Quantum Effects In Biology Research Articles

Introduction of magneto-fluorescence fluctuation microspectroscopy for investigating quantum effects in biology

Magnetic field effects on radical pairs in chemical systems are generally well understood and have been successfully investigated with various spectroscopic techniques. However, understanding radical pairs and their quantum nature in biological systems is still in its infancy, which is due to the limitation of high-sensitivity instrumentation. Another reason for this lack of understanding is due to the complexity of biochemical reactions and minute magnetic field-induced changes on radical pair reactions (as low as or lower than a percent). The system design presented here is a new optical system to capture the quantum mechanical nature of biology with a high signal-to-noise ratio. Our magneto-fluorescence fluctuation microspectroscopic approach has the capability of measuring magnetic field effects as low as 0.2% on fluorescence signals near the single-photon level with single-photon avalanche diodes, and is demonstrated by magnetic field effects on 23 molecules. An additional detection system in the form of an EMCCD camera offers spatially resolved magnetic field effects with a novel post hoc digital lock-in amplifier for phase-sensitive camera detection. The aforementioned attributes are demonstrated with radical pair photochemical reactions on model biological systems. The instrument uncovers the importance of photodegradation on protein–flavin interactions via magnetic field effects, which will prove paramount when searching for similar quantum effects in biological locales.

Effects of lithium isotopes on sodium/lithium co-transport and calcium efflux through the sodium/calcium/lithium exchanger in mitochondria.

The effects of lithium (Li) isotopes and their impact on biological processes have recently gained increased attention due to the significance of Li as a pharmacological agent and the potential that Li isotopic effects in neuroscience contexts may constitute a new example of quantum effects in biology. Previous studies have shown that the two Li isotopes, which differ in mass and nuclear spin, have unusual different effects in vivo and in vitro and, although some molecular targets for Li isotope fractionation have been proposed, it is not known whether those result in observable downstream neurophysiological effects. In this work we studied fluxes of Li+, sodium (Na+) and calcium (Ca2+) ions in the mitochondrial sodium/calcium/lithium exchanger (NCLX), the only transporter known with recognized specificity for Li+. We studied the effect of Li+ isotopes on Ca2+ efflux from heart mitochondria in comparison to natural Li+ and Na+ using Ca2+-induced fluorescence and investigated a possible Li isotope fractionation in mitochondria using inductively coupled plasma mass spectrometry (ICP-MS). Our fluorescence data indicate that Ca2+ efflux increases with higher concentrations of either Li+ or Na+. We found that the simultaneous presence of Li+ and Na+ increases Ca2+ efflux compared to Ca2+ efflux caused by the same concentration of Li+ alone. However, no differentiation in the Ca2+ efflux between the two Li+ isotopes was observed, either for Li+ alone or in mixtures of Li+ and Na+. Our ICP-MS data demonstrate that there is selectivity between Na+ and Li+ (greater Na+ than Li+ uptake) and, most interestingly, between the Li+ isotopes (greater 6Li+ than 7Li+ uptake) by the inner mitochondrial membrane. In summary, we observed no Li+ isotope differentiation for Ca2+ efflux in mitochondria via NCLX but found a Li+ isotope fractionation during Li+ uptake by mitochondria with NCLX active or blocked. Our results suggest that the transport of Li+ via NCLX is not the main pathway for Li+ isotope fractionation and that this differentiation does not affect Ca2+ efflux in mitochondria. Therefore, explaining the puzzling effects of Li+ isotopes observed in other contexts will require further investigation to identify the molecular targets for Li+ isotope differentiation.

The use of NADH anisotropy to investigate mitochondrial cristae alignment

Life may be expressed as the flow of electrons, protons, and other ions, resulting in large potential difference. It is also highly photo-sensitive, as a large proportion of the redox capable molecules it relies on are chromophoric. It is thus suggestive that a key organelle in eukaryotes, the mitochondrion, constantly adapt their morphology as part of the homeostatic process. Studying unstained in vivo nano-scale structure in live cells is technically very challenging. One option is to study a central electron carrier in metabolism, reduced nicotinamide adenine dinucleotide (NADH), which is fluorescent and mostly located within mitochondria. Using one and two-photon absorption (340–360 nm and 730 nm, respectively), fluorescence lifetime imaging and anisotropy spectroscopy of NADH in solution and in live cells, we show that mitochondria do indeed appear to be aligned and exhibit high anisotropy (asymmetric directionality). Aqueous solution of NADH showed an anisotropy of ~ 0.20 compared to fluorescein or coumarin of < 0.1 and 0.04 in water respectively and as expected for small organic molecules. The anisotropy of NADH also increased further to 0.30 in the presence of proteins and 0.42 in glycerol (restricted environment) following two-photon excitation, suggesting more ordered structures. Two-photon NADH fluorescence imaging of Michigan Cancer Foundation-7 (MCF7) also showed strong anisotropy of 0.25 to 0.45. NADH has a quantum yield of fluorescence of 2% compared to more than 40% for photoionisation (electron generation), when exposed to light at 360 nm and below. The consequence of such highly ordered and directional NADH patterns with respect to electron ejection upon ultra-violet (UV) excitation could be very informative—especially in relation to ascertaining the extent of quantum effects in biology, including electron and photonic cascade, communication and modulation of effects such as spin and tunnelling.

Wireless electrical–molecular quantum signalling for cancer cell apoptosis

Quantum biological tunnelling for electron transfer is involved in controlling essential functions for life such as cellular respiration and homoeostasis. Understanding and controlling the quantum effects in biology has the potential to modulate biological functions. Here we merge wireless nano-electrochemical tools with cancer cells for control over electron transfer to trigger cancer cell death. Gold bipolar nanoelectrodes functionalized with redox-active cytochrome c and a redox mediator zinc porphyrin are developed as electric-field-stimulating bio-actuators, termed bio-nanoantennae. We show that a remote electrical input regulates electron transport between these redox molecules, which results in quantum biological tunnelling for electron transfer to trigger apoptosis in patient-derived cancer cells in a selective manner. Transcriptomics data show that the electric-field-induced bio-nanoantenna targets the cancer cells in a unique manner, representing electrically induced control of molecular signalling. The work shows the potential of quantum-based medical diagnostics and treatments.

Quantum Biotechnology

AbstractQuantum technologies leverage the laws of quantum physics to achieve performance advantages in applications ranging from computing to communications and sensing. They have been proposed to have a range of applications in biological science. This includes better microscopes and biosensors, improved simulations of molecular processes, and new capabilities to control the behavior of biomolecules and chemical reactions. Quantum effects are also predicted, with much debate, to have functional benefits in biology, for instance, allowing more efficient energy transport and improving the rate of enzyme catalysis. Conversely, the robustness of biological systems to disorder from their environment has led to proposals to use them as components within quantum technologies, for instance as light sources for quantum communication systems. Together, this breadth of prospective applications at the interface of quantum and biological science suggests that quantum physics will play an important role in stimulating future biotechnological advances. This review aims to provide an overview of this emerging field of quantum biotechnology, introducing current capabilities, future prospects, and potential areas of impact. The review is written to be accessible to the non‐expert and focuses on the four key areas of quantum‐enabled sensing, quantum‐enabled imaging, quantum biomolecular control, and quantum effects in biology.

Quantum Effects in Biology

Photonic techniques are uncovering evidence that life’s evolutionary toolkit just might include quantum coherence, tunneling and entanglement.

Coherence turned on by incoherent light

One of the most pertinent problems in the debate on non-trivial quantum effects in biology concerns natural photosynthesis. Since sunlight is composed of thermal photons, it was argued to be unable to induce quantum coherence in matter, and that quantum mechanics is therefore irrelevant for the dynamical processes following photoabsorption. Our present analysis of a toy ‘molecular aggregate’—composed of two dipole–dipole interacting two-level atoms treated as an open quantum system—however shows that incoherent excitations indeed can trigger persistent, coherent dynamics in both the site and the exciton bases: we demonstrate that collective decay processes induced by the dipole–dipole interactions create coherent intermolecular transport—regardless of the coherence properties of the incoming radiation. Our analysis shows that the steady state coherence is mediated by the population imbalance between the molecules and, therefore, increases with the energy difference between the two-level atoms. Our results establish the importance of collective decay processes in the study of ultrafast photophysics, and especially their potential role to generate stationary coherence in incoherently driven quantum transport.

Quantum effects in biology: golden rule in enzymes, olfaction, photosynthesis and magnetodetection.

Despite certain quantum concepts, such as superposition states, entanglement, 'spooky action at a distance' and tunnelling through insulating walls, being somewhat counterintuitive, they are no doubt extremely useful constructs in theoretical and experimental physics. More uncertain, however, is whether or not these concepts are fundamental to biology and living processes. Of course, at the fundamental level all things are quantum, because all things are built from the quantized states and rules that govern atoms. But when does the quantum mechanical toolkit become the best tool for the job? This review looks at four areas of 'quantum effects in biology'. These are biosystems that are very diverse in detail but possess some commonality. They are all (i) effects in biology: rates of a signal (or information) that can be calculated from a form of the 'golden rule' and (ii) they are all protein-pigment (or ligand) complex systems. It is shown, beginning with the rate equation, that all these systems may contain some degree of quantumeffect, and where experimental evidence is available, it is explored to determine how the quantum analysis aids in understanding of the process.

Centrosymmetry enhances quantum transport in disordered molecular networks

For more than 50 years we have known that photosynthetic systems harvest solar energy with almost unit quantum efficiency. However, recent experimental evidence of quantum coherence during the excitonic energy transport in photosynthetic organisms challenges our understanding of this fundamental biological function. Currently, and despite numerous efforts, the causal connection between coherence and efficiency is still a matter of debate. We show, through extensive simulations of quantum coherent transport on networks, that three dimensional structures characterized by centro-symmetric Hamiltonians are statistically more efficient than random arrangements. Moreover, a strong correlation of centro-symmetry with quantum efficiency is also observed under the coherent transport dynamics induced by experimentally estimated electronic Hamiltonians of the Fenna–Mathew–Olson complex of sulfur bacteria and of the cryptophyte PC645 complex of marine algae. The application of a genetic algorithm results in a set of optimized Hamiltonians only when seeded from the experimentally estimated Hamiltonian. These results suggest that what appears to be geometrically disordered complexes may well exhibit an inherent hidden symmetry which enhances the energy transport between chromophores. We are confident that our results will motivate research to explore the properties of nearly centro-symmetric Hamiltonians in realistic environments, and to unveil the role of symmetries for quantum effects in biology. The unravelling of such symmetries may open novel perspectives and suggest new design principles in the development of artificial devices.

Inhomogeneous dephasing masks coherence lifetimes in ensemble measurements

An open question at the forefront of modern physical sciences is what role, if any, quantum effects may play in biological sensing and energy transport mechanisms. One area of such research concerns the possibility of coherent energy transport in photosynthetic systems. Spectroscopic evidence of long-lived quantum coherence in photosynthetic light-harvesting pigment protein complexes (PPCs), along with theoretical modeling of PPCs, has indicated that coherent energy transport might boost efficiency of energy transport in photosynthesis. Accurate assessment of coherence lifetimes is crucial for modeling the extent to which quantum effects participate in this energy transfer, because such quantum effects can only contribute to mechanisms proceeding on timescales over which the coherences persist. While spectroscopy is a useful way to measure coherence lifetimes, inhomogeneity in the transition energies across the measured ensemble may lead to underestimation of coherence lifetimes from spectroscopic experiments. Theoretical models of antenna complexes generally model a single system, and direct comparison of single system models to ensemble averaged experimental data may lead to systematic underestimation of coherence lifetimes, distorting much of the current discussion. In this study, we use simulations of the Fenna-Matthews-Olson complex to model single complexes as well as averaged ensembles to demonstrate and roughly quantify the effect of averaging over an inhomogeneous ensemble on measured coherence lifetimes. We choose to model the Fenna-Matthews-Olson complex because that system has been a focus for much of the recent discussion of quantum effects in biology, and use an early version of the well known environment-assisted quantum transport model to facilitate straightforward comparison between the current model and past work. Although ensemble inhomogeneity is known to lead to shorter lifetimes of observed oscillations (simply inhomogeneous spectral broadening in the time domain), this important fact has been left out of recent discussions of spectroscopic measurements of energy transport in photosynthesis. In general, these discussions have compared single-system theoretical models to whole-ensemble laboratory measurements without addressing the effect of inhomogeneous dephasing. Our work addresses this distinction between single system and ensemble averaged observations, and shows that the ensemble averaging inherent in many experiments leads to an underestimation of coherence lifetimes in individual systems.

Quantum Effects in Biology and Their Applications to Light Harvesting and Sensing

This session introduced the novel area of quantum effects in biological systems: it presented its seminal experimental discoveries and theoretical ideas, namely regarding photosynthetic systems and olfactory recognition, and discussed their potential applications to the development of artificial devices for more efficient light harvesting and finer sensing.

Quantum effects in biology: Bird navigation

Birds possess a physiological magnetic compass, enabling them to make correct directional choices during their migratory flights. The biophysical basis of this compass remains unknown. One of the two major hypotheses postulates that birds use a light-induced radical pair reaction involving coherent spin evolution of two electrons as the foundation of their magnetic compass sensor. This hypothesis has received significant attention during the past decade. Here, we review the growing body of chemical, biophysical, behavioral, and neurobiological evidence suggesting that this quantum-based mechanism may indeed form the basis of the avian magnetic compass.

Discussions on Session 4A:Quantum effects in biology: photosynthesis

Discussions on Session 4A:Quantum effects in biology: photosynthesis

Discussions on Session 5B:Quantum effects in biology: enzyme activity, bird navigation

Discussions on Session 5B:Quantum effects in biology: enzyme activity, bird navigation

Electronic coherence effects in photosynthetic light harvesting

Photosynthetic light harvesting is a paradigmatic example for quantum effects in biology. In this work, we review studies on quantum coherence effects in the LH2 antenna complex from purple bacteria to demonstrate how quantum mechanical rules play important roles in the speedup of excitation energy transfer, the stabilization of electronic excitations, and the robustness of light harvesting in photosynthesis. Subsequently, we present our recent theoretical studies on exciton dynamical localization and excitonic coherence generation in photosynthetic systems. We apply a variational-polaron approach to investigate decoherence of exciton states induced by dynamical fluctuations due to system-environment interactions. The results indicate that the dynamical localization of photoexcitations in photosynthetic complexes is significant and imperative for a complete understanding of coherence and excitation dynamics in photosynthesis. Moreover, we use a simple model to investigate quantum coherence effects in intercomplex excitation energy transfer in natural photosynthesis, with a focus on the likelihoods of generating excitonic coherences during the process. Our model simulations reveal that excitonic coherence between acceptor exciton states and transient nonlocal quantum correlation between distant pairs of chromophores can be generated through intercomplex energy transfer. Finally, we discuss the implications of these theoretical works and important open questions that remain to be answered.

Discussions on Session 4B:Quantum effects in biology: photosynthesis

Discussions on Session 4B:Quantum effects in biology: photosynthesis

Quantum effects in biology

The idea that quantum-mechanical phenomena can play nontrivial roles in biology has fascinated researchers for a century. Here we review some examples of such effects, including light-harvesting in photosynthesis, vision, electron- and proton-tunneling, olfactory sensing, and magnetoreception. We examine how experimental tests have aided this field in recent years and discuss the importance of developing new experimental probes for future work. We examine areas that should be the focus of future studies and touch on questions such as biological relevance of quantum-mechanical processes. To exemplify current research directions, we provide some detailed discussions of quantum-coherence in photosynthetic light-harvesting and highlight the crucial interplay between experiment and theory that has provided leaps in our understanding. We address questions about why coherence matters, what it is, how it can be identified, and how we should think about optimization of light-harvesting and the role coherence plays.

Discussions on Session 5A:Quantum effects in biology: enzyme activity, bird navigation

Discussions on Session 5A:Quantum effects in biology: enzyme activity, bird navigation