R30 Degrees Research Articles

Quasi-Free-Standing Epitaxial Graphene on SiC Obtained by Hydrogen Intercalation

Quasi-free-standing epitaxial graphene is obtained on SiC(0001) by hydrogen intercalation. The hydrogen moves between the (6 square root(3) x 6 square root(3))R30 degrees reconstructed initial carbon layer and the SiC substrate. The topmost Si atoms which for epitaxial graphene are covalently bound to this buffer layer, are now saturated by hydrogen bonds. The buffer layer is turned into a quasi-free-standing graphene monolayer with its typical linear pi bands. Similarly, epitaxial monolayer graphene turns into a decoupled bilayer. The intercalation is stable in air and can be reversed by annealing to around 900 degrees C.

Atomic structure of the Ag/Ge(111)-(3×3) surface: From scanning tunneling microscopy observation to theoretical study

The atomic structure of the Ag/Ge(111)-(sq.rt.(3) x sq.rt.(3))R30 degrees surface is studied by scanning tunneling microscopy (STM) and the density functional theory (DFT) calculations. Our STM images have shown a structure which is different from the widely accepted honeycomb-chained-triangle (HCT) model before. The structure is similar to the inequivalent triangle (IET) model found for the Ag/Si(111)-(sq.rt.(3) x sq.rt(3))R30 degrees surface. This model proposed two types of silver triangles with different sizes in the unit cell, corresponding to the bright spots and the dark spots in the STM image. A distinguishable hexagonal pattern of the IET structure was well disclosed in the temperature range from 100 to 473 K in our STM studies for Ag/Ge(111)-(sq.rt.(3) x sq.rt.(3))R30 degrees. Furthermore, the result of the DFT calculations showed that the IET structure is 0.20 eV energetically more stable than the HCT model. Besides, the Ge triangles, which were not disclosed in earlier STM research, are found in this study.

Aqueous Electrodeposition of Ge Monolayers

The electrodeposition of germanium on Au(111) in aqueous solutions has been investigated by means of cyclic voltammetry, Auger electron spectroscopy, and in situ scanning tunneling microscopy (STM). The data yield a picture of germanium deposition, which starts with the formation of two well-ordered hydroxide phases, with 1/3 ML and 4/9 ML coverages upon initial reduction of the Ge(IV) species (probably H(2)GeO(3) at pH 4.7). Those structures appear to result from a three-electron reduction to form surface-limited structures with (square root(3) x square root(3))R30 degrees or (3 x 3) unit cells, respectively. Further reduction, probably in a two-electron process from the hydroxide structures, resulted in a germanium hydride structure, again surface-limited, with a coverage of close to 0.8 ML. The hydride structure is very flat, though with the periodic modulation characteristic of a Moiré pattern. Longer deposition times and lower potentials resulted in increased coverage of Ge in some cases, but with apparently limited coverage as a function of pH. The maximum Ge coverage, about 4 ML, was observed using a pH 9.32 deposition solution. At potentials negative of the Moiré pattern, about -850 mV versus Ag/AgCl, a "corruption" of the smooth Moiré pattern occurred. This roughening appears to mark the initial formation of a Au-Ge alloy, accounting for the observation of coverage in excess of that needed to form the Moiré pattern at some pH values.

Partial Dissociation of Water onFe3O4(001): Adsorbate Induced Charge and Orbital Order

The interaction of water with Fe3O4(001) is studied by density functional theory calculations including an on-site Coulomb term. For isolated molecules, dissociative adsorption is strongly promoted at surface defect sites, while at higher coverages a hydrogen-bonded network forms with alternating molecular and dissociated species. This mixed adsorption mode and a suppression of the (square root of 2 x square root of 2)R45 degrees reconstruction are confirmed by a quantitative low energy electron diffraction analysis. Adsorbate induced electron transfer processes add a new dimension towards understanding the catalytic activity of magnetite(001).

The Role of Gold Adatoms and Stereochemistry in Self-Assembly of Methylthiolate on Au(111)

On the basis of high resolution STM images and DFT modeling, we have resolved low- and high-coverage structures of methylthiolate (CH(3)S) self-assembled on the Au(111) surface. The key new finding is that the building block of all these structures has the same stoichiometry of two thiolate species joined by a gold adatom. The self-arrangement of the methylthiolate-adatom complexes on the surface depends critically on their stereochemical properties. Variations of the latter can produce local ordering of adatom complexes with either (3 x 4) or (3 x 4 square root(3)) periodicity. A possible structural connection between the (3 x 4 square root(3)) structure and commonly observed (square root(3) x square root(3))R30 degrees phase in methylthiolate self-assembled monolayers is developed by taking into account the reduction in the long-range order and stereochemical isomerization at high coverage. We also suggest how the observed self-arrangements of methylthiolate may be related to the c(4 x 2) phase of its longer homologues.

A COMPLEMENTARY RADIOGRAPHIC PROJECTION OF THE EQUINE TEMPOROMANDIBULAR JOINT

The complexity of the equine skull makes the temporomandibular joint a difficult area to evaluate radiographically. The goal of this study was to determine the optimal angle for a complementary radiographic projection of the equine temporomandibular joint based on a computed tomography (CT) cadaver study. CT was performed on six equine cadaver heads of horses that were euthanized for other reasons than temporomandibular joint disease. After the CT examination, 3D reconstruction of the equine skull was performed to subjectively determine the angle for a complementary radiographic projection of the temporomandibular joint. The angle was measured on the left and right temporomandibular joint of each head. Based on the measurements obtained from the CT images, a radiographic projection of the temporomandibular joint in a rostra-145 degrees ventral-caudodorsal oblique (R45 degrees V-CdDO) direction was developed by placing the X-ray unit 30 degrees laterally, maintaining at the same time the R45 degrees V-CdDO angle (R45 degrees V30 degrees L-CdDLO). This radiographic projection was applied to all cadaver heads and on six live horses. In three of the live horses abnormal findings associated with the temporomandibular joint were detected. We conclude that this new radiographic projection of the temporomandibular joint provides superior visualization of the temporomandibular joint space and the articular surface of the mandibular condyle.

Efficient First-Principles Simulation of Noncontact Atomic Force Microscopy for Structural Analysis

We propose an efficient scheme to simulate noncontact atomic force microscopy images by using first-principles self-consistent potential from the sample as input without explicit modeling of the atomic force microscopy tip. Our method is applied to various types of semiconductor surfaces including Si(111)-(7x7), TiO2(110)-(1x1), Ag/Si(111)-(sqrt[3]xsqrt[3])R30 degrees, and Ge/Si(105)-(1x2) surfaces. We obtain good agreement with experimental results and previous theoretical studies, and our method can aid in identifying different structural models for surface reconstruction.

Restructuring of the Pt3Sn(111) surfaces induced by atomic and molecular oxygen from first principles

The surface restructuring of Pt(3)Sn(111) induced by oxygen chemisorption is examined by means of density-functional theory calculations. Molecular and atomic oxygen chemisorption is investigated on the two available terminations of the bulk alloy--(2 x 2) and (square root(3) x square root(3))R30 degrees--these two surfaces differing by the tin content and the nature of chemical sites. An extensive geometric, energetic, and vibrational analysis is performed including the influence of oxygen coverage in the case of atomic adsorption. For molecular adsorption, regular structures have been obtained for both surfaces with a clear effect of tin on the stability of the adsorption forms. In contrast, for atomic adsorption, two oxygen chemical states are found. In particular, a peculiar surface restructuring, involving the formation of a network of SnO(2) species, appears for large oxygen coverage. However the two terminations present discrepancies for the restructuring mechanism all along the oxygen coverage increase. All these results are supported by a systematic vibrational analysis.

Thermodynamics and Kinetics of Graphene Growth on SiC(0001)

The formation of surface phases on the Si-terminated SiC(0001) surface, from the Si-rich (3x3) structure, through the intermediate (1x1) and (sqrt[3]xsqrt[3])-R30 degrees structures, to the C-rich (6sqrt[3]x6sqrt[3]) phase, and finally epitaxial graphene, has been well documented. But the thermodynamics and kinetics of these phase formations are poorly understood. Using in situ low energy electron microscopy, we show how the phase transformation temperatures can be shifted over several hundred degrees Celsius, and the phase transformation time scales reduced by several orders of magnitude, by balancing the rate of Si evaporation with an external flux of Si. Detailed insight in the thermodynamics allows us to dramatically improve the morphology of the final C-rich surface phases, including epitaxial graphene.

Understanding adsorption of hydrogen atoms on graphene

Adsorption of hydrogen atoms on a single graphite sheet (graphene) has been investigated by first-principles electronic structure means, employing plane-wave based periodic density functional theory. A 5 x 5 surface unit cell has been adopted to study single and multiple adsorptions of H atoms. Binding and barrier energies for sequential sticking have been computed for a number of configurations involving adsorption on top of carbon atoms. We find that binding energies per atom range from approximately 0.8 to approximately 1.9 eV, with barriers to sticking in the range 0.0-0.15 eV. In addition, depending on the number and location of adsorbed hydrogen atoms, we find that magnetic structures may form in which spin density localizes on a square root(3) x square root(3)R30 degrees sublattice and that binding (barrier) energies for sequential adsorption increase (decrease) linearly with the site-integrated magnetization. These results can be rationalized with the help of the valence-bond resonance theory of planar pi conjugated systems and suggest that preferential sticking due to barrierless adsorption is limited to formation of hydrogen pairs.

Revelation of the spatial structures and polymerization of aniline on Au(100) electrode by in situ scanning tunnelling microscopy

In situ STM imaging of Au(100) electrode in 1 M HClO4 + 0.03 M aniline revealed highly ordered aniline adlattices of (2 radical 2 x 4 radical 2)R45 degrees and (radical 10 x radical 10)R18 degrees and polyaniline molecules exhibiting wiggling conformations at potentials negative and positive of 0.95 V (vs. reversible hydrogen electrode), respectively.

Order and disorder in the wetting layer on Ru(0001)

The growth of an intact water monolayer on Ru(0001) has been investigated by comparing the ordering of O and Ru, determined by low-energy electron diffraction (LEED), with that of the top layer of O and H, as probed by He atom scattering (HAS). Although LEED shows that water forms an extended commensurate (square root 3 x square root 3) R30 degrees structure as the coverage approaches 0.67 monolayer, the HAS distributions are insensitive to the exact water coverage and show a very low specular reflectivity, indicating a disordered water layer. The angular profile from a D2O monolayer shows a broad diffuse peak in the angular scattering distribution at a momentum exchange similar to the position of the second-order (1/3, 1/3) peaks, but the maxima show little variation with scattering azimuth. H2O shows a slightly higher He reflectivity and more clearly resolved angular structure, with broad, faint peaks appearing close to the first-order diffraction positions. The origin of this disorder is discussed based on density functional calculations for the monolayer which find that water forms chains of flat and H-down molecules within a hexagonal hydrogen-bonding network, rather than the ice bilayer usually assumed. This arrangement leads to long-range order in the O location, but disorder in the O height and the proton orientation. We discuss how this combination of lateral order in the adsorption site, but disorder in the water orientation, is reflected in the sharp square root 3 LEED pattern but diffuse, broad peaks in He scattering.

In Situ Scanning Tunneling Microscopy on the Dynamic Process of the Replacement of Coronene on Au (111) by 6-Mercapto-1-Hexanol

The replacement of coronene monolayer on Au (111) by 6-mercapto-1-hexanol (MHO) was studied by in situ scanning tunneling microscopy (STM) in solutions. It was found that the rate of replacement depends strongly on the concentration of MHO. The replacement finished within a second at a higher concentration of MHO. At a lower concentration, the slow replacement could be followed by in situ STM. The replacement occurred initially near the elbow position of reconstructed Au (111) with the formation of pits in a single or several missing molecules. With the proceeding of replacement, these small pits expanded, and the surrounding coronene molecules were gradually substituted by MHO, which developed into ordered domains within a spatial confined environment. Meanwhile, the reconstruction of Au (111) was lifted. The replacement expanded fast along the reconstruction lines in the domain. For the fast replacement, a ( radical3 x radical3) R30 degrees adlattice was observed, while a c(4 x 2) superlattice was observed for the slow replacement. The close-packed phase of MHO self-assembled monolayers (SAMs) appeared directly instead of a flat-lying phase, which implied that the coronene molecules resist the direct contact of hydrocarbon chain of MHO with Au (111) surface. The replacing rate of the overall process exhibited a signoidal shape with time.

Highly Ordered C60 Monolayer Self-Assembled by Using an Iodine Template on an Au(111) Surface in Solution

An iodine-modified Au(111) surface, (I/Au(111)), was used as a substrate to prepare a C 60 adlayer by self-organization in a benzene solution. A highly ordered C 60 adlayer was successfully prepared due to the moderate C 60-I/Au(111) interaction. Two lattice structures, (2 square root 3 x 2 square root 3) R30 degrees and p(2 x 2), were imaged for this C 60 adlayer. For the first structure, a featureless ball-like molecular shape was imaged, ascribed to the molecular rotation resulting from a symmetrical location between C 60 and iodine atoms. For the p(2 x 2) structure, the asymmetrical location of C 60 with respect to the iodine atoms freezes the C 60 molecules on the substrate, leading to a clear image of intramolecular structure. The intermediate iodine atoms in the C 60/I/Au(111) adlayer can be desorbed by electrochemically reduction without significantly affecting the ordering of the C 60 adlayer. However, the internal pattern of C 60 disappears in the absence of iodine.

A first-principles study of K adsorption on Pb(111)

Ab initio total-energy density functional theory calculations with supercell models have been employed to investigate the R30 degrees and (2 x 2) structures of K on the Pb(111) surface. Four "on-surface" sites and a substitutional site were considered. The calculations showed that the substitutional site is more stable than all the on-surface sites, due to its low vacancy formation energy. The calculated R30 degrees geometry agrees well with the LEED results. The density-of-states analysis indicates that the K atom loses part of its loosely bound valence s electron. From the electron density distributions, it was found that the lowering of the work function after the substitutional adsorption can be attributed to the dipole moment, associated with the positively polarized adsorbate atom that is characterized by charge depletion from the K vacuum sides and charge accumulation in the region between K and Pb atoms. Our results indicate that the bonding of K with the Pb(111) surface has a mixed ionic and metallic bond character.

Structural Characterization of Aldehyde-Terminated Self-Assembled Monolayers

The structure of aldehyde-terminated alkanethiol self-assembled monolayers (SAMs) on Au(111) is investigated using scanning tunneling microscopy (STM), atomic force microscopy (AFM), and density functional theory (DFT) calculations. For the first time, the structures of aldehyde-terminated SAMs are revealed with molecular resolution. SAMs of 11-mercapto-1-undecanal exhibit the basic (radical3xradical3)R30 degrees periodicity and form various c(4x2) superstructures upon annealing. In conjunction with DFT studies, the models of the (radical3xradical3)R30 degrees and the c(4x2) superstructures are constructed. In comparison with alkanethiol SAMs, the introduction of aldehyde-termini results in smaller domain size, lower degree of long-range order, large coverage of disordered areas, and higher density of missing molecules and other point defects within domains of closely packed molecules. The origin of these structural differences is mainly attributed to the strong dipole-dipole interactions among the aldehyde termini.

Deciphering Structural Domains of Alkanethiol Self-Assembled Configurations by Friction Force Microscopy

High resolution and high sensitivity friction force microscopy (FFM) is used to distinguish between different crystallographic domains of standing up molecular configurations of self-assembled alkanethiols partially covering Au(111) surfaces. We propose two suitable methods to decipher structural domains of the same configuration depending on the two-dimensional (2D) symmetry of the organic adlayer. For the hexagonal (radical3xradical3)R30 degrees where no differences among equivalent domains are expected in lattice-resolved scanning force imaging, different molecular domains however can be observed in lateral force images because of the friction asymmetry caused by domains presenting different relative orientations between the molecular tilt direction and the tip scanning direction. Since no lateral packing anisotropy is expected in this close-packed configuration, no friction anisotropy however is observed. Conversely, because of its rectangular space group symmetry, lattice resolved stick-slip imaging is enough to solve between the existing domains for the (2xradical3) rectangular configuration.

A Scanning Tunneling Microscopy Study of Distyrylbenzene on Ag/Ge(111)-( × )R30°

The adsorption and self-organized monolayers of trans,trans-distyrylbenzene (tt-DSB) and cis,cis-distyrylbenzene (cc-DSB) on Ag/Ge(111)-(sqr rt of 3 x sqr rt of 3)R30 degrees (Ag/Ge(111)-sqr rt of 3) were studied by low-temperature scanning tunneling microscopy (STM) in ultrahigh vacuum. tt-DSB and cc-DSB overlayers were prepared by vapor deposition at a substrate temperature of 200 K and imaged after the samples were cooled to 100 K. High-resolution images allow identification of the internal structure of individual tt-DSB molecules with three phenyl rings and their molecular arrangements on the Ag/Ge(111)-sqr rt of 3 surface. It is found that the intermolecular distance between two terminal phenyl rings in tt-DSB is about twice the lattice constant of Ag/Ge(111)-sqr rt of 3. Such a lattice match makes Ag/Ge(111)-sqr rt of 3 an ideal substrate for tt-DSB self-organization and the formation of a (3 x 1) overlayer unit cell. The structural model and the molecule registry corresponding to STM images for the adlayers of tt-DSB on Ag/Ge(111)-sqr rt of 3 are proposed and discussed. For cc-DSB adsorption on Ag/Ge(111)-sqr rt of 3, uniform molecular overlayers with two discernible molecular images corresponding to two major types of cc-DSB conformers were observed. The coexistence of multiple conformers and the mismatch of molecular dimension of cc-DSB with the substrate unit cell length limit the growth of large cc-DSB domains.

Conformation and Dynamics of Arylthiol Self-Assembled Monolayers on Au(111)

We report a computational investigation of the conformation and the dynamics of self-assembled monolayers (SAMs) of a set of aromatic thiols arranged in the ( radical3 x radical3)-R30 degrees packing ratio on a Au(111) surface using molecular dynamics (MD) simulations. It was found that the molecular conformations were better defined for the arylthiol with two phenyl groups as compared to those with a single phenyl group and that the chemical structure of the head and tail groups had a considerable influence on the system geometry. In line with the density functional theory (DFT) calculations of small thiol molecules, we found for the SAMs that the face-centered cubic (fcc) site on the Au(111) surface was the most preferred, followed by the hexagonal close-packed (hcp) site, while the bridge position showed the characteristics of a local energy maximum. The dynamics of thiol head groups on these three Au sites was found to govern the overall dynamics of SAMs as measured by the mean square displacement. We also report that both the conformation and the dynamics on the studied time scale were driven by the SAM formation energy.

Germanium Adsorption on Ag(111): An AES-LEED and STM Study

The adsorption of germanium on Ag(111) has been investigated using Scanning Tunneling Microscopy, Auger Electron Spectroscopy and Low Energy Electron Diffraction. From the shape of the Auger peak-to-peak versus time curves, we deduce that at room temperature the growth mode is nearly layer-by-layer at least for the first two layers. In the sub-monolayer range, the growth starts by the formation of a (mean square root of 3 x mean square root of 3)R30 degrees surface superstructure which is complete at 1/3 monolayer coverage. Beyond this coverage a rectangular c(mean square root of 3 x 7) superstructure is observed. STM images reveal that this last reconstruction is formed by an ordered arrangement of self-assembled Ge tetramers giving rise to a surprising undulation of the surface.