Rate-limiting Step Research Articles

Desymmetrization of Inert meso-Diethers through Copper-Catalyzed Asymmetric Allylic Alkylation with Grignard Reagents.

We have developed a highly regio-, diastereo-, and enantioselective Cu-catalyzed desymmetrization of inert meso-diethers using Grignard reagents. Moreover, previous inaccessible sterically hindered organometallic reagents are realized in the reaction with broad secondary alkyl Grignard reagents. Finally, detailed control experiments and density functional theory calculations revealed the desymmetrization of meso-diethers exploits a direct anti-SN2' pathway, in the absence of an in situ-generated allyl bromine intermediate. The following oxidative addition is the crucial rate-determining and enantioselectivity-determining step.

Pulsed laser induced plasma and thermal effects on molybdenum carbide for dry reforming of methane

Dry reforming of methane (DRM) is a highly endothermic process, with its development hindered by the harsh thermocatalytic conditions required. We propose an innovative DRM approach utilizing a 16 W pulsed laser in combination with a cost-effective Mo2C catalyst, enabling DRM under milder conditions. The pulsed laser serves a dual function by inducing localized high temperatures and generating *CH plasma on the Mo2C surface. This activates CH4 and CO2, significantly accelerating the DRM reaction. Notably, the laser directly generates *CH plasma from CH4 through thermionic emission and cascade ionization, bypassing the traditional step-by-step dehydrogenation process and eliminating the rate-limiting step of methane cracking. This method maintains a carbon-oxygen balanced environment, thus preventing the deactivation of the Mo2C catalyst due to CO2 oxidation. The laser-catalytic DRM achieves high yields of H2 (14300.8 mmol h−1 g−1) and CO (14949.9 mmol h−1 g−1) with satisfactory energy efficiency (0.98 mmol kJ−1), providing a promising alternative for high-energy-consuming catalytic systems.

Coronin 2B deficiency induces nucleolar stress and neuronal apoptosis

In eukaryotes, the nucleolus is the critical non-membranous organelle within nuclei that is responsible for ribosomal DNA (rDNA) transcription and ribosome biogenesis. The transcription of rDNA, a rate-limiting step for ribosome biogenesis, is tightly regulated to meet the demand for global protein synthesis in response to cell physiology, especially in neurons, which undergo rapid changes in morphology and protein composition during development and synaptic plasticity. However, it is unknown how the pre-initiation complex for rDNA transcription is efficiently assembled within the nucleolus in neurons. Here, we report that the nucleolar protein, coronin 2B, regulates rDNA transcription and maintains nucleolar function through direct interaction with upstream binding factor (UBF), an activator of RNA polymerase I transcriptional machinery. We show that coronin 2B knockdown impairs the formation of the transcription initiation complex, inhibits rDNA transcription, destroys nucleolar integrity, and ultimately induces nucleolar stress. In turn, coronin 2B-mediated nucleolar stress leads to p53 stabilization and activation, eventually resulting in neuronal apoptosis. Thus, we identified that coronin 2B coordinates with UBF to regulate rDNA transcription and maintain proper nucleolar function in neurons.

Engineering strategies for enhanced 1′, 4′-trans-ABA diol production by Botrytis cinerea

BackgroundCurrently, industrial fermentation of Botrytis cinerea is a significant source of abscisic acid (ABA). The crucial role of ABA in plants and its wide range of applications in agricultural production have resulted in the constant discovery of new derivatives and analogues. While modifying the ABA synthesis pathway of existing strains to produce ABA derivatives is a viable option, it is hindered by the limited synthesis capacity of these strains, which hinders further development and application.ResultsIn this study, we knocked out the bcaba4 gene of B. cinerea TB-31 to obtain the 1′,4′-trans-ABA-diol producing strain ZX2. We then studied the fermentation broth of the batch-fed fermentation of the ZX2 strain using metabolomic analysis. The results showed significant accumulation of 3-hydroxy-3-methylglutaric acid, mevalonic acid, and mevalonolactone during the fermentation process, indicating potential rate-limiting steps in the 1′,4′-trans-ABA-diol synthesis pathway. This may be hindering the flow of the synthetic pathway. Additionally, analysis of the transcript levels of terpene synthesis pathway genes in this strain revealed a correlation between the bchmgr, bcerg12, and bcaba1-3 genes and 1′,4′-trans-ABA-diol synthesis. To further increase the yield of 1′,4′-trans-ABA-diol, we constructed a pCBg418 plasmid suitable for the Agrobacterium tumefaciens-mediated transformation (ATMT) system and transformed it to obtain a single-gene overexpression strain. We found that overexpression of bchmgr, bcerg12, bcaba1, bcaba2, and bcaba3 genes increased the yield of 1′,4′-trans-ABA-diol. The highest yielding ZX2 A3 strain was eventually screened, which produced a 1′,4′-trans-ABA-diol concentration of 7.96 mg/g DCW (54.4 mg/L) in 144 h of shake flask fermentation. This represents a 2.1-fold increase compared to the ZX2 strain.ConclusionsWe utilized metabolic engineering techniques to alter the ABA-synthesizing strain B. cinerea, resulting in the creation of the mutant strain ZX2, which has the ability to produce 1′,4′-trans-ABA-diol. By overexpressing the crucial genes involved in the 1′,4′-trans-ABA-diol synthesis pathway in ZX2, we observed a substantial increase in the production of 1′,4′-trans-ABA-diol.

Theoretical investigations of Co-catalyzed allylic aminations

Cobalt-bisoxazolinephosphine-catalyzed regio- and enantioselective allylic amination of racemic n-propyl allylic carbonate and aniline was investigated by DFT calculations at the ωB97XD/6–31G(d,p) level (SDD for Co). The computational results revealed that cobalt-catalyzed allylic amination underwent mainly through oxidative addition of n-propyl allylic carbonate, coordination of aniline to cobalt, hydrogen migration, isomerization of allyl group, and reductive elimination. The oxidative addition of n-propyl allylic carbonate was the rate-determining step, the reductive elimination was the regioselectivity-limited and enantioselectivity-controlling step, and the most favorable product was of (R)-chirality, which was compatible with the experimental results. The oxidative addition, hydrogen migration, reductive elimination, and the reactivity of racemic n-propyl allylic carbonates were discussed at full length in this text.

Ultrathin Ni-Fe MOF Nanosheets: Efficient and Durable Water Oxidation at High Current Densities.

Efficient, durable, and economical electrocatalysts are crucial for advancing energy technology by facilitating the oxygen evolution reaction (OER). Here, ultrathin Ni-Fe metal-organic skeleton (MOF) nanosheets were created in situ on nickel foam (NiFe-UMNs/NF). The catalyst exhibited excellent OER catalytical abilities, with only 269 mV overpotentials at 250 mA cm-2. Besides, when integrated with Pt/C/NF, NiFe-UMNs/NF held the potential for application in industrial alkaline water electrolysis with an initial voltage retention of approximately 86% following a continuous operation of 100 h at a current density of 250 mA cm-2. The super performance of the NiFe-UMNs/NF catalyst was attributed to ultrathin morphology, super hydrophilicity, and synergistic effects between Ni and Fe within the MOF. In situ Raman showed that NiFe-UMNs were converted to NiFeOOH as the active species in the OER process. Density functional theory revealed that iron doping accelerated the rate-determining step and reduced the OER reaction energy barrier. This work elucidated a promising electrocatalyst for OER and enriched the practical implementation of MOF materials.

Theoretical investigation on diastereoselective [2+2] cycloaddition and Pd-catalyzed enantioselective [3+2] cycloaddition for synthesis of cis-β-lactam and exo-furobenzopyranone

The mechanism is investigated for Wolff rearrangement/Staudinger [2+2] cycloaddition cascade and Pd-catalyzed, decarboxylative, formal [3+2] cycloaddition. Wolff rearrangement of 3-diazotetramic acid is determined to be rate-limiting step generates cyclic acyl ketene. The interaction of ketene with imine firstly results in zwitterion followed by conrotatory cyclization giving major cis-β-lactam. For synthesis of s-VECs, the epoxidation−cyclization cascade and hydrolysis give precursor of better performing exocyclic derivative. The reaction with 3-cyanochromone includes decarboxylation, nucleophilic attack and subsequent ring closure yielding 5-exo-trig furobenzopyranone. Based on the comparison between possible paths, the diastereoselectivity of cis over trans and regio-divergence of 5-exo-trig over 7-endo-trig are both kinetically controlled for [2+2] and [3+2] cycloaddition in common. The positive solvation effect is suggested by decreased absolute and activation energies in chlorobenzene and chloroform solution compared with in gas. These results are supported by Multiwfn analysis on FMO composition of specific TSs, and MBO value of vital bonding, breaking.

Unraveling the influence of oxygen vacancies in MoOx catalysts on CO2 hydrogenation

Oxygen vacancies in oxides are core parameters determining the catalytic performance in various reactions. This study investigated the influence of oxygen vacancies of MoOx catalysts on the reverse water gas shift (RWGS) reaction to gain a deep insight into the structure–function relationship. A distinct volcano-shaped trend was observed among MoOx catalysts with different amounts of oxygen vacancies. Through comprehensive characterizations and steady-state kinetic analysis, an optimal concentration of oxygen vacancies was identified to not only facilitate the adsorption and activation of CO2 but also restrain the formation of by-product CH4. In-situ characterizations combined with DFT calculations uncovered a formate-involved reaction pathway over the oxygen vacancies structured MoOx catalyst, with the hydrogenation of formate identified as the rate-determining step. These findings not only showcase the potential of Mo-based oxides in CO2 hydrogenation reactions but also provide fundamental insights into the role of oxygen vacancies in shaping catalytic behavior.

Update on heme biosynthesis, tissue-specific regulation, heme transport, relation to iron metabolism and cellular energy.

Heme is a primordial macrocycle upon which most aerobic life on Earth depends. It is essential to the survival and health of nearly all cells, functioning as a prosthetic group for oxygen-carrying proteins and enzymes involved in oxidation/reduction and electron transport reactions. Heme is essential for the function of numerous hemoproteins and has numerous other roles in the biochemistry of life. In mammals, heme is synthesised from glycine, succinyl-CoA, and ferrous iron in a series of eight steps. The first and normally rate-controlling step is catalysed by 5-aminolevulinate synthase (ALAS), which has two forms: ALAS1 is the housekeeping form with highly variable expression, depending upon the supply of the end-product heme, which acts to repress its activity; ALAS2 is the erythroid form, which is regulated chiefly by the adequacy of iron for erythroid haemoglobin synthesis. Abnormalities in the several enzymes of the heme synthetic pathway, most of which are inherited partial enzyme deficiencies, give rise to rare diseases called porphyrias. The existence and role of heme importers and exporters in mammals have been debated. Recent evidence established the presence of heme transporters. Such transporters are important for the transfer of heme from mitochondria, where the penultimate and ultimate steps of heme synthesis occur, and for the transfer of heme from cytoplasm to other cellular organelles. Several chaperones of heme and iron are known and important for cell health. Heme and iron, although promoters of oxidative stress and potentially toxic, are essential cofactors for cellular energy production and oxygenation.

Enhanced degradation of post-consumer polyethylene terephthalate (PET) wastes by fusion cutinase: Effects of anchor and linker peptides

Enzymatic degradation of poly(ethylene terephthalate) (PET) into its corresponding monomers provides an attractive route for green plastic recycling and environmental remediation applications. However, the binding of PET hydrolases toward the PET surface is a rate-limiting step in PET degradation. Hence, we selected three anchor peptides and four linker peptides to fuse the previously engineered leaf-branch compost cutinase for facilitating enzyme binding and improving degradation of real post-consumer PET wastes of Coca Cola and C′eastbon PET bottles, with using the amorphous PET as a control. The systematical characterization of the seven cutinases revealed that the anchor peptide with moderate hydrophobicity plus chaperone activity and the flexible linker peptide with small hydrophobicity but long length were more suitable for each domain to serve its own role, affording the facilitated PET binding affinities and enhanced PET degradation performance. Thus, the optimal fusion cutinase possessed up to 3.3 times higher catalytic efficiency (kcat/Km) and 76 % increased long-term degradation performance than the parental cutinase, respectively. Further, complete degradation of C′eastbon PET wastes and 77 % degradation of Coca Cola PET wastes were achieved by the optimal cutinase of 33.3 nmol·g−1PET in 96 h, proving its superiority against the real post-consumer PET wastes.

Stirred-electrodeposition construction of porous Fe-doped NiSe nanoclusters as a bifunctional catalyst for water splitting

The electrodeposition method is commonly used for fabricating water splitting catalysts. Traditional methods assume a static precursor solution, ignoring the effects of solution dynamics. We theorized that stirring the solution during electrodeposition could improve mass transfer and current distribution, thereby enhancing electrochemical kinetics and nucleation. Consequently, we developed a novel electrodeposition technique to synthesize Fe-doped NiSe, an effective catalyst for alkaline water hydrolysis, demonstrating exceptional performance and stability. This catalyst notably decreases the overpotentials for OER and HER to 185/266 mV and 101/271 mV at 10 and 300 mA cm−2, respectively. At the same time, the overall water splitting system comprising this catalyst requires only a low potential of 1.48 V to stably catalyze water splitting for over 60 hours. Electrochemical tests indicate that stirred deposition endows the catalyst with a larger electrochemically active area. In-situ Raman spectroscopy reveals NiOOH as an active phase, and Fe doping facilitates NiOOH formation at lower overpotentials, enhancing OER performance. First-principles calculations suggest that Fe doping optimizes the rate-determining step, lowers the activation energy for the OER process, and boosts conductivity. This study presents a method to improve OER efficiency in Ni-based catalysts, offering insights into mechanism control.

Investigation of the adsorption performance and mechanism of multi-source mineral composite calcination materials on heavy metal ions

To address the challenges of plume generation and the release of heavy metal ions caused by deep-sea mining operations, this study utilized multi-source minerals, including steel slag (SS), oceanic manganese nodules (OMN), attapulgite (AT), and sawdust (SD), to fabricate a multi-source mineral composite calcination material (MMCCM) through a sintering process, and then the preliminary heavy metal ion adsorption experiment was carried out. The results indicated that both Langmuir and Freundlich models can describe the adsorption behavior of Cu2+ in a single system, while the Freundlich model was more applicable in competitive systems. The adsorption of Co2+ and Ni2+ consistently aligned with the Langmuir model across all systems. The adsorptive behavior conformed to pseudo-second-order kinetics, indicating that chemisorption played a leading role. The intraparticle diffusion was the principal rate-limiting step, and the adsorption process was spontaneous. BET, TG-DTG, SEM-EDS, XRD, FT-IR and XPS elucidated that surface physical adsorption, ion exchange, complexation with functional groups, electrostatic attraction, and co-precipitation, which were the predominant adsorption mechanisms for MMCCM. Evaluations of regenerability, economy, security, and suitability demonstrated that MMCCM is an eco-friendly adsorbent, which provides materials and data support for future heavy metal marine sewage treatment, especially for immobilizing heavy metal in deep-sea sediments.

SmartEM: machine-learning guided electron microscopy.

Connectomics provides essential nanometer-resolution, synapse-level maps of neural circuits to understand brain activity and behavior. However, few researchers have access to the high-throughput electron microscopes necessary to generate enough data for whole circuit or brain reconstruction. To date, machine-learning methods have been used after the collection of images by electron microscopy (EM) to accelerate and improve neuronal segmentation, synapse reconstruction and other data analysis. With the computational improvements in processing EM images, acquiring EM images has now become the rate-limiting step. Here, in order to speed up EM imaging, we integrate machine-learning into real-time image acquisition in a single-beam scanning electron microscope. This SmartEM approach allows an electron microscope to perform intelligent, data-aware imaging of specimens. SmartEM allocates the proper imaging time for each region of interest - scanning all pixels equally rapidly, then re-scanning small subareas more slowly where a higher quality signal is required to achieve accurate segmentability, in significantly less time. We demonstrate that this pipeline achieves a 7-fold acceleration of image acquisition time for connectomics using a commercial single-beam SEM. We apply SmartEM to reconstruct a portion of mouse cortex with the same accuracy as traditional microscopy but in less time.

221-OR: Skeletal Muscle Insulin Resistance—The Rate-Limiting Step in Humans Is at the Level of the Vasculature

221-OR: Skeletal Muscle Insulin Resistance—The Rate-Limiting Step in Humans Is at the Level of the Vasculature

Round-the-Clock Adsorption-Degradation of Tetracycline Hydrochloride by Ag/Ni-TiO2.

The synergy of adsorption and photocatalysis is a good method to remove organic pollutants in wastewater. In recent decades, persistent photocatalysis has gained considerable interest for its ability to sustain the catalytic degradation of organic pollutants in the dark. Herein, we report three different TiO2 nanomaterials to remove tetracycline hydrochloride (TCH) in solution. We found that the removal ability of TiO2, Ni-TiO2, and Ag/Ni-TiO2 is 8.8 mg/g, 13.9 mg/g and 23.4 mg/g, respectively, when the initial concentration of TCH is 50 mg/L. Chemical adsorption could be the rate-determining step in the TCH adsorption process. Moreover, Ag nanoparticles dispersed on Ni doped TiO2 surface act as traps to capture photo-generated electrons upon illumination with indoor light. The holes in Ag/Ni-TiO2 serve as critical oxidative species in TCH degradation under dark conditions. This work provides new insights into the design of persistent photocatalysts that can be activated by weak illumination and degrade organic pollutants in wastewater after sunset.

Computational Insights into Protein Aging: Spontaneous Deamidation of Glutamine.

Spontaneous deamidation of amino acids is a physiologically important process, particularly for protein aging and diseases. Despite its widespread occurrence, the mechanism of glutamine deamidation particularly within proteins remains poorly understood. We have used a multiscale computational approach to investigate glutamine deamidation in the tripeptide Glycine-Glutamine-Glycine (Gly-Gln-Gly) and γS-Crystallin protein. Specifically, both the 5- and 6-membered water-assisted deamidation pathways in the tripeptide have been elucidated and compared. Both are found to occur in three stages: iminol formation, cyclization, and deamination. The rate-limiting step in each mechanism is nucleophilic attack of the backbone iminol nitrogen, formed in the first stage, at the glutamine's side-chain carbonyl carbon. For the 6- and 5-membered mechanisms, this occurs with a free energy cost of 136.4 and 179.5 kJ mol-1, respectively. Thus, overall, in the Gly-Gln-Gly tripeptide, the 6-membered pathway is preferred. Furthermore, the free energies for forming cyclic intermediates and products at selected Gln residues (based on experimentally reported % deamidation) in γS-Crystallin have been obtained. It is found that the 5-membered product complex is exergonic at -25.3 kJ mol-1, while the 6-membered product complex is calculated to be endergonic at 90.7 kJ mol-1. Thus, the deamidation pathway in folded and constrained proteins may not exclusively follow the 6-membered route. Molecular dynamics (MD) simulations of γS-Crystallin indicate that deamidation is more likely to occur when two or more water molecules are in the proximity of the glutamine residue. Consequently, significant conformational changes are found to accompany Gln120 deamidation in γS-Crystallin. This in turn can influence water availability at the other Gln residues considered and hence potentially their deamidation. Collectively, these results provide comprehensive insights into spontaneous water-assisted deamidation of glutamine residues in peptides and into the role and impact of Gln deamidation in proteins.

Surface characteristics and adsorption properties of polypropylene microplastics by ultraviolet irradiation and natural aging

The vast application and deep integration of plastic commodity with our human lives raise a great concern about the ubiquitous microplastics (MPs) in nature, yet the environmental behavior of MPs remain unclear. As a main type and candidate of MPs, pristine polypropylene MPs (PP-MP-Pris), as well as the influence of ultraviolet (UV) irradiation on the degree of aging and surface characteristics, were characterized quantitatively by Fourier infrared spectroscopy, scanning electron microscopy, contact angle meter, automatic specific surface area and pore analyzer and laser particle analyzer, with natural aged PP-MPs (PP-MP-Age) as comparison. The carbonyl index (CI) of UV aged PP-MPs (PP-MP-U) was increased with extension of exposure time, while biofilm with abundant functional groups and the maximum CI value were the characteristics of PP-MP-Age. Moreover, the adsorption capacity of PP-MP-U for crystal violet (CV) was increased and reached the maximum after 30 days, while that of PP-MP-Age was weakened, probably due to the enhanced hydrophilicity and the shedding of calcium carbonate (CaCO3) during the natural aging process, which was demonstrated by hydrochloric acid treatment, indicating the vital involvement of CaCO3. Moreover, the better fitting to PSO kinetics and Freundlich isotherm models indicated that the multilayered and non-homogeneous surface adsorption was acted as the rate-controlling step. Furthermore, the positive values of ΔGθ, ΔHθ and ΔSθ indicated that the adsorption was a non-spontaneous, endothermic process with increased degree of the freedom on the interface of PP-MPs and CV solution. The presence of divalent salts inhibited CV adsorption, demonstrating that electrostatic attraction played a major role in CV capture. The hydrophobic interaction, micropore filling, hydrogen bonding, and π - π conjugation were possible involved. This study is of great significance for better understanding the complex pollution of MPs and its potential environmental risks in the future.

Iron as recyclable metal fuel: Unraveling oxidation behavior and cyclization effects through thermogravimetric analysis, wide-angle X-ray scattering and Mössbauer spectroscopy.

The carbon-free chemical storage and release of renewable energy is an important task to drastically reduce CO2 emissions. The high specific energy density of iron and its recyclability makes it a promising storage material. Energy release by oxidation with air can be realized by the combustion of micron-sized iron powders in retro-fitted coal fired power plants and in fixed-bed reactors under milder conditions. An experimental parameter study of iron powder oxidation with air was conducted based on thermogravimetric analysis in combination with wide-angle X-ray scattering and Mössbauer spectroscopy. In agreement with literature the oxidation was found to consist of a very fast initial oxidation of the outer particle layer followed by much slower oxidation due to diffusion of iron ions through the Fe2O3/Fe3O4 layer being the ratelimiting step. Scanning electron microscopy analysis of the iron particle before and after oxidation reveal a strong particle morphology transformation. This impact on the reaction was studied by cyclization experiments. Up to 10 oxidation-reduction cycles show that both, oxidation and reduction rates, increase strongly with cycling due to increased porosity.

Optimization of Electrochemical Reduction of Biomass Derived 5-Hydroxymethylfurfural (HMF): A Volcano Plot and Bimetallic Catalysts.

2,5-bis(hydroxymethyl)furan (BHMF) derived from 5-Hydroxymethylfurfural (HMF) through a hydrogenation process has extensive applications in the production of resins, polymers, and artificial fibers. However, screening out the candidate and then modulating the active site to optimize the catalyst for high yield of BHMF are currently insufficient. In this study, Gibbs free energy diagrams of the reduction of HMF on 13 metals were presented, along with the identification of the rate-determining step (RDS) with the highest reaction barrier for each metal. We attempted to construct a volcano plot for HMFRR reaction. Additionally, a strategy was proposed to adjust the reaction barriers of RDS by combining two appropriate metals. Further experiments confirmed that Pb with the lowest energy barrier exhibited the highest HMF conversion (BHMF selectivity) among single metals. The modified catalyst by doping Ag on Pb, further boosted the HMF conversion (BHMF selectivity) from 42.1% (59.4%) to 80.8% (80.9%), respectively. These results provide an approach to rationally design and construct the catalyst system for efficient conversion of HMF.

Enhanced boron removal via seed-induced crystal growth of barium perborate in sequential fluidized-bed crystallization

Chemical oxo-precipitation (COP) is an enhanced precipitation method for boron removal with the conversion of boric acid to perborate anions. When using barium-based precipitant, the boron can be effectively precipitated as barium perborates (BaPBs). The phase transformation of BaPBs from amorphous (A-BaPB, Ba(B(OH)3OOH)2) to crystalline (C–BaPB, BaB2(OO)2(OH)4) form is crucial for effective boron removal. However, scaling up this phase transformation of BaPBs is hindered by poor diffusion. This study aims to promote the growth of C–BaPB through seed-induced crystal growth, eliminating the need for phase transformation. By examining the relationship between crystal growth rate and supersaturation, surface spiral growth was identified as the rate-limiting step of the growth of micron-sized seeds near pHpzc. To enable continuous crystal growth, granular seeds of C–BaPB were prepared and employed as the medium for fluidized-bed crystallization (FBC). The system reached steady state 3 hydraulic retention times, achieving 90% boron removal. The effect of surface loading, ionic strength, and dosages on steady-state crystal growth rate was studied, revealing a shift of the rate-limiting step in FBC to diffusion. Lastly, the system that constituted of two FBCs in-series for sequential crystallization of A-BaPB and C–BaPB was demonstrated. The integrated system provided 97.8% of boron removal from synthetic wastewater containing 500 mg-B/L, with 92.3% of boron crystallized on the granular seeds of BaPBs.