A method for controlled sonication of isolated rat peritoneal mast cells and separation of the membrane-bound secretory granules on a self-generating density gradient of Percoll (polyvinyl-pyrrolidone-coated silica gel particles) is described. Ruthenium red, which binds exclusively to the matrix of the membrane-free granules, proved to be an excellent agent for the quantitative assessment of the state of the perigranular membranes in the various preparations. The percentage of intact granules, as observed in the electron microscope, increased from 49% in the primary granule pellet to 75% after separation on Percoll gradient, whereas the corresponding figures as revealed by the ruthenium red method were 69 and 93% respectively. The observed discrepancies were due to difficulties involved in sampling the granule pellets for electron microscopy.