The excitation quenching on the energy acceptors in the process of non-Markovian random walks throughout a disordered system of donors has been considered. The encounter theory was exploited to obtain the kinetic equations, which are binary to acceptor concentration. Migration of excitation is described by the CTRW model. The quenching kinetics and the rate constants have been calculated in both hopping and diffusion limits. It has been shown that the role of non-Markovian origin of migration becomes the more important, the larger is the length of the random walk step.