In mobile ad hoc network (MANET), providing a guaranteed service for packet delivery has to pass through several hurdles. Providing guaranteed service should address multiple quality of service (QoS) parameters under uncertain network conditions. The QoS parameters should be prioritised in consideration of MANET constraints and applications running on MANET. The QoS aspects of MANET are impacted by the multi-layer stack parameters. An analysis has been conducted to identify the trade-off point for configuring the stack parameters to achieve better QoS in packet delivery. The outcome of analysis is discussed in terms of packet error rate, energy efficiency, goodput and delay with the support of rough set theory (RST). The multi-objective analysis capabilities of RST make it suitable for taking dynamic decision to prioritise the QoS parameter. The rough set derived decision rules are filtered out based on probabilistic properties like strength, certainty and coverage of the decision rules.