Defect-based single photon emitters play an important role in quantum information technologies. Quantum emitters in technologically mature direct wide bandgap semiconductors, such as nitrides, are attractive for on-chip photonic integration. GaN has recently been reported to host bright and photostable defect single photon emitters in the 600–700 nm wavelength range. Spectral diffusion caused by local electric field fluctuation around the emitter limits the photon indistinguishability, which is a key requirement for quantum applications. In this work, we investigate the spectral diffusion properties of GaN defect emitters integrated with a solid immersion lens, employing both spectral domain and time domain techniques through spectroscopy and photon autocorrelation measurements at cryogenic temperature. Our results show that the GaN defect emitter at 10 K exhibits a Gaussian line shape with a linewidth of ∼1 meV while the spectral diffusion characteristic time falls within the range of a few hundred nanoseconds to a few microseconds. We study the dependency of the spectral diffusion rate and Gaussian linewidth on the excitation laser power. Our work provides insight into the ultrafast spectral diffusion in GaN defect-based single photon emitter systems and contributes toward harnessing the potential of these emitters for applications, especially for indistinguishable single photon generation.