Assisted migration outcomes for oak species and seed sources in southern Ontario, Canada

IntroductionForest assisted migration has been proposed as a means to align tree populations with shifting climate habitats under climate change. Here we report on the growth and survival of oak species and seed sources at five assisted migration trials in southern Ontario – an important transition zone between boreal and temperate ecosystems.MethodsEach trial featured one or more oak species – including red oak (Quercus rubra), white oak (Q. alba), burr oak (Q. macrocarpa), and swamp white oak (Q. bicolor) – and seed sources from Ontario, Pennsylvania, and/or Tennessee. The trials were measured for survival and height at between 7 and 13 years after planting.ResultsFor several trials and species, southern seed sources performed nearly as well as local sources. However, southern seed sources of burr oak performed significantly worse than local sources at 2 trials in eastern Ontario. These outcomes may have been influenced by reduced quality of southern seed source planting stock at these trials.DiscussionOur findings generally support previous work that suggests northward movements of seed sources of several hundred kilometers may be safe for assisted migration efforts involving broadleaf tree species. Notably, the trial sites were located at the northern range limits of two oak species in this study (Q. alba and Q. bicolor), suggesting the potential for modest range expansions in this boreal-temperate transition zone. These findings help forest managers to better understand potential assisted migration outcomes under climate change.

Variation in vessel traits of northern red oak (Quercus rubra L.) provenances revealed high phenotypic plasticity to prevailing environmental conditions

Key messageRed oak provenances responded with high plasticity and intra-annual variability in vessel traits to studied climatic conditions, indicating weak signals of local adaptation and providing opportunities for forest management.The climate change-induced increase in frequency and severity of extreme events has revealed a high vulnerability of various major tree species in Europe, stressing the need for selecting climate-resilient species for forest management. In this context, adaptive strategies of northern red oak (Quercus rubra L.) were examined, using wood anatomical data derived from a provenance trial. We investigated the interannual variation in vessel traits of red oak provenances planted at three sites along a precipitation gradient in Germany. We compared the climate sensitivity of German provenances with those from North America to analyze plasticity and to identify signals of local adaptation in vessel traits. The results revealed variations in vessel traits between all sites, pointing to site-specific responses to prevailing environmental conditions. Differences between provenances were prevalent for vessel size-related traits, with site-specific higher values for German provenances at wet sites. Climate signals, which varied between traits, were strongest for vessel density and the relative conductive area. Vessel traits were found to depend both on previous-year conditions as and on spring climate conditions during the onset of vessel formation. The site-specific response in extreme years deviate significantly between drought and frost events. A trade-off between resistance to extremes and vessel diameter could not be demonstrated, and provenances with larger vessel diameters showed higher frost resistance. The observed high plasticity in vessel traits and the site-specific variation to climate influences point to an adjustment in vessel formation to the prevailing environmental conditions.

Propane Monooxygenases in Soil Associated Metagenomes Align Most Closely to those in the Genera Kribbella, Amycolatopsis, Bradyrhizobium, Paraburkholderia and Burkholderia.

Propanotrophs are a focus of interest because of their ability to degrade numerous environmental contaminants. To explore the phylogeny of microorganisms containing the propane monooxygenase gene cluster (prmABCD), NCBI bacterial genomes and publicly available soil associated metagenomes (from soils, rhizospheres, tree roots) were both examined. Nucleic acid sequences were collected only if all four subunits were located together, were of the expected length and were annotated as propane monooxygenase subunits. In the bacterial genomes, this resulted in data collection only from the phyla Actinomycetota and Pseudomonadota. For the soil associated metagenomes, reads from four studies were subject to quality control, assembly and annotation. Following this, the propane monooxygenase subunit nucleic acid sequences were collected and aligned to the collected bacterial sequences. In total, forty-two propane monooxygenase gene clusters were annotated from the soil associated metagenomes. The majority aligned closely to those from the Actinomycetota, followed by the Alphaproteobacteria, then the Betaproteobacteria. Actinomycetota aligning propane monooxygenase sequences were obtained from all four datasets and most closely aligned to the genera Kribbella and Amycolatopsis. Alphaproteobacteria aligning sequences largely originated from metagenomes associated with miscanthus and switchgrass rhizospheres and primarily aligned with the genera Bradyrhizobium, Acidiphilium and unclassified Rhizobiales. Betaproteobacteria aligning sequences were obtained from only the Red Oak root metagenomes and primarily aligned with the genera Paraburkholderia, Burkholderia and Caballeronia. Interestingly, sequences from the environmental metagenomes were not closely aligned to those from well-studied propanotrophs, such as Mycobacterium and Rhodococcus. Overall, the study highlights the previously unreported diversity of putative propanotrophs in environmental samples. The common occurrence of propane monooxygenase gene clusters has implications for their potential use for contaminant biodegradation.

Constructing sympatry networks to assess potential introgression pathways within the major oak sections in the contiguous US states

Societal Impact StatementIncreasing evidence indicates gene flow commonly occurs between closely related species in diverse plant genera and can involve numerous species. Here, we present a simple method to quantify and characterize the potential for gene flow among “sympatric” species (they share some part of their geographic distribution), using oaks as a case study. The resulting sympatry networks provide insight into potential interspecific gene flow, from the perspective of each species and across the entire suite of interfertile species. In a rapidly changing world, interspecific gene flow will play an increasingly important role in the conservation of endangered species, both positive and negative.Summary We provide a simple method, using geographic distribution data, to quantify and characterize sympatry networks among a suite of interfertile species to assess potential routes for introgressive hybridization (IH). Sympatry is a necessary condition for IH and is easily determined from widely available geographic distribution data. Oaks, famous for hybridization, present an excellent case study. We use county‐level data for 94 oak species in the contiguous US states to determine patterns of sympatry of species within the four sections, assumed to be interfertile. The pairwise sympatry relationships can generate species‐centric local networks or a syngameon‐wide network. Two different measures of sympatry are used: proportional and relative. Most oak species are exposed to IH from many species, with red oaks having slightly higher local levels of sympatry (5.7 vs. 3.8 spp per county) than white oaks but lower total numbers of sympatric species (13.7 vs. 14.8). The nature of potential IH generally differs for threatened species, which are often embedded in the much larger distributions of widespread species. Potential IH within oak sections is widespread and disproportionately affects rare species. Given that IH has potentially positive or negative impacts on species cohesion, persistence, and adaptation, the geographic connections among species and the ‘local sympatry effect’ can serve as a springboard for hypothesis generation and genetic investigation of introgression patterns.