Quantum Theory Of Atoms In Molecules Research Articles

Chalcogenides encapsulated Pt-doped carbon quantum dot (Pt@CQD) as a carrier for the controlled release of lapachone: Outlook from theoretical calculations

While cancer remains a significant health concern for humans, and is a serious and life-threatening disease, this research introduces an innovative drug delivery strategy employing platinum-doped carbon quantum dots (Pt@CQD) decorated with chalcogenide (O, S, Te) atoms for targeted delivery of the anti-inflammatory drug lapachone (LPC), which was analysed through density functional theory (DFT) at the ωB97XD/def2svp level of theory. Adsorption studies indicated exothermic behaviour, with negative energies for LPC_Pt@CQD, LPC_OdecPt@CQD, LPC_SdecPt@CQD, and LPC_TedecPt@CQD with corresponding values of −25.549 kcal/mol, −24.583 kcal/mol, −24.629 kcal/mol and − 24.419 kcal/mol respectively, indicating their chemisorption strengths. The quantum theory of atoms in molecules (QTAIM) and non-covalent interaction (NCI) analyses highlight weak and partial interactions among the complexes. Significantly, the engineered systems exhibit notable drug-release properties, especially LPC_OdecPt@CQD, where we observed a considerably slight physisorption and an adsorption energy of 10.277 kcal/mol and a protonation energy gap (ΔE) of 2.648 eV which balances effective adsorption and the ability to release the drug when needed. Furthermore, molecular dynamics and reactivity analysis revealed high stability and biological activity respectively among the designed systems, making them promising candidates for therapeutic delivery and holding potential for further in vivo and clinical investigations.

Structure-Activity relationship of 5‑butyl‑4,6-dimethyl-2-{[4-(o-fluorophenyl)-1-piperazinyl]-2-oxoethyl}-pyrrolo[3,4-c]pyrrole-1,3(2H,5H)‑dione: An experimental and theoretical study

Synthesis of 5‑butyl‑4,6-dimethyl-2-{[4-(o-fluorophenyl)-1-piperazinyl]-2-oxoethyl}-pyrrolo[3,4-c]pyrrole-1,3(2H,5H)‑dione 3 is reported. The compound was obtained by direct alkylation of 3,4-pyrrolodicarboximide 1 with (1-chloroacetyl-4-(o-fluorophenyl)piperazine) 2 in DMF. Its physico-chemical features were characterized by 1H NMR, 13C NMR, FT-IR, MS spectra, and elemental analysis. Single-crystal X-ray diffraction was also recorded. A colorimetric inhibitor screening assay was used to determine its inhibitory potency towards COX-1 and COX-2. It was found that the compound exhibits anti-inflammatory activity higher than the reference structure – Meloxicam (MXM). According to the experimental results, the tested compound inhibited the activity of COX-1 and COX-2 respectively. In the next step, molecular docking was performed to estimate the binding affinity of compound 3 and commercially available reference compounds for COX-1/COX-2 enzymes. It was found that the binding affinity of 3 is higher than for the reference compounds. Quantum Theory of Atoms In Molecules (QTAIM) and Reduced Density Gradient (RDG) methods were used to reveal non-covalent interactions present in the COX-1/COX-2 binding pocket. Finally, Born-Oppenheimer molecular dynamics (BOMD) based on semiempirical forces was carried out to gain insight into the dynamic features of the studied complexes and confirmed the fact that the weak hydrogen bonds play the most important role in stabilizing the ligand conformation for the studied COX-2 complexes with compound 3 and Rofecoxib.

Reactions of Ru3(CO)12 with 1,5-bis(diphenylphosphino)pentane: Synthesis, characterization, crystal structure, Hirshfeld surface and QTAIM Analysis of Ru3(CO)10(µ-dpppe)

Reactions of Ru3(CO)12 with 1,5-bis(diphenylphosphino)pentane (dpppe) in THF induced by sodium benzophenone ketyl radical anion, resulted in the expected metal cluster [Ru3(CO)11]2(µ-dpppe) (1) and Ru3(CO)10(µ-dpppe) (2) as the main products. Clusters 1 and 2 were characterized by spectroscopic methods, including Fourier-transform infrared spectroscopy (FTIR) and nuclear magnetic resonance spectroscopy (1H and 31P{1H} NMR).The structural features were determined using single crystal X-ray diffraction analysis. In cluster 1 and 2, the (dpppe) links two trinuclear cluster units via phosphine moieties and bridges to Ru–Ru bond, respectively. Both clusters were stabilized by the presence of C–H⋯O interactions and were further analyzed by Hirshfeld surface analysis. The bonding interactions within cluster 2 were studied using the Quantum Theory of Atoms in Molecules (QTAIM). Various local and integral topological properties of the electron density were calculated, along with the source function (SF) calculations and electron localization function (ELF) analysis.

Investigating the electronic properties of edge glycine/biopolymer/graphene quantum dots

This study systematically investigated four types of graphene quantum dots (GQDs) AHEX, ZTRI, ZHEX, and ATRI, and their interactions with glycine to form GQD-glycine complexes. Utilizing density functional theory (DFT) and the PM6 semiempirical method, the study analyzed electronic properties and structure-activity relationships. Global reactivity indices were calculated using Koopmans’ theorem, and quantitative structure-activity relationship (QSAR) parameters were assessed via SCIGRESS 0.3. The study further explored interactions using density of states (DOS) and quantum theory of atoms in molecules (QTAIM) analyses. Key findings revealed that glycine interaction significantly increased the total dipole moment (TDM) and decreased the HOMO/LUMO energy gap (ΔE) for the GQD-glycine complexes. Notably, ZTRI/glycine showed a TDM of 4.535 Debye and a reduced ΔE of 0.323 eV, indicating enhanced reactivity. Further interactions with cellulose, chitosan, and sodium alginate identified the ZTRI/glycine/sodium alginate composite as the most reactive, with a TDM of 8.020 Debye and the lowest ΔE of 0.200 eV. This composite also exhibited the highest electrophilicity index (56.421) and lowest chemical hardness (0.145 eV), underscoring its superior reactivity and stability. DOS analysis revealed that biomolecules contributed the most to molecular orbitals, with carbon atoms contributing the least. QTAIM analysis confirmed the greater stability of the ZTRI/glycine/sodium alginate complex compared to other studied composites. These results highlight the enhanced reactivity and stability of GQDs when interacting with glycine and sodium alginate.

Molecular Aspects of the Interactions between Selected Benzodiazepines and Common Adulterants/Diluents: Forensic Application of Theoretical Chemistry Methods.

Benzodiazepines are frequently encountered in crime scenes, often mixed with adulterants and diluents, complicating their analysis. This study investigates the interactions between two benzodiazepines, lorazepam (LOR) and alprazolam (ALP), with common adulterants/diluents (paracetamol, caffeine, glucose, and lactose) using infrared (IR) spectroscopy and quantum chemical methods. The crystallographic structures of LOR and ALP were optimized using several functionals (B3LYP, B3LYP-D3BJ, B3PW91, CAM-B3LYP, M05-2X, and M06-2X) combined with the 6-311++G(d,p) basis set. M05-2X was the most accurate when comparing experimental and theoretical bond lengths and angles. Vibrational and 13C NMR spectra were calculated to validate the functional's applicability. The differences between LOR's experimental and theoretical IR spectra were attributed to intramolecular interactions between LOR monomers, examined through density functional theory (DFT) optimization and quantum theory of atoms in molecules (QTAIM) analysis. Molecular dynamics simulations modeled benzodiazepine-adulterant/diluent systems, predicting the most stable structures, which were further analyzed using QTAIM. The strongest interactions and their effects on IR spectra were identified. Comparisons between experimental and theoretical spectra confirmed spectral changes due to interactions. This study demonstrates the potential of quantum chemical methods in analyzing complex mixtures, elucidating spectral changes, and assessing the structural stability of benzodiazepines in forensic samples.

Novel AIE and solvatochromism exhibiting TPE based organic fluorophore with excellent emission properties in solid and solution phase for latent fingerprint and metronidazole sensing in real samples

Organic molecules with extended aromaticity are important when designing probes with optical properties. Herein, we designed and synthesized a novel tetraphenylethylene (TPE) based organic molecule TC exhibiting excellent photophysical characteristics. A thorough and in-depth study of the optical properties of probe TC was performed including solvatochromism, aggregation and solid-state studies using ultraviolet–visible (UV Vis) and fluorescence spectroscopy. Also, its optical properties under a UV 365 nm laser were investigated. The compound exhibited aggregation induced emission (AIE) which was thoroughly investigated in a H2O/DMF system and later utilized in formulation of invisible ink and latent fingerprint sensing. Moreover, the excellent emission properties of probe TC were utilized for the highly selective detection of the antibiotic metronidazole (MET) in real samples including human serum and artificial urine. Furthermore, portable TLC and paper-based strips were designed for the on-site detection of MET. Additionally, the mechanism of selective sensing of MET was thoroughly investigated through spectroscopic studies including titration NMR, fluorescence, UV Vis studies and DFT studies. Photoinduced electron transfer (PET) was attributed as the plausible sensing mechanism for the detection of MET. Scanning electron microscopy (SEM) also supported the sensing of MET through change in morphology. DFT calculations involved the measurement of thermodynamic stability, reduced density gradient (RDG) analysis, molecular orbital, and charge transfer studies as well as analysis of quantum theory of atoms in molecules (QTAIM). All the studies supported the presence of non-covalent interactions between probe TC and MET.

Theoretical Study of the Effects of Different Coordination Atoms (O/S/N) on Crystal Structure, Stability, and Protein/DNA Binding of Ni(II) Complexes with Pyridoxal-Semi, Thiosemi, and Isothiosemicarbazone Ligand Systems

Nickel transition metal complexes have shown various biological activities that depend on the ligands and geometry. In this contribution, six Ni(II) nitrate complexes with pyridoxal-semi, thiosemi, and isothiosemicarbazone ligands were examined using theoretical chemistry methods. The structures of three previously reported complexes ([Ni(PLSC)(H2O)3]∙2NO3−, [Ni(PLTSC)2] ∙2NO3−∙H2O, and [Ni(PLITSC)(H2O)3]∙2NO3−) were investigated based on Hirshfeld surface analysis, and the most important stabilization interactions in the crystal structures were outlined. These structures were optimized at the B3LYP/6-311++G(d,p)(H,C,N,O,(S))/LanL2DZ(Ni) level of theory, and the applicability was checked by comparing theoretical and experimental bond lengths and angles. The same level of theory was applied for the optimization of three additional structures, ([Ni(PLSC)2]2+, [Ni(PLTSC)(H2O)3]2+, and [Ni(PLITSC)2]2+). The interactions between selected ligands and Ni(II) were examined using the Natural Bond Orbital (NBO) and Quantum Theory of Atoms in Molecules (QTAIM) approaches. Particular emphasis was placed on interactions between oxygen, sulfur, and nitrogen donor atoms and Ni(II). Human Serum Albumin (HSA) and the DNA-binding properties of these complex cations were assessed using molecular docking simulations. The presence of water molecules and various substituents in the thermodynamics of the processes was demonstrated. The results showed significant effects of structural parameters on the stability and reactivity towards important biomolecules.

The Counterion (SO42− and NO3−) Effect on Crystallographic, Quantum-Chemical, Protein-, and DNA-Binding Properties of Two Novel Copper(II)–Pyridoxal-Aminoguanidine Complexes

New Cu(II) complexes with pyridoxal-aminoguanidine (PLAG) ligands and different counterions (SO42− and NO3−) were prepared and their crystal structures were solved by the X-ray crystallography. The geometries of the obtained complexes significantly depended on the counterions, leading to the square-pyramidal structure of [Cu(PLAG)NO3H2O]NO3 (complex 1) and square-planar structure of [Cu(PLAG)H2O]SO4 (complex 2). The intermolecular interactions were examined using the Hirshfeld surface analysis. The theoretical structures of these complexes were obtained by optimization at the B3LYP/6-311++G(d,p)(H,C,N,O,S)/LanL2DZ(Cu) level of theory. The Quantum Theory of Atoms in Molecules (QTAIM) was applied to assess the strength and type of the intramolecular interactions and the overall stability of the structures. The interactions between the complexes and transport proteins (human serum albumin (HSA)) and calf thymus DNA (CT-DNA) were examined by spectrofluorometric/spectrophotometric titration and molecular docking. The binding mechanism to DNA was assessed by potassium iodide quenching experiments. The importance of counterions for binding was shown by comparing the experimental and theoretical results and the examination of binding at the molecular level.

Cuprophilic Interactions in Polymeric [Cu10O2(Mes)6]n.

The properties of cuprophilic compounds and the underlying fundamental principles responsible for the Cu(I)···Cu(I) interactions have been the subject of intense research as their diverse structural and physical attributes are being explored. In this light, we performed a new study of the compound [Cu10O2(Mes)6] reported by Haakansson et al. using state of the art experimental and theoretical analysis techniques. Doing this, we found the compound to be a polymer in the solid state, best written as [Cu10O2(Mes)6]n, with unsupported Cu(I)···Cu(I) contacts linking the monomers (2.776 Å). The monomeric unit also exhibits various cuprophilic contacts bridged by mesityl and/or oxo ligands. The compound was analyzed in its solid state, revealing luminescent properties resulting from two distinct fluorescent emissions, as well as in solution, in which its polymeric structure reversibly decomposes. A quantum theory of atoms in molecules (QTAIM) analysis based on density functional theory (DFT) calculations allows to characterize the various Cu(I)···Cu(I) contacts, in which only a few, and not necessarily the shortest, are associated with a bond critical point. Additionally, an energy decomposition analysis of the bonding between monomers indicates that it is dominated by dispersion forces in which the ligands play a dominant role, resulting in bonding energies significantly larger than found in previous DFT investigations based on less bulky models.

Mechanism of ammonium adsorption onto the surface of heteroatom doped graphene quantum dots

The adsorption mechanism of ammonium (NH4+) ion onto graphene quantum dots (GQDs) surface, modified with vacancy and heteroatom (nitrogen (N) and oxygen (O)), has been studied using a combination of dispersion-corrected density functional theory (DFT) and quantum theory of atoms in molecules (QTAIM) approaches in aqueous media. The potential of GQD-NX and GQD-OX surfaces as highly effective adsorbents for NH4+ ions has been explored by detailed analysis of adsorption energies, molecular electrostatic potential, charge transfer, density-of-states, non-covalent interaction, and desorption time. It has been observed that the adsorption of NH4+ ions on the GQD-NX surfaces is primarily chemisorption, governed by electrostatic interactions and hydrogen bonds. However, adsorption of NH4+ over the surface of GQD-OX predominantly ranges from strong physisorption to weak chemisorption arising from van der Waals interactions and hydrogen bonds. These findings present compelling new approach utilizing modified GQDs as highly efficient adsorbents for removing NH4+ ions from water.

The Persistence of Hydrogen Bonds in Pyrimidinones: From Solution to Crystal.

Pyrimidinone scaffolds are present in a wide array of molecules with synthetic and pharmacological utility. The inherent properties of these compounds may be attributed to intermolecular interactions analogous to the interactions that molecules tend to establish with active sites. Pyrimidinones and their fused derivatives have garnered significant interest due to their structural features, which resemble nitrogenous bases, the foundational building blocks of DNA and RNA. Similarly, pyrimidinones are predisposed to forming N-H···O hydrogen bonds akin to nitrogenous bases. Given this context, this study explored the supramolecular features and the predisposition to form hydrogen bonds in a series of 18 substituted 4-(trihalomethyl)-2(1H)-pyrimidinones. The formation of hydrogen bonds was observed in solution via nuclear magnetic resonance (NMR) spectroscopy experiments, and subsequently confirmed in the crystalline solid state. Hence, the 18 compounds were crystallized through crystallization assays by slow solvent evaporation, followed by single-crystal X-ray diffraction (SC-XRD). The supramolecular cluster demarcation was employed to evaluate all intermolecular interactions, and all crystalline structures exhibited robust hydrogen bonds, with an average energy of approximately -21.64 kcal mol-1 (∼19% of the total stabilization energy of the supramolecular clusters), irrespective of the substituents at positions 4, 5, or 6 of the pyrimidinone core. To elucidate the nature of these hydrogen bonds, an analysis based on the quantum theory of atoms in molecules (QTAIM) revealed that the predominant intermolecular interactions are N-H···O (average of -16.55 kcal mol-1) and C-H···O (average of -6.48 kcal mol-1). Through proposing crystallization mechanisms based on molecular stabilization energy data and contact areas between molecules and employing the supramolecular cluster and retrocrystallization concepts, it was determined that altering the halogen (F/Cl) at position 4 of the pyrimidinone nucleus modifies the crystallization mechanism pathway. Notably, the hydrogen bonds present in the initial proposed steps were confirmed by 1H NMR experiments using concentration-dependent techniques.

Prediction of Covalent Metal-Metal Bonding in Cp-M-M'-Nacnac Complexes of Group 2 and 12 Metals (Be, Mg, Ca, Zn, Cd, Hg).

Bimetallic CpMM'Nacnac molecules with group 2 and 12 metals (M=Be, Mg, Ca, Zn, Cd, Hg) that contain novel metal-metal bonding have been investigated in a theoretical study of their molecular and electronic structure, thermodynamic stability, and metal-metal bonding. In all cases the metal-metal bonds are characterized as electron-sharing covalent single bonds from natural bond orbital (NBO) and energy-decomposition analysis with natural orbitals of chemical valence (EDA-NOCV) analysis. The sum of [MM'] charges is relatively constant, with all complexes exhibiting a [MM']2+ core. Quantum theory of atoms in molecules (QTAIM) analysis indicates the presence of non-nuclear attractors (NNA) in the metal-metal bonds of the BeBe, MgMg, and CaCa complexes. There is substantial electron density (0.75-1.33 e) associated with the NNAs, which indicates that these metal-metal bonds, while classified as covalent electron-sharing bonds, retain significant metallic character that can be associated with reducing reactivity of the complex. The predicted stability of these complexes, combined with their novel covalent metal-metal bonding and potential as reducing agents, make them appealing targets for the synthesis of new metal-metal bonds.

Single crystal XRD, Hirshfeld surface analysis and computational approach for exploration of novel xanthene derivative

In order to study the structure-activity relationship of xanthene compound, hexahydro xanthene derivative was synthesized and characterized by single crystal X-rays diffraction. The molecular geometry was described in terms of dihedral angles between various rings present in structure. The stability of the supramolecular assembly was reinforced by multiple intermolecular interactions, which were inspected comprehensively via Hirshfeld surface analysis. DFT study revealed the excellent electronic properties and reactivity of synthesized compound. FMO is employed to uncover the orbitals energies and charge transfer within compound. The contribution of van der Waals forces is minor, while covalent nature of bonding is evidenced by the quantum theory of atoms in molecules (QTAIM) study. The electron transition from nonbonding orbitals (LP) to antibonding (LP*) are most prominent donor-acceptor interactions with significant stabilization energy. Ab-initio molecular dynamics reveals the kinetic and thermodynamic stability of present compound at room temperature. The excellent nonlinear optical properties and reactivity is revealed by its remarkable hyperpolarizability value.

A comparative study of the carbon-based nanostructures for the delivery and detection of drug metronidazole

The interactions between the metronidazole molecule and three different carbon-based nanostructures, fullerene (C60), carbon nanotube (CNT), and carbon nanosheet (CNS), were examined using density functional theory (DFT) calculations. The results indicate that C60 attaches metronidazole more stronger than CNT and CNS, and the adsorption energies of metronidazole with C60, CNT, and CNS are decreased after considering the solvent effects. The variation in energy gaps follows the order of CNS > C60 > CNT, indicating that CNS has better sensing performance for metronidazole compared to fullerene and CNT. Both CNT and CNS show a reasonable recovery time at an achievable operating temperature. According to the quantum theory of atoms in molecules (QTAIM) and symmetry-adapted perturbation theory (SAPT), the dispersion component is the primary factor in stabilization, followed by electrostatic interaction. Simulated infrared (IR) and ultraviolet-visible (UV–Vis) spectra provide a basis reference for further structural characterization. This work indicates that carbon-based nanomaterials have potential applications in the delivery and detection of metronidazole.

Unravelling the importance of hydrogen bonds and dihydrogen interactions in the supramolecular assembly of a caryolan-1-ol derivative: an experimental and theoretical investigation

We report here the synthesis of a caryolan-1-ol derivative, namely [(1R, 2S, 5R, 8S)-1-hydroxy-4,4,8-trimethyltricyclo[6.3.1.02,5]dodecan-6-one] (3), characterized by structural single-crystal X-ray diffraction, FTIR and 1H and 13C NMR spectroscopies. The crystal structure reveals weak noncovalent interactions along with O-H···O hydrogen bonding interactions that forms 1D network architectures. Hirshfeld surfaces and their two-dimensional fingerprint plots allow us to visualize the intermolecular contacts and their relative contributions to the total Hirshfeld surface for the compound. A comparative analysis against related compounds was carried out. The interaction energies for the molecular pair involving O-H···O hydrogen bonds indicated a dominant contribution to packing stabilization coming from the Coulombic components. Energy framework calculations afforded to analyse and visualize the topology of the intermolecular interactions responsible for the crystal packing, showing that dispersion energy prevail over the electrostatic one in the structure of 3. Theoretical calculations have been performed to analyse the unconventional noncovalent interactions observed in the solid-state structure of 3 using the quantum theory of atoms in molecules (QTAIM), noncovalent interactions plot (NCIplot) and natural bond orbital (NBO) computational tools.

Delocalization-ratio analysis of 3-center bonding in position-space for closo-boranes and related systems: Approaching the styx picture and beyond.

Closo-boron hydrides BnHn 2- (n = 5-12) are a conceptually well understood class of compounds. For these and a few related prototype compounds, both the local and the global picture of 3-center bonding are extracted from position-space quantities based on the electron density and the pair density. For this purpose, three-center delocalization indices between quantum theory of atoms in molecules (QTAIM) atoms in position space are used to develop a consistent set of local bond and triangle, and global cluster delocalization ratios (DRs), which are quantitatively compared with conceptual Γ values derived from the styx code for each cluster. Combination of the cluster DRs with associated effective numbers of skeletal electron sharing (SES) for selected cluster surface edges, triangles, or the whole cluster yields effective styx type values describing the trend and even the size of the conceptual styx codes for closo-boranes BnHn 2- and related systems with increasing cluster size n reasonably well. For nonuniform cluster topologies, the different vertex degrees are shown to cause systematic 3-center wise bond delocalization effects for the associated edges and triangles of different average vertex degrees. Extension of DR analysis beyond the styx type triangular cluster-surface bonding corresponds to a triangulation of multicentric bonding. The cluster-wise results keep indicating consistency with the mixed 2- and 3-center bonding approach. The successfully established chemical meaning of the local edge, triangle, and global cluster DRs and their associated SES values constitutes the basis for systematic investigations of mixed 2- and 3-center bonding scenarios in particular in intermetallic and related (endohedral) cluster compounds in the future.

Quantum Topological Atomic Properties of 44K molecules

We present a data set of quantum topological properties of atoms of 44K randomly selected molecules from the GDB-9 data set. These atomic properties were obtained as defined by the quantum theory of atoms in molecules (QTAIM) within an atomic basin, a region of real space bounded by zero-flux surfaces in the electron density gradient vector field. The wave function files were generated through DFT static calculations (B3LYP/6-31G), and the atomic properties were calculated using QTAIM. The calculated atomic properties include the energy of the atomic basin, the electronic population, the magnitude of the total dipole moment, and the magnitude of the total quadrupole moment. The atomic properties allow one to understand the chemical structure, reactivity, and molecular recognition. They can be incorporated into force fields for molecular dynamics or for predicting reactive sites. We believe that this data set could facilitate new studies in chemical informatics, machine learning applied to chemistry, and computational molecular design.

Self-assembled belt[12]pyridine nanotube for the adsorption and removal of anti-TB drugs from wastewater

Environmental safety is a major concern of today's world, and it has attracted the attention of the scientific research community. The environment gets contaminated due to various toxic drugs and pharmaceutical toxins coming from different sources. Therefore, removing these toxins is necessary for making the environment greener and safer. Nanomaterials are excellent candidates for adsorption and removal of harmful materials due to their unique properties. Herein we have studied self-assembled nanotube based on belt[12]pyridine (2-(12BPy)) as an adsorbent for the removal of antituberculosis drugs i.e. isoniazid (INZ) and pyrazinamide (PZA). The adsorption ability is studied by considering the adsorption energy (Eads), non-covalent interaction index analysis (NCI), quantum theory of atoms in molecules (QTAIM), energy decomposition analysis (EDA), charge transfer via natural bond orbital analysis (NBO) and electron localization function (ELF), and dipole moment. The results indicate strong adsorption of selected drugs with self-assembled nanotube without altering the electronic properties. Recovery time of the complexes is also calculated to understand the regeneration of the nanotube. Results also demonstrate that van der Waals forces are major contributor in the adsorption of drug molecules within the nanotube. Our results indicate that belt[12]pyridine (2-(12BPy)) nanotube can be used as an adsorbent for the removal of toxic drug molecules from the environment. This research will benefit the scientists working in the field of new sensors for biological components and materials.

Exploring Nano-optical Molecular Switch Systems for Potential Electronic Devices: Understanding Electric and Electronic Properties through DFT-QTAIM Assembly.

The design and synthesis of molecular nanoswitches using organic molecules represent a crucial research field within molecular electronics. To understand the switching mechanisms, it is essential to investigate various factors, such as charge/energy transfer, electron transfer, nonlinear optical properties (NLO), current-voltage (I-V) curves, Joule-like (LJL) and Peltier-like (LPL) intramolecular phenomenological coefficients, as well as the energy levels of the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) boundary orbitals. In this Article, a novel approach to designing a molecular nanoswitch and understanding its ON/OFF mechanism is presented, utilizing the quantum theory of atoms in molecules (QTAIM), density functional theory (DFT), and Landauer theory (LT). These analyses contribute significantly to a deep understanding of switching effects within molecular electronic systems.

Insights into the adsorption of thiophene and fluorinated-thiophenes on the Mg4O4 cluster: a quantum chemical investigation

In this work, the adsorption of thiophene on the Mg4O4 cluster was examined at the LC-ωPBE/6-311G(d,p) level of theory. The influence of replacing hydrogen atoms of thiophene with fluorine atoms was considered. The comparison of relative stabilities of possible isomers indicated most stable isomers were 3-FT … Mg4O4, 3,4-DFT … Mg4O4, 2,3,4-TFT … Mg4O4 structures in the mono, di and tri-fluorinated thiophenes, respectively. Corrected adsorption energy and thermodynamic parameter values of these systems were evaluated and the substituent effect on the adsorption was explored. 2-FT … Mg4O4, 3,4-DFT … Mg4O4, 2,3,4-TFT … Mg4O4 structures indicated the most significant adsorptions in the mono, di and tri-fluorinated thiophenes, respectively. Electrophilicity-based charge transfer (ECT) was employed to illustrate charge transfer between aromatic systems and the Mg4O4 cluster. Quantum theory of atoms in molecule (QTAIM) and interaction region indicator (IRI) were used to deeply investigate two fragments.