During the race season of racing pigeons, the demands on their care, zoohygienic conditions, balanced feeding and maintaining an optimal state of health increase. Any deviation in the mentioned factors causes a stressful situation associated with the changes in the bacterial representation in the digestive tract, weakens the individual´s state of health and thus reduces his performance. The work aimed to monitor the health status of racing pigeons and evaluate their performance during one racing season. From 60 pigeons, swabs from the cloaca and crop were taken at regular intervals at the beginning, in the middle and at the end of the race season with a focus on monitoring the representation of the intestinal microflora and the most common diseases. The pigeons were also clinically examined with subsequent sampling for monitoring coccidiosis, trichomonosis and respiratory syndrom during the individual phases of the race season. The total count of bacteria (TCB) in both the cloaca and the crop did not show any significant variation in their abundance throughout the entire racing season. On the other hand, with increasing stress and the occurrence of diseases, the coliform bacteria (CB) in the cloaca and crop was increased in the end of the racing season. Of the identified bacteria Ent. columbae, E. coli, Ent. faecium, Ent. gallinarum a S. intermedius were most frequently represented in swabs from the cloaca. As in the cloaca, the swabs from the crop were most frequently represented by Ent. columbae a E. coli together with lactobacilli and Ent. gallinarum. At the end of race season, E. coli, Ent. faecium, Ent. columbae and staphylococci were significantly represented in the cloaca and in the crop Ent. columbae, E. coli, Ent. gallinarum together with staphylococci again. By comparing the prevalence of Eimeria spp. and Trichomonas spp. before, during and at the end of the race season were noticed their increased occurrence at the end of the season. From the race placements, we found that in pigeons in which the prevalence of opportunistic pathogens Staphylococcus spp. a Ent. gallinarum from swabs of the cloaca and crop at the lowest level together with the occurrence of Eimeria spp., they achieved constant results the entire race season and also achieved the best points position.