Costa Rican Rain Forest Research Articles

A Cryptic NewJemadia(Hesperiidae: Pyrginae: Pyrrhopygini) from Costa Rica and Panama with a Subtly Distinctive Combination of Blue Rays and White Bands

ABSTRACT. “We have little doubt it is rightly referred to this species,” wrote Godman and Salvin (1893: 262) about their only Panamanian specimen, a female from Calobre, in order to treat the South American Jemadia hewitsonii (Mabille, 1878) in their “Biologia Centrali-Americana. Insecta. Lepidoptera—Rhopalocera.” Half a century later, Evans included her in a type series of the newly described subspecies J. hewitsonii pater Evans, 1951, which after 50 more years Burns elevated to species status. This female is neither J. hewitsonii nor J. pater, but a new species, possibly closest to South American Jemadia ovid Evans, 1951, new status. The new Central American Jemadia, repeatedly reared in the Caribbean rain forest of Costa Rica's Area de Conservacion Guanacaste, is described here as Jemadia suekentonmiller Grishin, sp. nov.; and its facies, genitalia, and DNA barcodes are closely compared with those of various congeners. The twice-misplaced female is a paratype of J. suekentonmiller and is still the only...

Distribution and dietary regulation of an associated facultative Rhizobiales-related bacterium in the omnivorous giant tropical ant, Paraponera clavata

We document a facultative Bartonella-like Rhizobiales bacterium in the giant tropical ant, Paraponera clavata. In a lowland tropical rainforest in Costa Rica, 59 colonies were assayed for the prevalence of the Bartonella-like bacterium (BLB), 14 of which were positive. We addressed three questions: First, how does the prevalence of BLB within colonies vary with environmental conditions? Second, how does diet affect the prevalence of BLB in P. clavata? Third, how does the distribution of BLB among colonies reflect ambient differences in food resources and foraging habits? A variety of environmental variables that may be predictive of the presence of BLB were measured, and diet manipulations were conducted to test whether the prevalence of BLB responded to supplemental carbohydrate or prey. The ambient frequency of BLB is much higher in young secondary forests, but is nearly absent from older secondary forests. The prevalence of BLB inside field colonies increased over the duration of a 2-week carbohydrate supplementation; however, water and prey supplementation did not alter the prevalence of BLB. The diets of the colonies located in young secondary forest, compared to other habitats, have a diet richer in carbohydrates and lower in prey. The abundance of carbohydrate, or the relative lack of N, in a colony's diet influences the occurrence of the BLB microbe in P. clavata. As experimental diet manipulations can affect the facultative presence of an N-cycling microbe, a consistent diet shift in diet may facilitate the emergence of tighter symbioses.

Mites coexistent with neotropical hispine beetles in unfurled leaves of Heliconia: a new genus and family of the Ascoidea (Acari: Mesostigmata: Gamasina)

The genus Antennocheles gen. nov. is based on adults and nymphs of two newly described species associated with hispine beetles of the genera Chelobasis and Cephaloleia occupying unfurled leaves of Heliconia in lowland rainforest of Costa Rica. Within the superfamily Ascoidea, this taxon is so distinctive morphologically and behaviourally as to justify its own family, Antennochelidae, fam. nov. These mites bear remarkably elongated cheliceral shafts, which may extend for lengths greater than the body but are fully ensheathed in repose within the body. Other unique attributes include linear arrangement of hypostomatic setae, a pore-like structure beside the corniculus, and adults with a pair of unique sternal invaginations for enlarged muscle insertions. While undergoing their life history in water films of unfurled host leaves, the mites exhibit a slow, swimming-like behaviour in quest for prey. As leaves unfurl, adult mites run quickly off and on their hispine beetle phoronts for dispersal.http://zoobank.org/urn:lsid:zoobank.org:pub:0876014C-1433-463B-B1A4-4CD6886F9D28

Influence of land crabs Gecarcinus quadratus (Gecarcinidae) on distributions of organic carbon and roots in a Costa Rican rain forest

In Costa Rica's Corcovado National Park, the fossorial land crab, Gecarcinus quadratus (Gecarcinidae), densely populates (1 - 6 m(-2)) a region of forest extending from the Park's Pacific coastline inland to ca. 600 m. Throughout this coastal forest ('crabzone'), crabs selectively forage for fallen leaves and relocate them to subterranean burrow chambers. Comparisons between surface soils (0 - 15 cm) sampled from the crabzone and forest lying immediately inland that is naturally devoid of crabs ('crabless zone') suggest that crabzone top soils contained less organic carbon and fewer fine and very fine roots. In contrast, soils sampled from 70 - 100 cm depths in the crabzone contained twice the carbon of the crabless zone during the dry season but similar values during the wet season. Two years of experimental crab exclusion from 25 m2 replicates established in the crabzone resulted in 16% more organic carbon content in surface soils relative to baseline conditions (n.s.) and 22% more carbon than final control values (P < 0.05). Excavations of burrow chambers, with an average (+/- SD) depth of 48 +/- 12 cm, indicated localized, subterranean pockets of elevated (+ 60 %) organic carbon and increased densities of fine and very fine roots relative to same-depth samples from the crabzone unassociated with burrows chambers.

Sub-Canopy Temperature Dynamics of a Native Tree Plantation from a Lowland Tropical Rainforest in Costa Rica

With urbanization encroaching upon forestlands, characterizing microclimates in secondary forests will be important for the sustainable management of microclimates in agroforestry systems. We used micro-sensors to characterize changes in temperature at different heights in the sub-canopy of both secondary forest and 15-year-old agroforestry plots. Results show that while agroforestry plots had different temperature profiles from the secondary forest, the monoculture plot (consisting of Pentaclethra macroloba) had temperatures similar to the profile found in the secondary forest. This suggests that the replication of temperature profiles in a secondary forest may be independent of the number of tree species in a plot (e.g. polyculture), but may instead depend on the density of a given trees species. These findings further suggest that characterizing temperature microclimates in secondary forests can serve to improve the ecological sustainability of agro-forestry systems.

Distribution of bioluminescent fungi across old-growth and secondary tropical rain forest in Costa Rica

Most research on bioluminescent fungi is concentrated on their taxonomic relationships, while the basics of their natural history and ecological relationships are poorly understood. In this study, we compared the distribution of bioluminescent fungi between old-growth and secondary forest as related to four different soil types at the tropical rainforest of La Selva Biological Station in Costa Rica. The study was conducted during the wet season of 2009. Bioluminescent fungi were sought following eight different transects distributed evenly in old-growth and secondary forests across four different soil types, covering an area of 9 420m2. We found fungi in four different substrates: litter, fallen branches, dead trunks, and roots, for a total of 61 samples. Correspondence analysis showed that the occurrence of fungi and soil types were related (inertia = 0.21, p = 0.071). We found a significant relationship between the presence of fungi and the distribution of soil types (X2 = 18.89, df = 9, p = 0.026). We found only three samples with fruiting bodies, two of which had Mycena and the other had one fungus of the order Xylariales (possibly Hypoxylon sp., Kretzschmariella sp., Xylaria sp.). Future work will concentrate on exploring other aspects of their ecology, such as their dispersal and substrate preference. This information will facilitate field identification and will foster more research on the distribution, seasonality, reproductive phenology and ecological requirements of this group of Fungi.

Use of a watershed hydrologic model to estimate interbasin groundwater flow in a Costa Rican rainforest

AbstractThe watershed hydrologic model TOPMODEL was used to estimate interbasin groundwater flow (IGF) into a small lowland rainforest watershed in Costa Rica. IGF is a common hydrological process but often difficult to quantify. Four‐year simulations (2006–2009) using three different model approaches gave estimates of IGF that were very similar to each other (10.1, 10.2, and 9.8 m/year) and to an earlier estimate (10.0 m/year) based on 1998–2002 data from a budget study that did not use a hydrologic simulation model, providing confidence in the new estimates and suggesting each of the three model approaches is viable. Results show no significant temporal variation in IGF during 2006–2009 (or between this period and the earlier study from 1998–2002). Simulations of the 16 consecutive 3‐month periods in 2006–2009 gave 16 values of IGF rate with a mean (10.1 m/year, standard deviation = 0.6 m/year) very similar to the estimates above from the 4‐year simulations. This suggests the modified version of TOPMODEL can be used to model stream discharge and estimate IGF for sub‐annual time periods during which change in water storage is not necessarily equal to zero. Thus, simple watershed models may be used to estimate IGF based on even relatively short calibration periods, making such models useful tools in the study of this widespread hydrological process that affects water and chemical fluxes and budgets but is often difficult and costly to quantify. Copyright © 2013 John Wiley &amp; Sons, Ltd.

A connection to deep groundwater alters ecosystem carbon fluxes and budgets: Example from a Costa Rican rainforest

AbstractField studies of watershed carbon fluxes and budgets are critical for understanding the carbon cycle, but the role of deep regional groundwater is poorly known and field examples are lacking. Here we show that discharge of regional groundwater into a lowland Costa Rican rainforest has a major influence on ecosystem carbon fluxes. This influence is observable through chemical, isotopic, and flux signals in groundwater, surface water, and air. Not addressing the influence of regional groundwater in the field measurement program and data analysis would give a misleading impression of the overall carbon source or sink status of the rainforest. In quantifying a carbon budget with the traditional “small watershed” mass balance approach, it would be critical at this site and likely many others to consider watershed inputs or losses associated with exchange between the ecosystem and the deeper hydrogeological system on which it sits.

ChemInform Abstract: Phenolic Compounds as Antiangiogenic CMG2 Inhibitors from Costa Rican Endophytic Fungi.

AbstractThe new compounds (I) as well as one known compound are isolated from the endophytic fungus Coccomyces proteae from a Costa Rican rain forest.

Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes

Plants and their associated insect herbivores, represent more than 50% of all known species on earth. The first step in understanding the mechanisms generating and maintaining this important component of biodiversity is to identify plant-herbivore associations. In this study we determined insect-host plant associations for an entire guild of insect herbivores using plant DNA extracted from insect gut contents. Over two years, in a tropical rain forest in Costa Rica (La Selva Biological Station), we recorded the full diet breadth of rolled-leaf beetles, a group of herbivores that feed on plants in the order Zingiberales. Field observations were used to determine the accuracy of diet identifications using a three-locus DNA barcode (rbcL, trnH-psbA and ITS2). Using extraction techniques for ancient DNA, we obtained high-quality sequences for two of these loci from gut contents (rbcL and ITS2). Sequences were then compared to a comprehensive DNA barcode library of the Zingiberales. The rbcL locus identified host plants to family (success/sequence = 58.8%) and genus (success/sequence = 47%). For all Zingiberales except Heliconiaceae, ITS2 successfully identified host plants to genus (success/sequence = 67.1%) and species (success/sequence = 61.6%). Kindt’s sampling estimates suggest that by collecting ca. four individuals representing each plant-herbivore interaction, 99% of all host associations included in this study can be identified to genus. For plants that amplified ITS2, 99% of the hosts can be identified to species after collecting at least four individuals representing each interaction. Our study demonstrates that host plant identifications at the species-level using DNA barcodes are feasible, cost-effective, and reliable, and that reconstructing plant-herbivore networks with these methods will become the standard for a detailed understanding of these interactions.

Modeling acoustic diversity using soundscape recordings and LIDAR-derived metrics of vertical forest structure in a neotropical rainforest

We determined the relationship between acoustic diversity and metrics of vertical forest structure derived from light detection and ranging (LIDAR) data in a neotropical rainforest in Costa Rica. We then used the LIDAR-derived metrics to predict acoustic diversity across the forest landscape. Sound recordings were obtained from 14 sites for six consecutive days during dusk chorus (6 pm). Acoustic diversity was calculated for each day as the total intensity across acoustic frequency bands using the Shannon index and then averaged over the 6 days at each site. A 10 m radius around each site was used to obtain several LIDAR- derived metrics describing the vertical structural attri- butes of the forest canopy. Multiple linear regression (MLR) with Akaike information criterion was used to determine a top-ranked model with acoustic diversity as the dependent variable and the LIDAR metrics as independent variables. Acoustic diversity was modeled for forested areas (where canopy height was (20 m) at 20 m resolution using coefficients obtained from the MLR, and a hotspot analysis was conducted on the resulting layer. Acoustic diversity was strongly corre- lated (R 2 = 0.75) with the LIDAR metrics suggesting that LIDAR-derived metrics can be used to determine canopy structural attributes important to vocal fauna species. The hotspot analysis revealed that the spatial distribution of these canopy structural attributes across the La Selva forest is not random. Our approach can be used to identify forest patches of potentially high acoustic diversity for conservation or management purposes.

Stoichiometric patterns in foliar nutrient resorption across multiple scales

• Nutrient resorption is a fundamental process through which plants withdraw nutrients from leaves before abscission. Nutrient resorption patterns have the potential to reflect gradients in plant nutrient limitation and to affect a suite of terrestrial ecosystem functions. • Here, we used a stoichiometric approach to assess patterns in foliar resorption at a variety of scales, specifically exploring how N : P resorption ratios relate to presumed variation in N and/or P limitation and possible relationships between N : P resorption ratios and soil nutrient availability. • N : P resorption ratios varied significantly at the global scale, increasing with latitude and decreasing with mean annual temperature and precipitation. In general, tropical sites (absolute latitudes < 23°26') had N : P resorption ratios of < 1, and plants growing on highly weathered tropical soils maintained the lowest N : P resorption ratios. Resorption ratios also varied with forest age along an Amazonian forest regeneration chronosequence and among species in a diverse Costa Rican rain forest. • These results suggest that variations in N : P resorption stoichiometry offer insight into nutrient cycling and limitation at a variety of spatial scales, complementing other metrics of plant nutrient biogeochemistry. The extent to which the stoichiometric flexibility of resorption will help regulate terrestrial responses to global change merits further investigation.

Phenolic compounds as antiangiogenic CMG2 inhibitors from costa rican endophytic fungi

Targeting and inhibiting CMG2 (Capillary Morphogenesis Gene protein 2) represents a new strategy for therapeutic agents for cancer and retinal diseases due to CMG2’s role in blood vessel growth (angiogenesis). A high throughput FRET (Förster Resonance Energy Transfer) assay was developed for the identification of CMG2 inhibitors as anti-angiogenetic agents. Bioassay-guided separation led to the isolation and identification of two new compounds (1 and 2) from CR252M, an endophytic fungus Coccomyces proteae collected from a Costa Rican rainforest, and one known compound (3) from CR1207B (Aurapex penicillata). Secondary in vitro assays indicated anti-angiogenic activity. Compound 3 inhibited the endothelial cell migration at 52μM, but did not show any endothelial cell antiproliferative effect at 156μM. The structure of the two new compounds, A (1) and B (2), were elucidated on the basis of extensive spectroscopic analysis, including 1D and 2D NMR experiments.

Experimental litterfall manipulation drives large and rapid changes in soil carbon cycling in a wet tropical forest

Global changes such as variations in plant net primary production are likely to drive shifts in leaf litterfall inputs to forest soils, but the effects of such changes on soil carbon (C) cycling and storage remain largely unknown, especially in C-rich tropical forest ecosystems. We initiated a leaf litterfall manipulation experiment in a tropical rain forest in Costa Rica to test the sensitivity of surface soil C pools and fluxes to different litter inputs. After only 2years of treatment, doubling litterfall inputs increased surface soil C concentrations by 31%, removing litter from the forest floor drove a 26% reduction over the same time period, and these changes in soil C concentrations were associated with variations in dissolved organic matter fluxes, fine root biomass, microbial biomass, soil moisture, and nutrient fluxes. However, the litter manipulations had only small effects on soil organic C (SOC) chemistry, suggesting that changes in C cycling, nutrient cycling, and microbial processes in response to litter manipulation reflect shifts in the quantity rather than quality of SOC. The manipulation also affected soil CO 2 fluxes; the relative decline in CO 2 production was greater in the litter removal plots (-22%) than the increase in the litter addition plots (+15%). Our analysis showed that variations in CO 2 fluxes were strongly correlated with microbial biomass pools, soil C and nitrogen (N) pools, soil inorganic P fluxes, dissolved organic C fluxes, and fine root biomass. Together, our data suggest that shifts in leaf litter inputs in response to localized human disturbances and global environmental change could have rapid and important consequences for belowground C storage and fluxes in tropical rain forests, and highlight differences between tropical and temperate ecosystems, where belowground C cycling responses to changes in litterfall are generally slower and more subtle.

The δ15N signature of the detrital food web tracks a landscape-scale soil phosphorus gradient in a Costa Rican lowland tropical rain forest

Abstract:In this study, we investigated whether landscape-scale variation of soil P accounts for13C and15N composition of detrital invertebrates in a lowland tropical rain forest in Costa Rica. The top 10-cm soil, leaf-litter samples and plant foliage were collected among 18 plots representing a three-fold soil P gradient during 2007–2009. Body tissue of litter invertebrates (extracted from leaf-litter samples) along with soil, leaf litter and green foliage were analysed for total C, total N, δ13C and δ15N values. Differences in δ13C and δ15N signatures across plots and relative trophic distances of detrital food webs (Δ δ15N), and their variation with soil P gradient were evaluated. We found soil P gradient had a significantly positive correlation with δ15N ofAsterogyne martianafoliage, leaf litter, collembolans and oribatid mites. The δ15N of the collembolans and pseudoscorpions positively correlated to leaf-litter δ15N. Δ δ15N between the trophic levels remained consistent across the soil P gradient. Higher δ15N in the collembolans and oribatid mites might be derived from their consumption on15N-enriched decayed debris or fungal hyphae growing on it. It suggests that fine-scale soil P variation can affect trophic dynamics of detrital arthropods via regulation of microbial community and nutrient dynamics.

Inhibition of Tumor Cells Interacting with Stromal Cells by Xanthones Isolated from a Costa Rican Penicillium sp.

CR1642D, an endophytic isolate of Penicillium sp. collected from a Costa Rican rainforest, was identified through a high-throughput approach to identify natural products with enhanced antitumor activity in the context of tumor-stromal interactions. Bioassay-guided separation led to the identification of five xanthones (1-5) from CR1642D. The structures of the xanthone dimer penexanthone A (1) and monomer penexanthone B (2) were elucidated on the basis of spectroscopic analyses, including 2D NMR experiments. All of the compounds were tested against a panel of tumor cell lines in the presence and absence of bone marrow stromal cells. Compound 3 was the most active, with IC(50) values of 1-17 μM, and its activity was enhanced 2-fold against tumor cell line RPMI8226 in the presence of stromal cells (IC(50) 1.2 μM, but 2.4 μM without stromal cells).

Stem characteristics and ant body size in a Costa Rican rain forest

Abstract:Climbing plants provide efficient pathways for ants to access patchy arboreal resources. However, plant stems vary greatly in physical characteristics that are likely to influence ant locomotion. We collected, measured and identified ants foraging on 671 stems of climbing plants at the La Selva Biological Station, Costa Rica. We applied tuna baits to 70% of the observed stems to attract ants to a broad range of stem sizes. We used these data to examine relationships between relative stem roughness, growth form (herbaceous or woody), stem diameter and the body length of foraging ants representing 58 species. The size of the largest ants found on stems generally increased with stem size up to 3.2 mm diameter, whereas the size of the smallest ants present on stems did not vary with stem diameter. The largest ants in the forest (Paraponera clavata) used small stems (&lt;2.7 mm diameter) only when attracted by baits. Average (± SE) ant body length was larger on woody (5.2 ± 0.32 mm) vs. herbaceous (3.3 ± 0.53 mm) stems, but did not differ between rough and smooth stems within these categories. Ant body-size distribution tended toward unimodality on smooth stems. We conclude that small stem diameter acts as a habitat filter based on ant body size, but only for the largest ants in the forest. The filter effect is reduced when ants are attracted to an artificially high quality resource.

The Effects of Soil Bacterial Community Structure on Decomposition in a Tropical Rain Forest

Soil microorganisms are key drivers of terrestrial biogeochemical cycles, yet it is still unclear how variations in soil microbial community composition influence many ecosystem processes. We investigated how shifts in bacterial community composition and diversity resulting from differences in carbon (C) availability affect organic matter decomposition by conducting an in situ litter manipulation experiment in a tropical rain forest in Costa Rica. We used bar-coded pyrosequencing to characterize soil bacterial community composition in litter manipulation plots and performed a series of laboratory incubations to test the potential functional significance of community shifts on organic matter decomposition. Despite clear effects of the litter manipulation on soil bacterial community composition, the treatments had mixed effects on microbial community function. Distinct communities varied in their ability to decompose a wide range of C compounds, and functional differences were related to both the relative abundance of the two most abundant bacterial sub-phyla (Acidobacteria and Alphaproteobacteria) and to variations in bacterial alpha-diversity. However, distinct communities did not differ in their ability to decompose native dissolved organic matter (DOM) substrates that varied in quality and quantity. Our results show that although resource-driven shifts in soil bacterial community composition have the potential to influence decomposition of specific C substrates, those differences may not translate to differences in DOM decomposition rates in situ. Taken together, our results suggest that soil bacterial communities may be either functionally dissimilar or equivalent during decomposition depending on the nature of the organic matter being decomposed.

Similarity and difference among rainforest fruit‐feeding butterfly communities in Central and South America

1. Documenting species abundance distributions in natural environments is critical to ecology and conservation biology. Tropical forest insect faunas vary in space and time, and these partitions can differ in their contribution to overall species diversity. 2. In the Neotropics, the Central American butterfly fauna is best known in terms of general natural history, but butterfly community diversity is best documented by studies on South American fruit-feeding butterflies. Here, we present the first long-term study of fruit-feeding nymphalid species diversity from Central America and provide a unique comparison between Central and South American butterfly communities. 3. This study used 60 months of sampling among multiple spatial and temporal partitions to assess species diversity in a Costa Rican rainforest butterfly community. Abundance distributions varied significantly at the species and higher taxonomic group levels, and canopy and understorey samples were found to be composed of distinct species assemblages. 4. Strong similarities in patterns of species diversity were found between this study and one from Ecuador; yet, there was an important difference in how species richness was distributed in vertical space. In contrast to the Ecuadorian site, Costa Rica had significantly higher canopy richness and lower understorey richness. 5. This study affirms that long-term sampling is vital to understanding tropical insect species abundance distributions and points to potential differences in vertical structure among Central and South American forest insect communities that need to be explored.

Allometry of emergent tree species from saplings to above-canopy adults in a Costa Rican rain forest

Abstract:Relations between crown width and tree height and trunk diameter and tree height were measured for trees of all sizes of six large emergent species (Balizia elegans, Dipteryx panamensis, Hieronyma alchorneoides, Hymenolobium mesoamericanum, Lecythis ampla and Terminalia oblonga) in the lowland tropical wet forest at La Selva, Costa Rica. Thirty to 45 individuals were chosen per species to provide a relatively even height distribution from 1 m up to the maximum encountered height. Among small juveniles, the crown widths of the two species with the smallest leaves and horizontally spreading branches were greater than those of the four large-leaved species. On reaching and exceeding the canopy, all but one species showed pronounced increases in crown width with increasing height. These patterns are linked to leaf size and first branching height in small juveniles and low densities of emergent trees at La Selva and other tropical forests, where crown expansion in all directions enhances light interception under the equatorial sun in trees that are not crowded by neighbours of similar height.