Anomalous (or non-Fickian) diffusion has been widely found in fluid reactive transport and the traditional advection–diffusion–reaction equation (ADRE) based on Fickian diffusion is proved to be inadequate to predict this anomalous transport of the reactive particle in flows. To capture the complex coupling effect among advection, diffusion and reaction, and the energy-dependent characteristics of fluid reactive anomalous transport, in the present paper we analyze $$A\rightarrow B$$ reaction under anomalous diffusion with waiting time depending on the preceding jump length in linear flows, and derive the corresponding generalized master equations in Fourier–Laplace space for the distribution of A and B particles in continuous time random walks scheme. As examples, the generalized ADREs for the jump length of Gaussian distribution and L $${\acute{\mathrm{e}}}$$ vy flight with the probability density function of waiting time being quadratic dependent on the preceding jump length are obtained by applying the derived generalized master equations.