Rate-limiting Step Research Articles

Activated carbons prepared from stump wood of various tree species by chemical activation and their application for water purification

AbstractActivated carbons (ACs) were produced from stump wood of different tree species, such as pine, bearded birch, and American black cherry using chemical activation with KOH and NaOH. The activated carbons were characterized and evaluated as adsorbents for eliminating bisphenol A (BPA) from aqueous solutions. The kinetics of adsorption and equilibrium adsorption, as well as the impact of solution pH and ionic strength, were examined. The kinetics were analyzed using the pseudo-first-order, pseudo-second-order, intra-particle diffusion, and Boyd kinetic models. The findings suggest that the adsorption kinetics followed the pseudo-second-order model. Additionally, the film diffusion was found to be the rate-determining step for the adsorption of BPA on all of the activated carbons. The data for adsorption equilibrium were tested using the Langmuir, Freundlich, and Sips equations, with results indicating that the Langmuir model was the most applicable. The capacity of activated carbons to adsorb BPA was dependent on their surface area. Higher BET surface areas resulted in increased adsorption. The birch-derived AC activated by NaOH had a monolayer adsorption capacity of 1.980 mmol/g, while the AC from black cherry activated with KOH had 2.195 mmol/g. The adsorption of BPA was pH-dependent, and no effect of ionic strength was observed. The activated carbons had very high adsorption capacities, indicating that stump wood is an excellent precursor for the production of highly effective adsorbents.

Evolution of promoter-proximal pausing enabled a new layer of transcription control.

Promoter-proximal pausing of RNA polymerase II (Pol II) is a key regulatory step during transcription. Despite the central role of pausing in gene regulation, we do not understand the evolutionary processes that led to the emergence of Pol II pausing or its transition to a rate-limiting step actively controlled by transcription factors. Here we analyzed transcription in species across the tree of life. Unicellular eukaryotes display a slow acceleration of Pol II near transcription start sites that transitioned to a longer-lived, focused pause in metazoans. This event coincided with the evolution of new subunits in the NELF and 7SK complexes. Depletion of NELF in mammals shifted the promoter-proximal buildup of Pol II from the pause site into the early gene body and compromised transcriptional activation for a set of heat shock genes. Our work details the evolutionary history of Pol II pausing and sheds light on how new transcriptional regulatory mechanisms evolve.

Dephosphorylation and ion binding in prokaryotic calcium transport

Calcium (Ca 2+ ) signaling is fundamental to cellular processes in both eukaryotic and prokaryotic organisms. While the mechanisms underlying eukaryotic Ca 2+ transport are well documented, an understanding of prokaryotic transport remains nascent. LMCA1, a Ca 2+ adenosine triphosphatase (ATPase) from Listeria monocytogenes , has emerged as a prototype for elucidating structure and dynamics in prokaryotic Ca 2+ transport. Here, we used a multidisciplinary approach integrating kinetics, structure, and dynamics to unravel the intricacies of LMCA1 function. A cryo–electron microscopy (cryo-EM) structure of a Ca 2+ -bound E1 state showed ion coordination by Asp 720 , Asn 716 , and Glu 292 . Time-resolved x-ray solution scattering experiments identified phosphorylation as the rate-determining step. A cryo-EM E2P state structure exhibited remarkable similarities to a SERCA1a E2-P* state, which highlights the essential role of the unique P-A domain interface in enhancing dephosphorylation rates and reconciles earlier proposed mechanisms. Our study underscores the distinctiveness between eukaryotic and prokaryotic Ca 2+ ATPase transport systems and positions LMCA1 as a promising drug target for developing antimicrobial strategies.

DFT Investigation on Palladium-Catalyzed [2 + 2 + 1] Spiroannulation between Aryl Halides and Alkynes: Mechanism, Base Additive Role, and Solvent and Ligand Effects.

Transition metal-catalyzed spiroannulations are practical strategies for constructing spirocyclic skeletons of pharmaceutical and biological significance, yet the microscopic mechanism still lacks in-depth explorations. Here, the palladium-catalyzed [2 + 2 + 1] spiroannulation between aryl halides and alkynes was studied by employing the density functional theory (DFT) method. Based on comprehensive explorations on a couple of possible reaction pathways, it is found that the reaction probably experiences C-I oxidative addition, alkyne migration insertion, Cs2CO3-assisted aryl C-H activation, C-Br bond oxidative addition, C-C coupling, arene dearomatization and reductive elimination in sequence and leads to the formation of the spiro[4,5]decane pentacyclic product (P) ultimately. Among these, the C-Br bond oxidative addition step acts as the rate-determining step (RDS) of the whole reaction, featuring a practical free energy barrier of 32.4 kcal·mol-1 at 130 °C. Computationally predicted kinetics such as half-life transferred from the RDS step's barrier on the optimal reaction pathway (1.2 × 101 h) coincides well with corresponding experimental results (91% yield of the spiro[4,5]decane pentacyclic product P after reacting 10 h at 130 °C). In addition, theoretical predictions regarding the solvent/ligand effects and base additive role in the reaction, rationalized by distortion-interaction/natural population/noncovalent interaction analyses, are also in good agreement with experimental data and trend. This good agreement between experiment and theory makes sense for new designations and further experimental improvements of such Pd-catalyzed transformations.

NiIr nanowireassembles as an efficient electrocatalyst towards oxygen evolution reaction in both acid and alkaline media.

Oxygen evolution reaction (OER) is the rate-limiting step in water electrolysis due to its sluggish kinetic, and it is challenging to develop an OER catalyst that could work efficiently in both acid and alkaline environment. Herein, NiIr nanowire assembles (NAs) with unique nanoflower morphology were prepared by a facile hydrothermal method. As a result, the NiIr NAs exhibited superior OER activity in both acid and alkaline media. Specifically, in 0.1 M HClO4, NiIr NAs presented a superior electrocatalytic performance with a low overpotential of merely 242 mV at 10 mA cm-2 and a Tafel slope of only 58.1 mV dec-1, surpassing that of commercial IrO2 and pure Ir NAs. And it achieved a significantly higher mass activity of 148.40 A/g at -1.5 V versus RHE. In 1.0 M KOH, NiIr NAs has an overpotential of 291 mV at 10 mA cm-2 and a Tafel slope of 42.1 mV dec-1. Such remarkable activity makes the NiIr NAs among the best of recently reported representative Ir-based OER electrocatalysts. Density functional theory (DFT) calculations confirmed alloying effect promotes surface bonding of NiIr with oxygen-containing reactants, resulting in excellent catalytic properties.

Filament structures unveil the dynamic organization of human acetyl-CoA carboxylase.

Human acetyl-coenzyme A (CoA) carboxylases (ACCs) catalyze the carboxylation of acetyl-CoA, which is the rate-limiting step in fatty acid synthesis. The molecular mechanism underlying the dynamic organization of ACCs is largely unknown. Here, we determined the cryo-electron microscopy (EM) structure of human ACC1 in its inactive state, which forms a unique filament structure and is in complex with acetyl-CoA. We also determined the cryo-EM structure of human ACC1 activated by dephosphorylation and citrate treatment, at a resolution of 2.55 Å. Notably, the covalently linked biotin binds to a site that is distant from the acetyl-CoA binding site when acetyl-CoA is absent, suggesting a potential coordination between biotin binding and acetyl-CoA binding. These findings provide insights into the structural dynamics and regulatory mechanisms of human ACCs.

Artificial photosynthetic system for diluted CO2 reduction in gas-solid phase

Rational design of robust photocatalytic systems to direct capture and in-situ convert diluted CO2 from flue gas is a promising but challenging way to achieve carbon neutrality. Here, we report a new type of host-guest photocatalysts by integrating CO2-enriching ionic liquids and photoactive metal-organic frameworks PCN-250-Fe2M (M = Fe, Co, Ni, Zn, Mn) for artificial photosynthetic diluted CO2 reduction in gas-solid phase. As a result, [Emim]BF4(39.3 wt%)@PCN-250-Fe2Co exhibits a record high CO2-to-CO reduction rate of 313.34 μmol g−1 h−1 under pure CO2 atmosphere and 153.42 μmol g−1 h−1 under diluted CO2 (15%) with about 100% selectivity. In scaled-up experiments with 1.0 g catalyst and natural sunlight irradiation, the concentration of pure and diluted CO2 (15%) could be significantly decreased to below 85% and 10%, respectively, indicating its industrial application potential. Further experiments and theoretical calculations reveal that ionic liquids not only benefit CO2 enrichment, but also form synergistic effect with Co2+ sites in PCN-250-Fe2Co, resulting in a significant reduction in Gibbs energy barrier during the rate-determining step of CO2-to-CO conversion.

Reduction of carbon dioxide to methane and ethanol on the surface of graphyne-like boron nitride (BNyen) monolayer: A DFT study

Recently, scientists have created a novel type of boron nitride material known as BNyen. This material is similar in structure to Graphyne and has a higher N:B ratio than traditional boron nitride due to the addition of boron and nitrogen connecting segments within its units. This material has been studied for its potential as a photocatalyst for reduction of CO2 using DFT approaches. Optical and electronic attributes of BNyen suggest that it has a wider visible-light range and a band gap of 5.69 eV. By adding boron to BNyen, patial distributions of LUMO and HOMO indicate that π network has been extended, resulting in significantly greater photocatalytic efficiency. Upon the adsorption of CO2 on BNyen monolayer, the band gap significantly decreases, indicating a strong interaction between the BNyen and CO2. DFT computations were employed to explore the mechanism of CO2 reduction to a single carbon product catalyzed by BNyen. Based on the ΔG values, the optimized pathway for this reduction is from CO2 to CH4. Additionally, the potential formation of di-carbon products was considered, and based on the free energy values, CH3CH2OH is identified as the final di-carbon product. The Gibbs free energies for potential CO2 reaction pathways on BNyen were calculated, revealing that CO2 can be reduced to CH4 with a low limiting potential of −0.37 V and to CH3CH2OH with a low limiting potential of −0.57 V, both processes being powered by solar energy. In CO2RR, the competing hydrogen evolution reaction (HER) must be considered. The free energy of HER (ΔG = 0.96 eV) is significantly higher than the ΔG of the rate-determining steps for the mono-carbon product (0.37 eV) and the di-carbon product (0.57 eV) on BNyen. Therefore, BNyen effectively suppresses HER during the CO2RR process. This research can serve as a valuable guide for developing novel types of BNyen as appropriate photocatalysts for CO2 reduction reactions (CO2RR).

Catalytic Impedance Spectroscopy: Concept and Application on CO2 Methanation.

Complex modeling of periodic excitation combined with time-resolved product detection is used to describe the complex response function of a catalytic system. We describe this concept of catalytic impedance spectroscopy (CIS) and the underlying general experimental approach and a concrete setup. The feasibility of CIS is experimentally demonstrated along the catalytic CO2 methanation reaction. The measurements confirm the theoretically anticipated rate-determining step of HCO* → CH* on Ni catalysts. Limitations and prospects of CIS to unravel reaction mechanisms are discussed.

An Expanded Substrate Spectrum of Sulfide:Quinone Oxidoreductase Found in Pollutant-Degrading Bacteria.

Sulfide:quinone oxidoreductase (Sqr) catalyzes the initial procedure on sulfide transformation, alongside sulfide (H2S, S2-) oxidization coupled with coenzyme Q (CoQ) reducing and reactive sulfur species (RSS) production. Here, we assessed the reactivity of propanethiol (PT) as an alternative substrate for Sqr to maintain intracellular homeostasis in strain S-1 capable of degrading emerging sulfur-containing pollutants. We deleted a gene encoding Sqr, and serial transcriptional difference induced by RSS dynamics was therefore revealed. Next, the reaction properties of two Sqr homologs from strains JMP134 and S-1 were comparatively characterized, respectively. As a result, an additional role of Sqr in yielding RSS from PT was found in reaction mixture prepared by cell-free extracts or purified enzymes. Interestingly, the transformation velocity of PT by Sqr was slower than that of sulfides. From this scenario, it was a rate-determining step that PT as a nucleophilic compound can be added into Sqr cysteine to form disulfide bond and likely serve nonoptimal sulfur recipient. In addition, the role of persulfidation driven by RSS in combating oxidative and sulfur stresses required to be further clarified. Nevertheless, this promiscuity of Sqr-binding organosulfur compounds and its catalytic modulation underscored that expanded substrates might benefit sulfide homeostasis in thiol-degrading bacteria.

Revealing OH species in situ generated on low-valence Cu sites for selective carbonyl oxidation

Catalytic oxidation through the transfer of lattice oxygen from metal oxides to reactants, namely the Mars-van Krevelen mechanism, has been widely reported. In this study, we evidence the overlooked oxidation route that features the in situ formation of surface OH species on Cu catalysts and its selective addition to the reactant carbonyl group. We observed that glucose oxidation to gluconic acid in air (21% O2) was favored on low-valence Cu sites according to X-ray spectroscopic analyses. Molecular O2 was activated in situ on Cu0/Cu+ forming localized, adsorbed hydroxyl radicals (*OH) which played the primary reactive oxygen species as confirmed by the kinetic isotope effect (KIE) study in D2O and in situ Raman experiments. Combined with DFT calculations, we proposed a mechanism of O2-to-*OH activation through the *OOH intermediate. The localized *OH exhibited higher selectivity toward glucose oxidation at C1HO to form gluconic acid (up to 91% selectivity), in comparison with free radicals in bulk environment that emerged from thermal, noncatalytic hydrogen peroxide decomposition (40% selectivity). The KIE measurements revealed a lower glucose oxidation rate in D2O than in H2O, highlighting the role of water (H2O/D2O) or its derivatives (e.g., *OH/*OD) in the rate-determining step. After proving the C1-H activation step kinetically irrelevant, we proposed the oxidation mechanism that was characterized by the rate-limiting addition of *OH to C1=O in glucose. Our findings advocate that by maneuvering the coverage and activity of surface *OH, high-performance oxidation of carbonyl compounds beyond biomass molecules can be achieved in water and air using nonprecious metal catalysts.

Mesoporous Fe3O4@SiO2@La nanocomposite for efficient methylene blue removal from wastewater

This study investigates the synthesis and application of Fe3O4@SiO2@La mesoporous nanocomposites for methylene blue (MB) removal from wastewater. The successful synthesis of the nanocomposite was confirmed by various characterization techniques including FE-SEM, XRD, BET/BJH, and FT-IR. The adsorption efficiency of the nanocomposite for MB removal was evaluated under different operating conditions, including initial solution pH, adsorbent dosage, contact time, and temperature. The results revealed that the nanocomposite demonstrated optimal performance at neutral pH (pH=7), with an adsorbent dosage of 0.01 g, a contact time of 5 min, and 25 °C. Kinetic studies revealed pseudo-second-order kinetics, indicating chemisorption as the rate-limiting step. Langmuir and Freundlich isotherms were applied to describe the adsorption process. The nanocomposites demonstrated excellent reusability and high removal efficiency in real wastewater samples. The enhanced MB removal efficiency of the Fe₃O₄@SiO₂@La nanocomposites is attributed to electrostatic interactions, π-π stacking, and hydrogen bonding between MB and the adsorbent surface. Overall, the synthesized nanocomposites offer a promising and efficient solution for MB removal from wastewater, demonstrating potential for practical applications in environmental remediation.

Electrospun fiber patches for inflammatory skin diseases – Correlating in vitro drug release with ex vivo permeation

In this proof-of-concept study, we aimed to develop an anti-inflammatory patch that in contrast to the semi-solid standard therapy is dry and non-greasy, and only needs to be changed once a day due to continuous release of the active ingredient over 24 h. While fiber materials for the treatment of inflammatory skin diseases have been reported in the literature, the majority of studies focuses solely on material characterization including in vitro release studies; however, there is a lack of ex vivo permeation studies as well as comparison with standard therapy. However, such experiments are crucial to deduct the potential efficacy of the drug delivery system, as skin absorption of the drug may be the rate-limiting step and not the drug release. Therefore, we set out to investigate different types of electrospun fiber systems based on polycaprolactone, a polymer with a well-established safety profile widely used for fabricating electrospun patches. The electrospun fiber patches were loaded with the anti-inflammatory drug hydrocortisone and characterized not only for their drug release properties, but for the first time also for their skin permeation and retention as well as their cytocompatibility and anti-inflammatory properties on human skin. While in the release studies, the layer-by-layer fiber system proved to be best suited for an application time of 24 h, this was not reflected in the permeation studies, where all fiber systems showed a similar skin permeation and retention of the drug. In our study set-up, a comparison with standard cream formulations revealed that electrospun fibers offer an advantage in terms of the permeated amount of hydrocortisone. Overall, this study supports the importance of conducting comparisons with standard therapies and, additionally, confirms that electrospun fibers are a promising dosage form for the controlled release of anti-inflammatory drugs for the treatment of inflammatory skin diseases.

Incorporation of TC4 (Ti-6Al-4V) to construct strong interfacial bonding with Mg matrix to achieve improved hydrogen storage kinetics

Effective contact between the catalyst and the Mg/MgH2 matrix is the key to efficiently enhancing the hydrogen storage kinetics. In this work, a Mg-10 wt% TC4 (Ti-6Al-4V) composite with strong interfacial bonding was prepared by vacuum hot pressing sintering, and the reinforcement mechanism of TC4 was investigated. The results indicated that TC4 has a significant improvement effect on the activation efficiency and hydrogen absorption/desorption kinetics. The hydrogen absorption and desorption activation energies of AZ91-TC4 (53.0/111.3 kJ/mol) are 19.6 and 37.2 kJ/mol lower than that of AZ91 without TC4, respectively. Moreover, TC4 can cause AZ91 to start dehydrogenation at 449 K, and the reduction is about 110 K. Except for the increase of grain boundaries and microcracks caused by TC4, the transition diffusion interface formed by TC4 and Mg matrix with a lower diffusion barrier can be used as a special fast diffusion channel to accelerate the hydrogenation process controlled by H atom diffusion. Meanwhile, the kinetic calculations indicate that the dehydrogenation process of AZ91 is controlled by the nucleation and growth step of Mg, and its nucleation activation energy is ca. 4 times the growth activation energy. TC4 and its induced precipitation of TiAl and Al8Mn5 can dramatically accelerate the nucleation process of Mg, resulting in the rate-determining step changing to the surface penetration of H atoms, and the desorption rate is significantly improved. These positive findings provide new tactics for designing excellent hydrogen storage catalysts.

Deciphering the Two-Step Hydride Mechanism of Monoamine Oxidase Flavoenzymes.

The complete two-step hydride transfer mechanism of amine oxidation involved in the metabolism of monoamine neurotransmitters was scrutinized by DFT calculations. In living organisms, this process is catalyzed by monoamine oxidase enzymes. Herein, we focus on some intriguing aspects of the reaction that may have been previously noticed but have not been clarified to date. The first step of the reaction includes the C-H bond cleavage on the methylene group vicinal to the amino group of the monoamine substrate and the subsequent transfer of hydrogen to the N5 atom of the flavin prosthetic group of the enzyme. We confirmed the nature of this step to be hydride transfer by evaluation of the pertinent HOMO-LUMO gap together with analysis of orbital contours alongside the intrinsic reaction coordinate profile. Next, we investigated the rather peculiar intermediate adduct that may form between the amine substrate and the flavin molecule, featuring an unusually long C-N bond of ∼1.62 Å. Although this bond is quite stable in the gas phase, the presence of just a few explicit water molecules facilitates its dissociation almost without energy input so that the amine-flavin intermediate can form an ionic pair instead. We attribute the existence of the unusual C-N bond to a fragile balance between opposing electronic structure effects, as evaluated by the natural bond orbital analysis. In line with this, the intermediate in the solution or in the enzyme active site can exist in two energetically almost equivalent forms, namely, as a covalently bound complex or as an ion pair, as suggested by previous studies. Finally, we characterized the transformation of the intermediate to the fully reduced flavin and imine products via proton transfer from the amino group to the flavin N1 atom, completing the reductive part of the catalytic cycle. Although we found that explicit solvation substantially boosts the kinetics of this step, the corresponding barrier is significantly lower than that in the hydride transfer step, confirming hydrogen abstraction as the rate-limiting step of amine oxidation and validating the two-step hydride transfer mechanism of monoamine oxidases.

Enhanced syngas production through dry reforming of methane with Ni/CeZrO2 catalyst: Kinetic parameter investigation and CO2-rich feed simulation

Natuna's natural gas reserve, which contains 70 %–v CO2 and 30 %–v CH4, opens a prospective method for producing syngas through the dry reforming of methane (DRM). This study used the equation and determination of kinetic parameters in a fixed-bed reactor to develop the operating conditions for the DRM process. The catalyst used was 10 %Ni/CeZrO2 and followed the Langmuir-Hinshelwood mechanism, with CH4 dissociation (activation of C–H bonds) on the Ni catalyst as the rate-determining step. According to the results, the simulation and experimental data have error values of ≤ 5 % and RMSE < 0.046. This indicates that the equation and kinetic parameters used in the simulation are valid for reactor modeling. Steady-state modeling was then conducted using a 1D quasihomogeneous model. The feed composition of CO2:CH4 = 70:30 (Natuna gas field composition) has optimized results with temperature 700 °C, CH4 conversion at 92 %, CO2 conversion at 28 %, and H2/CO ratio 1.42, and carbon formation at 7.1 mgC/gcat. This study also found that a higher CO2:CH4 feed ratio could reduce carbon formation during DRM.

Thaumarchaeota from deep-sea methane seeps provide novel insights into their evolutionary history and ecological implications

BackgroundAmmonia-oxidizing archaea (AOA) of the phylum Thaumarchaeota mediate the rate-limiting step of nitrification and remove the ammonia that inhibits the aerobic metabolism of methanotrophs. However, the AOA that inhabit deep-sea methane-seep surface sediments (DMS) are rarely studied. Here, we used global DMS metagenomics and metagenome-assembled genomes (MAGs) to investigate the metabolic activity, evolutionary history, and ecological contributions of AOA. Expression of AOA-specific ammonia-oxidizing gene (amoA) was examined in the sediments collected from the South China Sea (SCS) to identify their active ammonia metabolism in the DMS.ResultsOur analysis indicated that AOA contribute > 75% to the composition of ammonia-utilization genes within the surface layers (above 30 cm) of global DMS. The AOA-specific ammonia-oxidizing gene was actively expressed in the DMS collected from the SCS. Phylogenomic analysis of medium-/high-quality MAGs from 18 DMS-AOA indicated that they evolved from ancestors in the barren deep-sea sediment and then expanded from the DMS to shallow water forming an amoA-NP-gamma clade-affiliated lineage. Molecular dating suggests that the DMS-AOA origination coincided with the Neoproterozoic oxidation event (NOE), which occurred ~ 800 million years ago (mya), and their expansion to shallow water coincided with the Sturtian glaciation (~ 713 mya). Comparative genomic analysis suggests that DMS-AOA exhibit higher requirement of carbon source for protein synthesis with enhanced genomic capability for osmotic regulation, motility, chemotaxis, and utilization of exogenous organic compounds, suggesting it could be more heterotrophic compared with other lineages.ConclusionOur findings provide new insights into the evolutionary history of AOA within the Thaumarchaeota, highlighting their critical roles in nitrogen cycling in the global DMS ecosystems.EWMb7UH3jhRcWd8tHNUGyqVideo

Poly(A)-Specific Ribonuclease Deficiency Leads to Deregulated Expression of Genes Involved in Sex Determination and Gonadal Maturation in Zebrafish

Abstract Background Deadenylation, the process of removal of poly (A) tail of messenger ribonucleic acids (mRNAs), is a rate-limiting step in mRNA stability, and poly(A)-specific ribonuclease (PARN) is the most important exonuclease involved in this process. Besides mRNA stability, PARN is also involved in several other processes including telomere maintenance, noncoding RNA maturation, ribosome biogenesis, and TP53 function. Previously, we have shown that zebrafish PARN null mutants are viable and fertile but turn out to only develop into males, indicating a role in oogenesis. The present study was focused on analyzing the expression of genes involved in sex determination and gonadal development in PARN mutant zebrafish. Materials and Methods Total RNA was extracted and quantitative real-time polymerase chain reaction was performed to determine the expression level of genes involved in gonad development in PARN mutant embryos (4 days postfertilization [dpf]) and adults (120 dpf) in comparison to their wild-type siblings. The expression levels were estimated by the ΔΔCT relative quantification method. Results At 4 dpf, the expression of germ cell-specific genes did not show any significant difference in the null mutants compared to the heterozygous and their wild-type siblings, suggesting no effect on germ cell differentiation due to the loss of PARN. However, the majority of the ovary-associated genes analyzed showed an increased expression in PARN null and heterozygous mutants compared to the wild-type siblings. Intriguingly, the expression of testis-associated genes showed decreased expression in the mutants compared to their wild-type siblings at 4 dpf. In adult stages, as expected, the expression of genes that jointly regulate the proper formation and function of ovaries and testes showed decreased expression in PARN null mutants. Interestingly, the expression of genes involved in the differentiation of testes, despite showing a decreased expression in the mutants, was comparable between the null and heterozygous mutants. Conclusion Taken together, these results suggest that the loss of PARN does not affect germ cell differentiation but affects the sexual differentiation that happens at later stages of development, particularly the process of oogenesis, in zebrafish.

Two-Step Noncatalyzed Hydrolysis Mechanism of Imines at the Air-Water Interface.

The hydrolysis of imines has long been assumed to be their main atmospheric fate, based on early studies in the field of organic chemistry. However, the hydrolysis mechanism and kinetics of atmospheric imines remain unclear. Here, an advanced Born-Oppenheimer molecular dynamics method was employed to investigate the noncatalyzed hydrolysis mechanism and kinetics at the air-water interface by selecting CH2NH as a model molecule. The results indicate that CH2NH exhibits a pronounced surface preference. The noncatalyzed hydrolysis of CH2NH follows a unique two-step reaction mechanism involving first proton transfer and then OH- transfer through the water bridge at the air-water interface, in contrast to the traditional one-step mechanism. The calculated reaction rate for the rate-determining step is 3.32 × 105 s-1, which is 2 orders of magnitude greater than that of the bulk phase. In addition, the involvement of the interfacial electric field further enhances the reaction rate by approximately 3 orders of magnitude. The noncatalyzed hydrolysis rate at both the air-water interface and the bulk phase is higher than that of the possible acid-catalyzed one, clarifying noncatalyzed hydrolysis as the dominant mechanism for CH2NH. This study elucidates that the noncatalyzed hydrolysis of atmospheric imines is feasible at the air-water interface and that the revealed unique two-step hydrolysis mechanism has significant implications in atmospheric and water environmental chemistry.

Leveraging Soft Acid-Base Interactions Alters the Pathway for Electrochemical Nitrogen Oxidation to Nitrate with High Faradaic Efficiency.

Electrocatalytic nitrogen oxidation reaction (N2OR) offers a sustainable alternative to the conventional methods such as the Haber-Bosch and Ostwald oxidation processes for converting nitrogen (N2) into high-value-added nitrate (NO3 -) under mild conditions. However, the concurrent oxygen evolution reaction (OER) and inefficient N2 absorption/activation led to slow N2OR kinetics, resulting in low Faradaic efficiencies and NO3 - yield rates. This study explored oxygen-vacancy induced tin oxide (SnO2-Ov) as an efficient N2OR electrocatalyst, achieving an impressive Faradaic efficiency (FE) of 54.2% and a notable NO3 - yield rate (22.05µg h-1 mgcat -1) at 1.7V versus reversible hydrogen electrode (RHE) in 0.1m Na2SO4. Experimental results indicate that SnO2-Ov possesses substantially more oxygen vacancies than SnO2, correlating with enhanced N2OR performance. Computational findings suggest that the superior performance of SnO2-Ov at a relatively low overpotential is due to reduced thermodynamic barrier for the oxidation of *N2 to *N2OH during the rate-determining step, making this step energetically favorable than the oxygen adsorption step for OER. This work demonstrates the feasibility of ambient nitrate synthesis on the soft acidic Sn active site and introduces a new approach for rational catalyst design.