Rare Species Research Articles

Negative density dependence promotes persistence of a globally rare yet locally abundant plant species Oenothera coloradensis

Identifying the mechanisms underlying the persistence of rare species has long been a motivating question for ecologists. Classical theory implies that community dynamics should be driven by common species, and that natural selection should not allow small populations of rare species to persist. Yet, a majority of the species found on Earth are rare. Consequently, several mechanisms have been proposed to explain their persistence, including negative density dependence, demographic compensation, vital rate buffering, asynchronous responses of subpopulations to environmental heterogeneity, and fine‐scale source‐sink dynamics. Persistence of seeds in a seed bank, which is often ignored in models of population dynamics, can also buffer small populations against collapse. We used integral projection models (IPMs) to examine the population dynamics of Oenothera coloradensis, a rare, monocarpic perennial forb, and determine whether any of five proposed demographic mechanisms for rare species persistence contribute to the long‐term viability of two populations. We also evaluate how including a discrete seed bank stage changes these population models. Including a seed bank stage in population models had a significantly increased modeled O. coloradensis population growth rate. Using this structured population model, we found that negative density‐dependence was the only supported mechanism for the persistence of this rare species. We propose that high micro‐site abundances within a spatially heterogeneous environment enables this species to persist, allowing it to sidestep the demographic and genetic challenges of small population size that rare species typically face. The five mechanisms of persistence explored in our study have been demonstrated as effective strategies in other species, and the fact that only one of them had strong support here supports the idea that globally rare species can employ distinct persistence strategies. This reinforces the need for customized management and conservation strategies that mirror the diversity of mechanisms that allow rare species persistence.

First documentation of a clinical multidrug-resistant Enterobacter chuandaensis ST2493 isolate co-harboring blaNDM-1 and two blaKPC-2 bearing plasmids.

The increasing prevalence of carbapenem-resistant Enterobacter cloacae complex (CREC) poses great challenges to infection treatment in the clinical setting. In this study, we reported the emergence of carbapenemase in a rare species, Enterobacter chuandaensis, belonging to the Enterobacter cloacae complex (ECC). We elucidated the genetic characteristics of carbapenem-resistant isolate FAHZZU5885, co-harboring blaNDM-1 and blaKPC-2. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and average nucleotide identity (ANI) analysis were used to identify E. chuandaensis. S1 nuclease pulsed-field gel electrophoresis (S1-PFGE) and Southern blotting were used to clarify the number and size of the plasmids in FAHZZU5885. Antimicrobial phenotypes were identified by antimicrobial susceptibility testing (AST), and the characteristics of the strain were examined with whole-genome sequencing (WGS). The conjugation experiment and stability assay were conducted to verify the transferability and stability of the plasmid carrying carbapenemase-encoding genes. E. chuandaensis FAHZZU5885 was isolated from a perianal swab of a patient admitted to the ICU. This strain simultaneously carried blaNDM-1 and two blaKPC-2 genes. FAHZZU5885 was resistant to most of the tested antibiotics except for amikacin, tigecycline, and colistin. Two blaKPC-2 were located separately on two different plasmids, the ~ 120kb IncFIA-IncFII plasmid and the ~ 80kb IncR plasmid. Both plasmids shared the conserved sequence klcA-korC-ISkpn6-blaKPC-2-ISkpn27-tnpR-tnpA. The blaNDM-1-bearing plasmid had the potential to transfer and can remain stable after successive passages. In addition, the blaNDM-1 was carried on a ~ 80kb IncFII plasmid with the conserved sequence ISAba125-blaNDM-1-ble-trpF-dsbD-cutA-groS-groL. In summary, this study marks the first report of the multidrug-resistant E. chuandaensis strain FAHZZU5885 harboring two blaKPC-2-bearing plasmids, indicating the potential for the further dissemination of carbapenemase-encoding genes in novel species. The findings contribute to enhancing our understanding of CREC strains, emphasizing the need for continued and comprehensive surveillance of this species.

Inventory, new records, and host association of cleptoparasitic bees (Apidae: Nomadinae) in Brazilian savanna region

ABSTRACT Brazil has a rich diversity of native bees, crucial as pollinators. This study aimed to inventory cleptoparasitic bees in the Cerrado region of Mato Grosso, specifically in three preserved areas, characterized by Cerrado vegetation. Species richness and distribution over time were evaluated, and new occurrences are reported for the study area. Biweekly sampling was used to collect specimens and monitor the nesting behaviour of bees (Apoidea). A total of 24 individuals from the subfamily Nomadinae, covering five genera and six species, were collected. Results showed new occurrences, including Acanthopus palmatus (Ericrocidini), Odyneropsis armata (Epeolini), and Rhathymus unicolour (Rhatimini). Seasonal variation was observed mainly at the beginning and end of the rainy season. For the first time, the interaction between the parasite and host species Mesoplia decorata and Epicharis maculata was reported. We conclude that long-term inventories are essential to reveal rare species and describe new associations in understudied areas.

Pollen Interference Between Rare and Common Species.

The mechanisms underlying plant species distribution and abundance have been long studied in ecology. However, the role of heterospecific pollen interference in shaping these patterns needs more attention. Species distribution and abundance are important factors determining whether a species is endangered or not; thus, understanding the impact of heterospecific pollen interference on rare species could help to inform conservation strategies aimed at preserving plant communities. In this study, we conducted a multispecies experiment using eight co-occurring and co-flowering plant species with varying rarity levels in Switzerland. We performed cross-pollinations by hand between nearly all species pairs and measured seed set (whether a flower produces seed) and seed number (number of seeds per flower) as outcomes. We looked at the effects of rarity status, self-compatibility, and recipient-donor relatedness on heterospecific pollen interference. Contrary to expectations, neither seed set nor seed number were affected by heterospecific pollen deposition. Self-compatible species had a higher seed set probability, but this was independent from species rarity. In our study setting, heterospecific pollen interference seems to have only minor effects on seed set and seed number, and consequently on recruitment. Thus, heterospecific pollen interference seems to play only a minor role in shaping plant species distribution and abundance. Nevertheless, the higher impact of heterospecific pollen deposition on rare and closely related species, as well as the importance of conspecific pollen loss, might need further investigation for both insitu and ex-situ conservation strategies.

Spatio-temporal analysis of habitat suitability for the endangered oriental white stork (Ciconia boyciana) in the wetland ecosystem of northeast China

Human-induced habitat transformation often leads to habitat degradation and loss, impacting suitable habitats for endangered and rare species. This study was conducted to assess suitable habitats for the endangered oriental white stork in the wetland ecosystem of northeast China, to facilitate successful species-habitat conservation. The study incorporated field surveys, literature reviews, vegetation index calculations, eDNA for assessing prey abundance and land use and land cover classification for the years 2000, 2011, and 2022. A fuzzy logic-based habitat model was developed to map suitable habitats for the oriental stork. Generalized Linear Models (GLM) and Principal Component Analysis (PCA) were used to assess the influence of various environmental variables on habitat suitability changes. Roosting locations of the oriental stork were used as reference points to evaluate the impact of environmental factors on habitat suitability. The results indicate that 20% of the area is highly suitable for the stork, 73.4% is moderately suitable, and 5.6% is less or not suitable. Habitats near lakes and rivers, with low Normalized Difference Vegetation Index (NDVI) and high Normalized Difference Water Index (NDWI), are more suitable compared to areas close to roads and built-up zones. Prey abundance, particularly fish, is a crucial determinant of oriental stork presence and survival. Marshlands, swamps, and water bodies were identified as the most suitable habitats, as they interface with lotic and lentic ecosystems providing abundant prey for the storks. Our findings emphasize the importance of ongoing efforts to protect wetland ecosystems and habitats for endangered and rare bird species. Priority should be given to habitats identified as critical roosting areas for the oriental stork.

Features of the oropharyngeal microbiota of healthy children and those with acute respiratory infections. A prospective single-center randomized study

Background. The oropharyngeal microbiota is involved in the development of colonization resistance, affecting viral adhesion and metabolism. Any deviations in the stability of the environmental microbial niches of the oropharynx alter the local immune response and can trigger severe chronic somatic disorders. Aim. To compare the composition of the microbiota of children during an episode of respiratory infection and healthy volunteers examined in different periods of convalescence. The obtained data can be used to predict the course of the disease, analyze the risk of complications, and assess the frequency of the diseases in the future. Materials and methods. From 20.01.2022 to 23.12.2022, an open-label prospective single-center randomized comparative study was conducted, which included 120 children aged 5-10 who presented with symptoms of acute respiratory infection. The control group consisted of 15 asymptomatic children examined at different periods of convalescence. The study compared changes in the oral microbiota composition of patients and healthy children. The evaluation was performed using complete 16S rRNA gene sequencing on the Oxford Nanopore platform. Taxonometric analysis at the species and genera level was performed using the Knomics-Biota platform. The R programming language was used for statistical processing. In addition, the parameters of α- and β-diversity of the microbiota were assessed. The Chao1 and Shannon indices were calculated to assess α-diversity (diversity within one community). The Chao1 index is based on the number of species found in the sample and also rare species that are found only 1 or 2 times, thus preventing underestimation of diversity. The Shannon index includes both the number of species and their uniformity in the community. A change in the index indicates the dominance of one or more species. The following indicators were used to assess the β-diversity describing the differences between two microbiota samples at the species and genera level: Bray–Curtis dissimilarity (characterizing the ratios of common and different microorganisms between the samples) and the Aitchison distance (reflecting the differences in the proportions of microorganisms). In addition, the balance between the two groups of microorganisms was evaluated using the NearesBalance method, which characterizes the differences between the microbiota of the main and control groups. Results. The results of our study show that during respiratory infection, the state of the oropharyngeal microbiota is characterized by an increase in α-diversity, which is associated with an increase in the proportion of species of Streptococcus salivarius, Streptococcus pneumoniae, Streptococcus pseudopneumoniae, Streptococcus pyogenes, Streptococcus thermophilus and A12 versus the proportion of Streptococcus mitis, Streptococcus oralis, Streptococcus gwangjuense, Streptococcus sanguinis, Streptococcus gordonii and FDAARGOS_192. In the control group, the oropharyngeal microbiota was divided into two clusters. The dominance of streptococci was observed in the first group (control), while the second group had a more uniform representation. Analysis of the changes in microbial communities in the main and control groups can show the stages of oral microbiota recovery after an acute respiratory infection episode. Conclusion. More research is needed in the field of the oropharyngeal microbiome on a larger sample of healthy children, to standardize the communities of the oropharyngeal microbiota, to study the interaction within communities and with the body as a whole. Analysis of the impact of the microbiota on the frequency and course of respiratory infections and the rate of complications opens up new prospects in treating, rehabilitating, and preventing diseases. These research areas can contribute to improving children's health and quality of life and introducing new approaches into clinical practice.

Unraveling Community Potential Interactions by Environmental DNA in the Hong Kong Coastal Waters

ABSTRACTTraditional approaches for studying potential interactions in marine ecosystems often struggle to fully capture all taxa in a community, especially rare species. This issue is particularly challenging in coastal waters with high biodiversity and spatiotemporal dynamics. In this study, we employed environmental DNA (eDNA) metabarcoding, utilizing multiple marker genes, to comprehensively investigate interspecific interactions across various domains in the subtropical coastal waters of Hong Kong. The southern and eastern regions of Hong Kong waters exhibit distinct environmental seasonality, and our investigation focused on comparing the potential interaction networks and the keystone taxa between these two regions. The putative species interaction networks across various groups (i.e., bacteria, protists, and metazoans) were revealed by using weighted correlation network analysis (WGCNA). Our results showed that primary consumers, mainly dinoflagellates and ciliates, were the dominant actors within the interaction networks, although their distributions varied between the two regions. Bacterial taxa from the Pseudomonadota groups primarily constituted saprobes in the southern region, while exhibiting an even distribution in the eastern region. The interaction network in the southern region was larger but less stable compared to the eastern region. This could be attributed to the stronger responses of keystone taxa to environmental variations and the relatively higher number of connectors (e.g., Akashiwo and Protoperidinium within Dinophyceae) in the eastern region. Our findings highlight the versatility of eDNA metabarcoding for studying potential species interactions, providing critical insights into ecosystem structure and stability, and offering suggestions for marine biodiversity conservation.

Assessment of Changes in the Composition and Distribution of Large and Medium-Sized Mammals in Xishuangbanna, Southwest China.

Given the vulnerability of large and medium-sized mammal communities to climate change and human disturbances, understanding the spatial-temporal dynamics of these communities is essential for effective conservation planning. However, in many biodiversity hotspots, precise biological community assessments are insufficient. From 2012 to 2022, we deployed 784 camera traps in eight nature reserves (including sub-reserves) and one State Forest Farm (SFF, less strictly protected than a reserve) to study the composition and distribution of large and medium-sized mammals in tropical Xishuangbanna. The findings revealed the following: (1) Forty-three species, encompassing six orders, 17 families, and 37 genera, were documented. Among the species in historical data, nine species were not detected in this survey. (2) Smaller and more fragmented reserves lacked larger body-sized predators and herbivores, and most common species showed lower relative population abundance. Conversely, the SFF exhibited high mammal diversity. (3) The community composition of large and medium-sized mammals varied significantly across the nine sites, particularly among threatened species. Our findings highlight the uneven distribution of these mammal communities in Xishuangbanna, with rare and large-sized species facing increased vulnerability to rapid environmental changes. Moreover, the findings demonstrate the importance of considering species specificity and uniqueness in conservation planning for maintaining regional-scale biodiversity.

Playback-Aided Surveys and Acoustic Monitoring in the Detection of the Endangered Forest Owlet Athene blewitti.

Monitoring rare and endangered species over the long term is challenging due to limited historical data and comparable methods. Climate and landscape changes can significantly impact species distributions, driving some to extinction. The Forest Owlet is an endangered bird considered extinct but rediscovered after 113 years in 1997. Since its rediscovery, followed by the description of its calls, there have been regular recent sightings of the species from newer locations, leading to its downlisting in the IUCN Red List from critically endangered to endangered. In the Dang region in Gujarat, India, there have been no historical records despite previous systematic ornithological studies over three decades, but have multiple sightings over the last few years. Although we now know a little more about the broad association of the species occurrence with habitat and climate variables, a major focus of this study is to estimate the reasons for the "appearance" of the Forest Owlet in Dangs. We revisited locations of past surveys to determine if the species is currently found in the study sites where it was previously unrecorded. We also examine whether new survey methods using playback of its call could enhance its detection. During resurveys, we located the Forest Owlet at new, previously unrecorded locations. Analyses of satellite imagery products revealed significant changes in the broader Dang landscape, including the loss of native forests, increased agriculture, and shifts in mean maximum temperature and rainfall. Our research suggests playback can enhance detection, although its effectiveness varies across landscapes. A detection strategy for long-term monitoring was developed using different acoustic detectors. An effective detection distance of 300 m within the habitat was achieved using automated recording units (ARUs). Although the species responds to climate and habitat change, the cause of the increased reports of this endangered species remains undetermined. However, we found increased detections using newer survey techniques involving bioacoustics. We recommend using these techniques carefully for future baseline studies, which are urgently required.

Cliffs support lichen communities unique from nearby forests

Cliffs support rare, endemic, and glacial relict vegetation that may differ from vegetation in surrounding forests. Yet, cliffs are difficult to sample, and rock-dwelling lichens can be challenging to identify; therefore, cliff lichens are often excluded from biodiversity studies. This omission creates fundamental gaps in our understanding of cliff lichens that lead to underestimation of overall community diversity. This study addresses one such gap by asking a basic question: do lichen communities on cliffs differ from rock-dwelling lichen communities in forests? To answer this question, we compared lichen communities from three cliffs in the Linville Gorge (North Carolina, USA; 369 m2 of cliff face surveyed) to rock and soil-dwelling lichen communities in forested plots across the same region (Southern Appalachian Mountains, USA, Alabama to North Carolina; 198 1-hectare forested plots). Forest plots were further divided into three groups based on elevation, proximity to Linville Gorge cliffs, and location within the state of North Carolina. A total of 225 rock or soil-dwelling lichen species were found in forest plots throughout the study area, while 104 species were found on cliffs. Two rare cliff-specialist species, Canoparmelia alabamensis, and Chrysothrix susquehannensis, were locally abundant on the studied cliffs but absent from surrounding forests. Our results show that cliffs support 20% of regional rock-dwelling lichen diversity, and that these cliff communities are distinct from those in forests. The high diversity, occurrence of unique species, and presence of rare lichens on cliffs indicate that cliff lichens should be included in biodiversity inventories and stewardship plans. To support this inclusion, we provide the first checklist for the lichens of Linville Gorge. Checklists like this one, including both cliff and non-cliff lichens, provide data on regional diversity and rarity that inform lichen conservation and rock climbing management.

New records of rare herpetofauna species in Sinaloa, Mexico

New records of rare herpetofauna species in Sinaloa, Mexico

Unraveling the therapeutic potential of Astilbe rivularis Buch.-Ham. ex D. Don in attenuation of diabetic neuropathy in laboratory rats

Ethnopharmacological relevanceAstilbe rivularis Buch.-Ham. ex D. Don is a rare medicinal plant, traditionally employed for treating several disorders. The juice, decoction or powder of the roots, rhizomes, leaves and even the entire plant, are used for managing peptic ulcer, diarrhoea, jaundice, sprains and muscular swellings, bone fracture and dislocation of joints, postpartum bleeding and other menstrual disorders. These conventional medicinal uses make Astilbe rivularis a promising candidate for further research. Aim of the studyThis study was designed to explore the neuroprotective potential of hydroethanolic extract of Astilbe rivularis (ARHE) in diabetic neuropathy (DN) in rats. Materials and methodsGC-MS analysis was used to identify the phytoconstituents present in the plant extract. DN was induced by administration of STZ (55 mg/kg, i.p.), 15 min after NAD (230 mg/kg, i.p.) injection. The rats with fasting blood glucose (FBG) level >250 mg/dl were included in the study. DN was assessed by estimating the level of FBG, lipid profile, and invitro and invivo oxidative stress parameters. Additionally, behavioural parameters like, mechanical hyperalgesia, hot and cold allodynia were estimated to assess diabetic neuropathy. Furthermore, the level of antioxidant enzymes like SOD, GSH, and TBARS in sciatic nerve and inflammatory markers like, TGF-β and IL-6 were measured. ResultsAltogether, 30 phytoconstituents were identified including heptafluorobutyric acid, hexadecanoic acid, and beta-sitosterol depicting antioxidant, antidiabetic, and anticancer properties, respectively. Administration of different doses (100, 200, and 400 mg/kg) of ARHE to diabetic rats attenuated elevated blood glucose level and restored lipid profile, body weight, food and water intake, and antioxidant level. Moreover, elevated level of inflammatory markers like, TGF-β and IL-6 was also found to be attenuated in sciatic nerve. Furthermore, ARHE attenuated the pain response assessed by mechanical hyperalgesia and hot and cold allodynia in diabetic neuropathy rats. ARHE also showed inhibitory activity on ALR enzyme and erythrocyte sorbitol accumulation, and ameliorated oxidative stress. Histopathological study indicated improvement in the architecture of sciatic nerve tissue in diabetic neuropathy rats with the treatment of ARHE. ConclusionsConclusively, hydroethanolic extract of Astilbe rivularis exhibited neuroprotective potential and ameliorated diabetic neuropathy in rats.

Intersectional Hybrids of the Relict Species, Box Huckleberry (Gaylussacia brachycera), with Dwarf Huckleberry (Gaylussacia dumosa)

Gaylussacia brachycera (box huckleberry) is a unique relict species and is the monospecific member of Gaylussacia sect. Vitis-idaea. As part of investigations to understand interspecific crossability in Gaylussacia, pollinations were made between evergreen 2x G. brachycera and deciduous 2x G. dumosa (dwarf huckleberry). The primary pollinations succeeded at a low level and produced four viable hybrids. Three of these hybrids had box huckleberry as the female, and one of them, dwarf huckleberry, as the female. Morphologically, these hybrids were distinct from the parents and were generally intermediate. The fertility of the hybrids was low, but one hybrid flowered sufficiently to allow collection of pollen and to backcross it as a male to box huckleberry. Four BC1 hybrids were produced from this cross. The F1 and BC1 hybrids were all verified using simple sequence repeat markers developed for the closely related genus Vaccinium. These hybrids are notable for being the first recorded hybrids of this rare species, G. brachycera, with any other Gaylussacia species, and these hybrids are expected to lead to a better understanding of species relationships both within Gaylussacia and between Gaylussacia and Vaccinium.

The Recreational Value of Rare Species: Causal Evidence from the Cassia Crossbill

The Recreational Value of Rare Species: Causal Evidence from the Cassia Crossbill

Genetic Diversity and Structure of Physaria on the Kaibab Plateau: Implications for Conservation

ABSTRACTAssessing patterns of genetic diversity within and among closely related congeners is important for evaluating the conservation status of rare plant taxa. We used nuclear microsatellite genotyping to examine the genetic relatedness among three Physaria taxa on the Kaibab Plateau in northern Arizona. Over 100 species of Physaria are recognized, and are widely distributed in Western North America. On the Kaibab Plateau several taxa occur, including Physaria arizonica and two subspecies of P. kingii, P. kingii subsp. latifolia and P. kingii subsp. kaibabensis. The latter subspecies, the Kaibab bladderpod, is rare and endemic to the Kaibab Plateau and is a potential candidate to be listed under the Endangered Species Act. Morphological characters, primarily flower color, have been used to distinguish P. kingii subsp. kaibabensis from other subspecies. Here we aim to assess its genetic diversity and differentiation as compared to congeners on and around the Kaibab Plateau. We genotyped DNA obtained from leaf samples from 463 individuals collected from 26 sites representing the three putative taxa (12 P. kingii subsp. kaibabensis, 8 P. kingii subsp. latifolia, and 6 P. arizonica). Our results showed that all samples initially identified as P. kingii subsp. latifolia and P. kingii subsp. kaibabensis on the Kaibab Plateau form a single genetic cluster that is well‐differentiated from P. kingii subsp. latifolia sampled from sites off the plateau or P. arizonica on or off the plateau. For P. kingii on the plateau, our findings do not support the previous subspecies designations based on morphological characters. While additional studies of P. kingii will further resolve taxonomic uncertainties within this species, our findings indicate that the Kaibab Plateau population is genetically diverse and genetically distinct, and federal protection is justified in light of the threats faced on the Kaibab Plateau and its limited range.

Rediscovery of the neotrichous species Tauriobia insueta Livshitz and Mitrofanov (Acari: Trombidiformes: Tetranychidae)

The present study deals with the rediscovery of Tauriobia insueta Livshitz and Mitrofanov, 1967 a rare neotrichous spider mite species. It was originally described from pink rock-rose (Cistus creticus L., Cistaceae) in Ukraine. In the present work, the species is recorded for the first time from Greece and redescribed based on material collected from the same host plant. The immature stages are also described and the ontogenetic development of chaetotaxy is discussed. Additionally, a key to genera and subgenera of the tribe Hystrichonychini Pritchard and Baker, 1955 is provided.

Synergistic effects of microplastics and sulfonamide on greenhouse gas emissions in agricultural ditch sediments: Insights into microbial interactions

Recently, concerns have been raised regarding concurrent pollution by microplastics and antibiotics in agricultural aquatic ecosystems. However, knowledge gaps remain regarding their combined effects on greenhouse gas (GHG) emissions and bacterial community assembly mechanisms. To address this, a microcosm experiment was performed to investigate the GHG (CH4, CO2, and N2O) emission characteristics and bacterial community assembly mechanisms in agricultural ditch sediments under co-exposure to different microplastics (polythene (PE), polylactic acid (PLA)), and sulfanilamide (SA). The global warming potential (GWP) of the different treatments was ranked as follows: SA+PLA (162.96 mg/m2/h) > PLA (123.49 mg/m2/h) > SA (121.75 mg/m2/h) > SA+PE (102.33 mg/m2/h) > CK (without microplastics or antibiotics, 84.67 mg/m2/h) > PE (78.29 mg/m2/h). Additionally, a phylogenetic bin-based null model and molecular ecological network analysis indicated that SA-induced selective pressures reduced compositional turnover, whereas microplastics enhanced drift effects and decreased network robustness. The co-contamination of SA with different microplastics exhibited the opposite effect on the network and assembly process, suggesting that disturbance-mediated species dominance alters the colonization of rare species. Collectively, these findings provide valuable evidence that the synergistic effects of biodegradable microplastic and SA can promote GHG emissions and influence the mechanisms underlying community assembly processes.

The Effects of Cattle Grazing on the Composition of Diatom Assemblages in the Peatland Pools of the Southeastern Alps (Italy, Adamello-Brenta Nature Park)

Mires are significant C-sinks and important habitats for biodiversity conservation. Particularly in the Alpine peatlands, grazing and trampling cause mires to degrade, causing changes in plant communities that increase bulk density, peat erosion, and nutrient excesses. We took sixteen samples of epipelic and epiphytic diatoms from mire pools subjected to varying degrees of grazing in the Adamello-Brenta Nature Park (Trento, Italy). We identified >100 diatom species (ca. 70% included in Red List threat categories). We used nMDS to identify groups of diatom species. Their statistical significance was checked with an ANOSIM and, to identify the species that contributed most to the difference between the two groups, a BEST-SIMPER procedure was carried out. The multivariate analyses allowed us to identify significant differences among the most and least grazed sites, and to select the species that contributed most to this distinction. We confirmed that some species were more frequent and abundant in the most grazed sites and behaved as opportunists in the presence of a greater nutrient input, to the detriment of rare and sensitive species, which were more numerous and abundant in the less grazed sites. We provided useful information on grazing effects, underlining the importance of managing and protecting habitats of unique environmental value.

Molecular Diagnosis of Vaginal Microbiota Associated with Spontaneous Abortion in Women

Spontaneous abortion (SA) is a sever disease in which a women losses her foetus usually before 24 weeks of the pregnancy. About 10% -50% of pregnancy cases are run out with SA for reasons related with women's age and health. This condition occurrence may increases if the patient has a history of bacterial vaginosis. This study aimed at the characterization and isolation of vaginal microbiota generally and highlight on commensal bacteria becoming opportunistic when circumstances are favourable. From October to December 2022, about 100 samples were collected, 50 specimens from women with SA and 50 specimens from healthy pregnant outcomes (control). The high vaginal swabs samples were collected from Babylon Teaching Hospital for Maternity and Children and Imam Sadiq Teaching Hospital in Babylon, Iraq. To culture the samples, they were transported by media swab to laboratory. The culture of bacteria was done on 4 types of agar media: UTI chromogenic agar, MRS agar, MacConkey agar and blood agar. The first identification of bacteria was based on phenotypic traits of colonies, using manual biochemical tests and gram stain. Finally, the diagnosis was confirmed genetically by extracting bacterial genomic DNA for 20 of bacterial isolates under study and using PCR technique for 16S rRNA Loci gene and sequencing. The current study results showed difference in bacterial genera in women with SA compared with healthy women. It was also noted that embroilment of Enterococcus faecalis occurred in most cases of SA with an estimated percentage of 56% (28/50), thus defeating Escherichia coli by 32% (16/50) and 4% (2/50) for Klebsiella pneumonia and 4% (2/50) for Enterococcus gallinarum. In this study, some very rare bacteria species were identified including Acinetobacter junii at 2% (1/50) and Corynebacterium coyleae at 2% (1/50). While the percentage of bacteria associated with healthy women was: 30% (15/50) for E. faecalis, 26% (13/50) for E. coli, 18% (9/50) for K. pneumonia, 24% (12/50) for Staphylococcus epidermidis, and 2% (1/50) for Metabacillus niabensis (which was diagnosed for the first time in Iraq as well as the rest of the world in a clinical sample).

Conservation biology of three threatened Limonium species endemic to Zakynthos Island (Ionian Islands, Greece)

Abstract Knowledge of the life history traits, reproductive biology and demography of rare species is fundamental for their conservation, yet plant population monitoring is uncommon. The restricted ranges of the Limonium species endemic to the Mediterranean area, combined with the vulnerability of their specialized littoral habitats, indicate the need for appropriate conservation measures. We evaluate the conservation status and estimate the future extinction risk of three Limonium species endemic to Zakynthos Island in the Ionian Islands, Greece (Limonium korakonisicum, Limonium phitosianum and Limonium zacynthium) using 5 years of monitoring data. We compile information on their geographical distribution, population dynamics, reproductive biology and genetic diversity. Population sizes and survival rates of seedlings exhibited marked annual fluctuations, although fecundity and relative reproductive success remained high throughout the monitoring period. We observed a dominance of mature individuals in all three species, indicating their increased tolerance to salinity. Three subpopulations each of L. phitosianum and L. zacynthium were genotyped using five microsatellite loci. The observed number of alleles and the low gene flow value potentially indicate reduced genetic diversity, inbreeding, and limited gene flow within and among subpopulations of both species. Based on the IUCN categories and criteria, we assess L. korakonisicum as Critically Endangered, L. phitosianum as Near Threatened and L. zacynthium as Endangered. Population viability analyses predict that, among the three species, L. zacynthium will face the highest risk of extinction within the next 50 years. Knowledge of the biology of these species provides data essential for identifying critical factors for their survival and for proposing targeted conservation measures.