It is essential to establish a digital twin scene, which helps to depict the dynamically changing geographical environment accurately. Digital twins could improve the refined management level of intelligent tunnel construction; however, research on geographical twin models primarily focuses on modeling and visual description, which has low analysis efficiency. This paper proposes a knowledge-guided intelligent analysis method for the geometric deformation of tunnel excavation profile twins. Firstly, a dynamic data-driven knowledge graph of tunnel excavation twin scenes was constructed to describe tunnel excavation profile twin scenes accurately. Secondly, an intelligent diagnosis algorithm for geometric deformation of tunnel excavation contour twins was designed by knowledge guidance. Thirdly, multiple visual variables were jointly used to support scene fusion visualization of tunnel excavation profile twin scenes. Finally, a case was selected to implement the experimental analysis. The experimental results demonstrate that the method in this article can achieve an accurate description of objects and their relationships in tunnel excavation twin scenes, which supports rapid geometric deformation analysis of the tunnel excavation profile twin. The speed of geometric deformation diagnosis is increased by more than 90% and the cognitive efficiency is improved by 70%. The complexity and difficulty of the deformation analysis operation are reduced, and the diagnostic analysis ability and standardization of the geographic digital twin model are effectively improved.